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BREAKWATER: 2026 Update

BREAKWATER: 2026 Update

DocTalk
2026
Dr. Kopetz
BRAF
MSS
Trials

In this DocTalk, Dr. Scott Kopetz, MD Anderson Cancer Center, discusses the much awaited results of the FOLFIRI + Encorafenib + Cetuximab arm of this 1L trial for patients with BRAF V600E–mutated metastatic colorectal cancer. Recorded in February, 2026.

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN.Welcome to my first Doc Talk of 2026 and for those of you who are joining live, welcome. And I am so excited to have Dr Kopetz with us. And as many of you know, he’s no stranger to us in COLONTOWN. He’s an amazing oncologist, a very well known researcher , who designs these amazing colorectal cancer trials, and is a speaker at all the international and national conferences, and has received so many awards. And in between all of that, he finds time to engage with us, and for that, I’m so grateful. And he has many titles and honors, and I think to us, he’s a beloved oncologist who’s focusing on BRAF and KRAS mutated colorectal cancer. And so once again, I’m so thrilled to have Dr kopets with us to talk to us about the 2026 BREAKWATER updates. Welcome Dr Kopetz.

Dr. Kopetz 1:14
Yeah, thanks so much for such a delightful and kind introduction, and thanks for all that you do, and you really do such an amazing job of educating and advocating. And so we’re so grateful for community, for you as well. So delighted to be able to share some of the updates in BRAF.And I thought during this, I would take opportunity to kind of take a step back with a little bit of history, but then really talk about where we are. How are we thinking about this in 2026 so with that, I had to start with just the complexities that we’re dealing with. Don’t worry about interpreting all this. This is for the gurus in the field. There’s a Frank McCormick, he’s kind of considered one of the fathers of RAS and he’s kind of put together this pathway about all the complexities of how normal cells and then cancer cells signal. We kind of think about, and you may have heard in biomarker testing, kind of the key ways that colorectal cancer can acquire mutations. These can be through KRAS, NRAS mutations commonly, but also BRAF. And BRAF is a distinct entity. It’s probably the one that we were able to target first, but a lot of the lessons that we’re learning, and we’ll come back to this point that in BRAF are now being applied to KRAS G12C, and think in the future, G12D will be following right along in this path. So hopefully these wedges of targetable oncogenes will continue to grow.

Dr. Kopetz 3:05
Okay? I said BRAF was targetable. This now goes back for more than a decade where the kind of first inhibitors which some brilliant medicinal chemists figured out that you could actually target this specific mutation that’s present in BRAF. Now I’ll take a moment to say what we’re talking about is a BRAFV600 E, so it’s the most common mutation, but there are others. Now the others are a little more complex. Everything that we’ll be talking about in terms of targeting is really this most common V600E mutation. Others we’re not fully sure what to do with, because they’re so heterogeneous and complex. But the BRAF V600E, also common in melanoma, and some of the initial studies that kind of a classic one.

Dr. Kopetz 3:54
This is one of the first studies that we ran where we said, okay, let’s treat melanoma. Let’s treat colorectal the same and we got very different outcomes, and that kind of set us off down this path to try to figure out what is it that’s unique about colorectal? How do we better target that? So there’s really two main crux, right? We have to improve the shrinkage of the tumor. And then, importantly, really, really target the durability. And we’ll talk about that, about how can we keep the cancer, shrink it down, and keep it down for as long as possible? So a lot of the work has been trying to do both, and you’ll see progress has been made there. All right, so let me take a step back. If you were a medical student, maybe first or second month of medical school, you would get introduced this concept of homeostatic regulation and how it’s used in the body. But I think it’s a useful concept for us to understand, and it’s this idea that our bodies like to be in a certain condition and that they have feedback mechanisms to keep us in that that condition. And there’s the more critical the pathway is, the more critical that regulation is, the tighter the feedback is present. And it turns out that this growth factor pathway, we call it the MAP kinase pathway, it incorporates K RAS, NRAS, BRAF. Those are incredibly important for cell growth and healthy cell division, and so that the cells, especially the colon cells, have a lot of these mechanisms to keep that level of signaling just right. so this is homeostatic. And Walter Cannon really was the–and you can see how, just by virtue of the picture, how old this concept is, but we still see it.

Dr. Kopetz 5:58
So what does it mean? Well, when we are in normal physiology, you can think about your glucose levels, if you’re not a diabetic, about how tightly regulated that is, but even something simple, like your body temperature, right? So you go out and sit in the sun, your body temperature rises, your brain recognizes that. It then dilates your blood vessels and also induces sweating. And then the response is, your body’s temperature is restored, right? Very simple concept, but it’s this kind of regulation to say your body wants to keep its temperature in this really tight range, and it’s going to do everything it can to maintain that. So the same thing happens after targeting BRAF, right? So in a BRAF mutation growth signaling this tumor cell is has a level of signaling that it wants, and we can give an inhibitor of BRAF, but there are feedback mechanisms that this tumor uses to say, nope, nope. That’s too low. I want higher signaling in this growth pathway. And one of the things that does is it activates EGFR, and it turns out that that then reactivates the growth, and the signaling is restored from the concept of the cancer cell, right? So this is homeostasis from the perspective of a cancer cell.

Dr. Kopetz 7:29
Now, I know there’s a lot of aficionados out there, so if I were to do this and try to do this simplistic Frank McCormick figure, it would look like this, right? Where there’s this signaling cascade, where one protein, activates the next one, which activates the next one, and down at the bottom of that is growth, right? This is the signal that says cancer’s growing. So if we have the BRAF mutation now, green is kind of signaling, an activation that’s just pumping out signal– we inhibit BRAF, what happens? It gets shut down, right? So transiently, it does a good job, but what happens then is you get these feedback mechanisms that get de repressed. EGFR now gets turned on. It now signals around that inhibition. We’re still blocking BRAF, but there’s pathways to get around it, and the signaling is restored, right? So that’s why BRAF alone doesn’t work, because the tumor is adapting so quickly. Now, when you then now come in and block BRAF and EGFR together, that’s when you can shut down the system, right? It can no longer compensate. You block two key nodes and and that was the premise. So fast forward through a lot of clinical trials and work, the BEACON study was the first to really show this, that when you combine BRAF and EGFR, compared to a control arm, you can improve overall survival response rates in this setting, and this was in a later line population, where there’s improvements here from 5.9 to 9.3 months. So improvements, there’s a bit of a tail. This idea that a proportion of patients can really have a longer duration of that as well. And the overall the side effects that you can see here as well. So this was several years back, and resulted in approvals for the second and third line. But we want to do better, right? And so really trying to understand, well, how could we do that? What’s the path forward there?

Dr. Kopetz 9:47
So gonna take a step back to the lab, because I’m a physician scientist. So we tend to do something the lab, bring into the clinic, learn from the patients, bring it back into the lab, and kind of keep iterating. And so throughout all of this, we’re doing a lot of preclinical modeling of cancer. And so, how do we do this? Well, we use mice for this. And why mice? It’s kind of weird, right? Like, why do we use mice? Why don’t we use other areas or other model systems? So it turns out that we actually have a fair bit of similarity with mice, like 95% similarity to mice in our genetic code. A lot of the ways that the our systems work are very similar. And then there’s some practical advantages that we can house them in controlled environments. Can handle them, and they have kind of been used for decades, continue to be used for a lot of this testing, right? And so we’re really really, I think, thankful for the opportunity to learn as much as we can in these systems before we bring to patients, so we’re bringing better things forward.

Dr. Kopetz 11:04
So, you know, just want to advocate. This is kind of what what the mice look like. So we actually use these mice that don’t have any hair, so they’re called nude mice. So, and then a lot of times the tumors are kind of grown on the flanks of the mice, so we can put little calipers around it and kind of measure how things are are going and advancing. Now we take extraordinary care to provide a really good environment for the mice. We actually have veterinarians whose sole job is every day to check on the well being and health of the mice, and they get all sorts of like things to socialize together through all of this. And so just know that we’re trying to be really good stewards of this, and we don’t take this research lightly, but we know that it’s really important for our patients. Okay with that a bit of aside, because we like to show as researchers how can we do things right? And so one of the questions that we were asking is, how can we improve the targeted therapy, and we did an earlier study where we actually combined with the earlier generations BRAF and inhibitors with with irinotecan and we had patients that their disease responded. So we gave chemo, EGFR and BRAF inhibition, and not just BRAF and EGFR alone. And so the question was, okay, we had responders, and it was working, and we had some patients that were really generous, and they said we will be willing to do a biopsy so that you can take tissue out from my tumor and you can study it. And so we’re so thankful for the patient’s contribution to not only enrolling in research, but to support things like this. But what that allowed us to do is say, Okay, I’m going to take that piece of tumor, I’m going to take it back to the mice, just like you saw, and I’m going to grow that patient’s tumor on the flank of the mouse, and I’m going to propagate that tumor, so I can treat many different mice, and then I can treat that tumor with the targeted therapy alone, the chemotherapy alone, or the combination. And then ask the question like, if that model works, what was that the patient was responding to? They got three drugs. But did they need all three? Maybe you only needed two in this or our other one. And we were really intrigued. And I just showed three examples here, where you want to see things kind of going below the lines, the lower, the better, smaller the tumors here. And what we found was that the targeted therapy slowed growth. Chemo slowed growth, in two of the models, but you only really got regressions and things shrinking down when you did the combination. And so that was a really important finding for us. Now it turned out because I wanted to show all the data that one on the far right here. What that said is, you know what? The targeted therapy didn’t do anything. It was all chemotherapy doing the heavy lifting here, we would predict in this patient. And so we kind of expanded that out and looked at some really resistant tumors and showed that indeed, that when you combine this, we were using a full theory regimen, so irinotecan and 5FU, that you could really get these synergies and really suggesting that there is opportunities to improve outcomes and the durability through this. So that kind concept, as well as the idea to say, well, let’s try to get this into more patients sooner, really led to the idea of the BREAKWATER study.

Dr. Kopetz 15:06
And so what did we do? Well, designed this study, randomized 637, patients to a standard of care without targeted therapy at BRAF. Patients could still get BRAF and EGFR in second or third line because it was approved. But the idea is to start with standard chemotherapy in the control arm. Or EC, encorafenib, cetuximab and FOLFOX or EC alone as a kind of a third arm. And so we were trying to gather some data, like, do you need the chemotherapy there? And then we’re looking at progression free survival, response rate. Here’s the characteristics of the patients enrolled, and this really reflects a bit of what we see in kind of general practice here. So what do we see? So remember, we said we want to improve response rate and durability. So first thing we said is, let’s look at response rate. And indeed, if you look at the blue bar with the EC and FOLFOX now we had two thirds of patients approximately responding to the therapy, meaning the tumor shrank down by 50% or more, versus 37% with the standard of care therapy, a little more than a third. And that this was durable, and that was encouraging. So when we get a response and there was some increased durability, now one of the terms that we use to measure durability is progression free survival, as you’re likely aware. And so we looked at that progression free survival curve, what we saw was an improvement in progression free survival of seven to 12 months.

Dr. Kopetz 16:42
So what does that mean? I’m sure many of you are well versed in these curves, but I thought it was always worth to do a little bit of a primer about what this means. These are a measure of any time point along the way, the number of patients that are still receiving therapy and have not progressed. So we can look at this, and for example, we can see about it at six months time frame here, that 60% of patients were still on therapy and were free of progression. And over time, more patients progress, and you can see the curve coming down. And so by the time you get to 12 months here in the control arm, about only 30% of patients were no longer progressing. So we’ll say, Okay, that’s good. How do we describe the curves here? And so you’ll hear this term median, right? Well, what does that mean? Well, it means, really at that 50%, meaning half the patients progress before, half the patients progress after that time point. So the median here we use as our estimate. And you can see, you know, the median is a little over six months 7.1 exactly here in the control arm, but that median is closer to 12.8 months here in the in the experimental arm. Now we can use these numbers and now start to compare across different settings, BRAF has always been a tough or has not always felt to respond well to standard chemotherapy. FOLFOX, FOLFIRI alone, even with Bevacizumab, usually get like 6-7 months. Now, while the non BRAF colorectal cancer is usually around 10 months or, maybe 11 months. So this is really striking, because we’ve taken a tumor that had well worse than your average outcomes, and now with this regimen, now we have a median progression free survival that looks better than all the other tumor types, subtypes of colorectal cancer out there. So it’s a really big kind of chip. And I think, as we mentioned before, we also see this, this tail, and this gets a little noisy because we don’t have as long a follow up yet, but this idea of, this flattening here, and about a third of patients, even at two years, are kind of still ongoing, and that’s a much higher tail, as we say. So, the idea that there’s a subset of patients that we don’t fully understand why, but they get a really durable, prolonged outcome from this. So we need to know more. We need to make more people like that. So that’s one of our goals.

Dr. Kopetz 19:48
All right. Now we talked about, there’s a third arm, if you recall, right where encorafenib, cetuximab was used alone, no chemotherapy. And here’s the orange line for the encorafenib Cetuximab alone. So didn’t do better than the standard chemotherapy, but didn’t do worse either. So it is, it kind of is in that middle ground. The kind of interpretation of this is, you know what this is, typically the the EC alone is better tolerated than FOLFOX. If there’s a patient that is maybe not the best candidate for FOLFOX, can’t really tolerate it well, for whatever reason, there’s an option to at least do the EC alone, and that may be better than than other options for that unique case. But for most patients, we think that that is EC and FOLFOX should be there. Now, progression free survival is important, but remember I mentioned that well, the control arm could go on and they could get BRAF and EGFR right, and so is this just shifting when things are and if that’s the case, for what we really care about is, can patients live longer with this regimen?

Dr. Kopetz 21:08
And so that’s the overall survival– very similar. We use this median to say half of patients now, in this case, are living longer and half are living shorter than that estimate. But what we saw was that the standard of care about 15 months– what we expect on average, but that we’re able to double that number. So really, a doubling of overall survival is a really, a compelling number to see. And so now getting medium survivals that are much, much higher. What about that third arm? Kind of fell right in between. So, it’s not an unreasonable consideration to kind of start with that, but still not as good as the EC and FOLFOX alone.

Dr. Kopetz 21:59
Okay, thanks doc for showing all those complex slides. What does it really mean? So, here’s kind of that graphic summary, thanks to nano banana. I’ll say a little AI generated one. But what you can see here is that really, progression free survival, you’re reducing that risk of progression. And then that survival time is, in essence doubled, going from 15 to 30 months. Those are the kind of the key takeaways. Now, what about side effects here? Most frequent side effects are shown here, in this figure. And what we can see is that nausea, diarrhea, those kind of things that we normally think about with the chemotherapy, is about the same between these and that the real difference here is kind of in some of the BRAF specific toxicities. In this case, it’s looking at arthralgia and rash. So you can see that the combination of with encorafenib+ cetuximab can generate some rash. We use grading systems to grade one two, which means a more mild rash and arthralgia, and still impact quality of life. And so it’s something that we manage and work through with patients.

Dr. Kopetz 23:35
Now, one of the questions that’s come up is like, well, is this better than if we did really intense chemotherapy at the beginning. And so there are regimens where we put FOLFOX and combined with irinotecan and what we call the triplet regimen. And so this was just a bit of an aside to say that we looked at what patients could have gotten some of these more intense regimens, and then looked at some of the survival here. And the bottom line is that it didn’t matter in the control arm, if you use really intense chemotherapy that that really you got the best survival with the with the EC FOLFOX. Now we’ve been talking a lot about FOLFOX, and this is data from last year. So, but what about alternates? So we like our acronyms as we know and so FOLFOX, of course, is a 5FU oxaliplatin. Oxaliplatin is the neuropathy one. There’s the FOLFIRI, it is irinotecan and 5FU. And there are situations where patients, just may not be best served with FOLFOX. They may have had prior oxaliplatin exposure, may have had an early stage tumors, resected, got adjuvant FOLFOX, for example, and then the disease recurred later. Or maybe patients that have kind of diabetic neuropathy, for example, where they have other reasons for nerve damage. And then sometimes it’s just a lot of providers are looking at the side effect profile and just saying, you know, I just think FOLFIRI is a better choice in general to start with. And so all these things now to the credit of the sponsoring company for BREAKWATER they heard us when we said, we really want to have more options for our patients. And we want to generate data as well with with FOLFIRI. Right now, most companies, I would say don’t really do two studies to look at the same thing, but they heard us and and agreed to run this smaller study. So remember, before we’re looking at over 600, here we have like, 140 something patients.

Dr. Kopetz 26:02
And now this is just after the BREAKWATER finished enrolling. We then opened and enrolled this one. Endpoints, response, rate, side effects, very similar here. There was, interestingly less arthralgia and rash in this one, not sure I fully understand it, but it was that’s kind of what we saw there, but really low rates of grade three toxicities in general. So didn’t add much in terms of toxicity. Here again, we saw very similar, about two thirds of patients responding versus about 39% of the control arm there. So encouraging that there’s that much higher response rate, even with a FOLFIRI backbone. And overall survival, really early, we will have some updated data we’ll be sharing in Jun. But that this kind of really nice early separation of the curves that were similar in magnitude to what we saw before. So that’s great. It tells us FOLFOX and EC can be a backbone. FOLFIRI and EC can be a backbone.

Dr. Kopetz 27:15
So wanted to spend maybe the last few minutes and just talk a little philosophically, and that little more of the science here, right? So one of the questions is, wow, we’re doubling overall survival, not by bringing a new drug in, but by taking a drug that we would normally give in second and third line, and now combining it with our first line regimen. What gives? Yes, maybe it’s better, but why a doubling in overall survival? And, I shared some of that kind of concepts pre clinically, and I didn’t get into a lot of the deep science that led us to think that this could really work. But one way to really think about this is that when we give chemotherapy alone, and these are completely arbitrary numbers. We give chemotherapy alone, there may be 10 different ways that the tumor cells can develop resistance. When we give BRAF EGFR inhibition, again, maybe 10 different ways that resistance can develop, including acquisition of KRAS and NRAS secondary mutations, for example, which are really well described and and I didn’t present that data, but this idea that other mutations can develop that can reactivate the pathway. Now the concept, though, is that a new KRAS mutation is not going to make them resistant to FOLFIRI, right? And likewise, some of the resistance mechanisms to the chemotherapy may be blocked by BRAF and EGFR. And so it’s not that the cancer can’t find a way to develop resistance. Gosh, it almost always does, but we’re just making it much, much harder. So the idea is that the shared pathways of resistance are constrained, so that’s this lower level of number of mutation or resistance pathways that can occur. So by putting them together, you really make the tumor work hard to find some mechanism that will result in resistance to the chemo and resistance to the targeted therapy together.

Dr. Kopetz 29:25
Now it’s a great theory. Did we actually see any data about that? Like is what we have there? So I mentioned that, and we did a lot of work and published papers around different mechanisms of resistance to BRAF and EGFR when it’s given alone. These secondary mutations are kind of the key ones that we see. So what we did is presented some of the data on the CT DNA, so you can use circulating tumor DNA to explore the mechanisms of resistance there. And what we showed was that by month seven in the targeted therapy arms of the of the BREAKWATER study that EC alone, about 38% of patients already had these resistance mutations that were developed and evident. They developed KRAS variants, NRAS, MAP2K1, which is downstream, amplifications like MET or BRAF exon deletions, all these things that have been shown. But when we combine it with chemotherapy, now there’s no selective pressure, really, to generate that the chemo can keep the cancer from growing, even with those. And only 6% of patients at month 7 in the combination arm had that mechanism of resistance. And you can see, even at the end of study, after prolonged treatment, that we were seeing much lower rates of these secondary alterations. So we’re trying to and this is really where we are at the frontier of trying to understand this, is kind of the idea to say, how can we constrain the mechanisms of resistance. What are those two remaining shared mechanisms that are allowing the cancers to evade? We don’t think they’re genomic. They’re not acquiring second mutations, necessarily, that’s driving this, but there’s some tumor plasticity, state changes that are occurring. These are kind of the terms you’re hearing in oncology field now about what’s the plasticity of the tumor, like, how is it adapting to these different states? So stay tuned. But this is really where we’re working on it. We’re trying to nip these remaining things in the bud.

Dr. Kopetz 31:42
Okay, so adaptive resistance, you got your primer on homeostasis, right? There’ll be a test later on the homeostatic regulations, but this combination of BRAF and EGFR blunts that. It is a standard of care, but that the chemotherapy combinations have compelling biologic rationale, as well as the really now strong clinical data, doubling overall survival. And so that we do think that EC and FOLFOX, and I would say EC and FOLFIRI as well, are a new standard of care in the US and and I think this is even when you compare to the really intense chemotherapy there. The key for all of this is that in order to actually act early and take advantage of all this great biology, you got to know what your molecular subtype is, and so this is why one of the key things about this is molecular testing early. Don’t wait till second or third line of treatment to really start to act on the molecular subtype of your tumor. It’s really important for patients to understand their molecular subtype at diagnosis and act on it, if there’s ways to act on it, and so that’s really a challenge for us to make sure we’re communicating that to oncologists throughout the US and throughout the world. And I think increasingly we’re seeing that most, most providers now, are getting that molecular testing done and and making treatment decisions early. And just want to end by thanking the patients first and foremost. We are always trying to do better, and this is always bittersweet. When we see advances, because we see progress, but we also recognize how far we still have to go. And I just wanted to thank the the patients in the past who really participated wholeheartedly and in these, this clinical trials and the patients in the future that are still upcoming, and where we hope we’ll have better therapies to offer. So with that, thanks and happy to take some questions.

Manju George 33:57
Okay, thank you, Dr. Kopetz, that was an amazing presentation. As always, you take us through hard concepts, explaining them very simply. So thank you very much. So with questions, in COLONTOWN, people have posted some questions, and I had emailed you them, so maybe we can start with those, f you’re okay,

Dr. Kopetz 34:20
Sure, absolutely.

Manju George 34:22
Yeah. So the first question is, of all the patients on the different E plus C combinations, what’s the longest time in your experience someone has been on it? And the second part of it is, what do you think is the reason? Like, what have we learned?

Dr. Kopetz 34:39
Yeah, great question. I don’t know the answer yet about why. So we’ve had some patients that are now four years or so, on some of these combinations. The front line, chemo, plus a lot of times, what we’ll do is just continue the 5FU and encorafenib, cetuximab, and we’ve had patients on that two and a half years going on three so that really there is a subset of patients who can do really well with it. We don’t understand, we don’t know, if the tumor has some biology that’s called adaptive mutability, which is how the tumors change, in essence, they kind of turn themselves in and increase the rates of their secondary mutations, so that this is one of the ways the tumors can adapt. They start making more mutations. Each time they divide, they have more mutations. And the hope is they, imputing a lot of of intent to them, but the idea is that they, as they develop a lot more mutations they can find, stumble across other mechanisms of resistance. So there is some hint, maybe, that some of these really patients with really long duration don’t engage this adaptive mutability pathway, so their tumors don’t use this as a mechanism. But that’s I think, work that we still have to sort out.

Manju George 36:24
Okay, thank you. The next question is, what advice do you have for someone who was on FOLFOX plus E plus C and is now on maintenance 5FU plus E plus C. Is adding irinotecan to this at progression a good idea. If not, what else can they get?

Dr. Kopetz 36:44
Yeah, great question. So one point, not the question, is that when there’s this inclination, no one likes the pump, I get it, right? There is this inclination and maintenance to say, well, EC is working, what if we just stopped the pump as well as the oxaliplatin, right? And I really, I think that biology suggests that you need that 5FU, so I would say, try to maintain the 5FU now, the great question was, should we add more on to that? We just don’t know, to be frank, on this, I think, there is this sense that trying to put something into it before progression may not be the best approach, but we honestly just don’t have a good sense of this yet. I think we have tried it in some patients where you’ll start to see things kind of creep up. It’s not that full resistance is developed to 5FU and encorafenib Cetuximab, we either add the oxaliplatin in, or, if there’s neuropathy, add in the irinotecan, alternatively, so and that can work. The question is, is that better than than using irinitecan later, we just don’t know.

Manju George 38:07
For someone with a sustained response to E plus C and E plus C plus FOLFOX who is now progressing, what’s the best option next? Yeah, similar question.

Dr. Kopetz 38:19
Yeah. Great question. So there’s a few approaches there. There are studies to say, remember we talked about that these tumors are really dependent on this MAP kinase pathway. So there one approach is to say, well, let’s double down on this inhibition. And there is another protein downstream called ERK and so there’s a next generation ERK inhibitor. We tried ERK once, but that was really intermittent ERK inhibition, and that didn’t work. For the officianados, that had been tried once, but we think there maybe a better inhibitor. So there’s a study ongoing to double down on that pathway inhibition. The other is, we talked a little bit about the plasticity and the state changes. And so we have a study through the ETCTN or the NCI, federal government sponsored study, where we’re trying to use an epigenetic modifier. It’s called a BET inhibitor, but the idea is that it really inhibit some of these state changes. And so that’s a study that’s enrolling right now. And then there are studies to kind of ask questions about, well, what if you go and you do something else altogether, right? Like, if you haven’t gotten FOLFIRI, maybe you go and get FOLFIRI, you give it a break from EC. And what we see is that a lot of times, the tumors will rewire in order to evade the FOLFIRI. Sometimes they’ll shift back into a state that becomes EC sensitive. And so this idea to say, can you do what we call a re challenge, which is do something separate from MAP kinase targeting, and then come back and hit again with the MAP kinase. We see benefits with that with the EGFR inhibitors. This is a RAS RAF, wild type tumors that you can inhibit EGFR and then take a break and then come back and do EGFR alone. So that’s another strategy, but I think there still is a lot more that we can do.

Manju George 40:26
Okay, okay, thank you. So I think that brings us to the next question where people have asked, Can the BEACON and BREAKWATER regimens be reused? And then, if yes, like with EGFR inhibitor, we say, like, four to six months. Do you have any idea what’s the break that people would need?

Dr. Kopetz 40:48
Yeah, we don’t, to be frank, I think, we would typically check Ct DNA to make sure there’s no secondary mutations. All those are uncommon after BREAKWATER. But can be seen. So just make sure those have gone away. Because if you can still see a KRAS mutation present on CT DNA, then maybe it’s not long enough. You give it a little more time. But you’re right, we kind of think about, four month or so time away. It may be enough to have the tumor resensitize,

Manju George 41:25
okay, okay. And then the next question is, for people who miss the first line option of breakwater, what’s your advice on using this in second line or third line?

Dr. Kopetz 41:36
Yeah, great question. I think it does give us confidence that, bringing EC in combination with chemotherapy may be better than EC alone. So the the SWOG study that I showed the one with then looked at and second or third line looked at, in essence, BRAF, EGFR, with irinotecan, and that showed activity. And so I think if, for example, you got FOLFOX alone, I think there’s a rationale to say that you could do an EC, irinotecan, or EC FOLFIRI, in a second line setting. In that sense, all we have are these kind of cross trial comparisons to suggest, so in it, and we don’t have that, what we say level one, randomized data, but that tends to be my practice in those situations.

Manju George 42:35
Okay, thank you so much. The next question is, what’s the status of the E plus C Nivo trial. Do you have some updates?

Dr. Kopetz 42:44
Yes, so we’re going to be so that is a small kind of phase II study that is trying to build on the EC nivo single arm data there. The hope is there’s a subset of patients that may be deriving benefits from the nivo. So that one we should be able to present at ASCO this year. So we’ll have some of that that it was small the control arm was I think less than 30 patients there, but we’ll have that data.

Manju George 43:22
Okay, okay, thank you. So the next is, what is in line next, in terms of new regimens, now that breakwater is done, where’s the field heading? What’s cooking in your lab?

Dr. Kopetz 43:36
Yeah. So we’re really interested in the these epigenetic state, inhibition, I think the the idea to say that, that there’s a subset of cells that are kind of are adapting in some way to evade the those therapies. And if we can understand what those dynamic changes are, then we can potentially, kind of come in with inhibition and and look at different ways, the different vulnerabilities that may come up now. These can take the form of, potentially, thinking about ways to combine it initially, like, how do you extend duration when combination? Or can you understand these paths of resistance and then, kind of treat upon progression? So we’re trying to explore both ways.

Manju George 44:39
Okay, okay, thank you. So I’m done with those questions, and then here we have some Q and A questions. So those who are listening, if you have more questions, please add them in there. So the first question is, if there is a chemo for life patient, is there an argument to be made to do standard of care followed by E plus C or vice versa to prolong longevity rather than use the efficacy of both treatments together?

Dr. Kopetz 45:06
Yeah, no, that’s a, I mean, that is, that’s the angst, and I think that’s what surprises us about BREAKWATER. So the control arm, even if we limit to those patients who and the majority of patients, had access to BRAF, EGFR and second line in the control. So this was that study, in essence, the say standard of care chemo, followed by EC. How do patients live longer than when you put it all together? And the short answer is, it really matters, when you put them all together, that there’s a true synergy. It’s not kind of a one plus one equals two, but you’re getting much more. We think it’s because of and I know this looks like this question was like part way through my lecture, so hopefully I answered it with the kind of explanation of the how we’re trying to constrain the mechanisms of resistance. But I really think the data suggests that in this case, at least, it’s not about stringing it out, but really about bringing the best regimen together at the beginning.

Manju George 46:09
Okay, thank you. The next question is for can this drug regimen be used for patients without a BRAF mutation?

Dr. Kopetz 46:19
Yeah, great question that the short answer is, not, at the moment, there are, there been kind of different areas to explore in this space to kind of think through how you know what BRAF can do. One little bit of an aside is that there has been a recognition that the skin toxicity of the BRAF and EGFR combination is much less than you’d expect with EGFR alone. So the Cetuximab rash kind of acneform, kind of face trunk, but when we give the BRAF inhibitor, it’s actually less. They actually have much less, patients still have some skin rash, but it is substantially less so one of the areas has been like, Okay, well, could you use BRAF inhibitor to try to modulate some of that toxicity? But now, instead of taking it as encorafenib, as a pill trying to reduce that toxicity, there’s a company that’s actually made an essence of BRAF inhibitor skin cream. And so the idea is, could you just put a BRAF inhibitor skin cream on and treat the EGFR rash there? So that’s one kind of creative way where the BRAF inhibitors are being utilized there and I think in some extent, these drugs were engineered to be more potent against the mutated form of the protein. So that mutation is not there, it makes it a little harder to kind of utilize it, although I still think there’s some creative opportunities there, we just have not fully explored.

Manju George 48:07
okay, but in general, like to as a line of treatment for somebody without a BRAF mutation. You don’t generally recommend it?

Dr. Kopetz 48:16
yes, I should just be clear with that. No, we shouldn’t use it. There’s really no data about using encorafenib for anything but that BRAF V 600 E. Now the corollaries we also, I talked a little bit at the beginning about what about other BRAF mutations? And I think the data really has not.. we’ve tried for some of them. There’s different classes as we talk about them and characterize them, we tried these in different ones, and they have not provided benefits. So I know it’s tempting, because sometimes you say, Well, my report says a BRAF mutation, but they behave very differently than the V600E.

Manju George 48:51
Okay, thank you, for those who can only tolerate E plus C alone. Can it be continued once progression occurs, will it slow growth? Does it have to be stopped once progression occurs?

Dr. Kopetz 49:06
Yeah, so good question. We don’t fully understand all the dynamics of it. What we can say is that when we’re doing EC alone, that the mechanisms of resistance tend to be genomic, and kind of a get acquired pretty robustly. So we do think in those settings that kind of stopping the EC is beneficial, and that doesn’t necessarily result in any kind of progression or that continuing, it doesn’t result in more inhibition of the growth.

Manju George 49:46
Okay, so the next couple of questions, like in the BREAKWATER trial, do you have some data on whether people were able to get to surgery to resectability?

Dr. Kopetz 49:57
Right, yeah. So we do. There is some data suggesting, perhaps, that more patients may be able to get to surgery. We just, we need to kind of get that data little cleaner. It’s been a complex area, because there were several years because of the biology of BRAF and the outcomes, surgeons had just said, I’m not going to take a patient with a BRAF mutation to surgery. I just don’t think that it’s kind of beneficial in that regard. I think now the field has shifted a little bit, and people are more willing to do that, and we are seeing that, we are seeing anecdotally even, that some patients that go to the or for resection of their metastatic disease can have complete pathologic responses, which is just really extreme, great response to the treatment.

Manju George 50:53
Okay, okay. And then the next thing is do you have some breakdown of the people on BREAKWATER like, what kind of mets? I think you had the table, right? How many people had peritoneal Mets, and how did they respond?

Dr. Kopetz 51:09
Yeah, we don’t have breakdown by sites. It’s a great question. And so that we don’t have that data to say, you know that this group of patients perform better than the others. We do have in some of our waterfall plots, we can try to tease that out by eye, and then there are kind of we call forest plots, that have looked at that. The numbers are just small, but it looks like, in general, they’re performing better, but we don’t have, like, a breakout of response rate, for example, by peritoneal mets in particular.

Manju George 51:50
Okay, so next question is, what trial options are available for BRAF patients after BREAKWATER, you mentioned the BET inhibitor, right? Like, what else?

Dr. Kopetz 52:02
ERK and the rechallenge are the main ones that are out there right now being explored.

Manju George 52:08
Okay, the next question is, can you speak to any BRAF targeted therapies that are in the pipeline that are expected soon?

Dr. Kopetz 52:15
Yeah, so there’s work on on degraders. So degraders are one space. The idea is, instead of inhibiting it, can you grab the BRAF and just pull it and destroy it? So just kind of chew it up. Now, the cell remakes it, so you have to keep grabbing the BRAF and destroying it. So that’s kind of one of them. There’s been other areas to try to improve upon them. Kind of these next generation BRAF inhibitors that has some characteristics about how the different BRAF and CRAF and ARAF all kind of linked together. So these other family members, it’s B, because there’s an A, B and C, by the way, in case you want to know where the B came from. So there’s these other family members in the RAF family, how they interact. So there are some smart chemists out there trying to sort that out. We don’t necessarily know that they’re going to be better than what we have right now.

Manju George 53:19
Okay, okay. And then what about immunotherapy combinations? Is anything new being tested?

Dr. Kopetz 53:26
Yes, we have the PD-1. And that was done when we are looking back in the preclinical models. And again, always trying to learn everything we can and thinking about other strategies. The intriguing thing is that it really looks like that more than PD-1 is CTLA-4 that is the one that’s driving a lot of benefit, which is a kind of a common theme we’re seeing in in colorectal in general. That PD-1 is okay, but CTLA-4, really, is kind of what induces a bit of greater responses. So there is some intriguing data to say if we had the SWOG study that the encorafenib, cetux nivo study, would a CTLA-4 be better than that. So, these are things that we just have to try to prioritize the questions that we ask and try to understand if that’s going to be better. The other is vaccines. So there are some. There’s been a lot of push. Elicio, for example, the company that’s been generating K RAS vaccines for pancreatic cancer and then for colon and many others have been whispering in their ear to say, think about BRAF. Think about BRAF. So that’s on their radar. And so the hope is that maybe there could be some vaccine strategies to to kind of follow since we are talking about a single point mutation. So it’s kind of well aligned for that.

Manju George 55:06
OK. Next question is, are we close to a CAR-T, options for BRAF V600E?

Dr. Kopetz 55:15
Great question. We don’t see anything. I don’t know I say close, I mean, I think CAR- T’s have just been tough to try to find the cells that can get into the tumor there. So, so I would say we still have a little bit of way to go to even get CAR- T’s, in general, in solid tumors working. But we’re starting to see some, some progress. The difficulty is that you know when you have a single point mutation, that it’s getting expressed by a TCR, and these are really more like TCR TIL therapies where you’re trying to target the BRAF itself is that you’re looking for just a single mutation, and sometimes it’s hard for the immune system to tease out, like, really small differences in there. A lot of the CAR- T options are targeting completely separate proteins that are on the surface of the tumors. So the CAR-T’s are coming in and binding something on the surface that may not be related to V600E, so maybe that some of the CAR- T therapies being developed can be applied to BRAF population, but may not be BRAF specific.

Manju George 56:33
Okay, okay. And then in the BREAKWATER results, do you see a difference in patients who are younger with the BRAF mutation versus the older, right sided tumors. Is there a difference in outcomes?

Dr. Kopetz 56:47
Yeah, so that we have some data on early onset BRAF that says that they are deriving benefit from the therapy just as well as patients that are average age of onset. So I think the you know some subtle differences, but that there are some distinctions. Now, BRAF, in general, tends to be associated with MSI high in later onset BRAF, so I guess the caveat is that early onset less likely to have a BRAF associated with MSI high more likely to be MSS, but within the MSS BRAF, they tend to do the same as average age.

Manju George 57:36
Okay, okay. And then this is my other favorite question. So, with the pharmacogenomics testing, because we are combining E plus C with FOLFOX or FOLFIRI. Do you think that there can be more tailoring of the chemo part of the regimen so that people can stay on it longer? Are there any efforts to do that?

Dr. Kopetz 58:01
So, you know, we’re still, I would say, nascent in our understanding of pharmacogenomics. We know for irinotecan, UGT1A1, there’s some older data about the utility of that to kind of tailor things that really is more relevant for higher dose. irinotecan, kind of saturates a lot of the metabolism transporters, for the doses that we’re giving every two weeks, it’s kind of less relevant. So there has been some discussion like, Well, gosh, could you increase the dose of irinotecan in a patient that may have just the right pharmacogenomic subtype there, and I think that there hasn’t been a lot of work being done on kind of dose escalating the chemotherapy based on pharmacogenomics. But certainly a possibility. The problem is we don’t yet have pharmacogenomics for why the patients are responding to BRAF, for example, so we don’t have good answers there.

Manju George 59:03
Okay, okay, I think we are at time. And thank you so much. This was an incredibly informative talk, and I hope we can have you back when you have new trials and give a talk.

Dr. Kopetz 59:18
Yeah, always a delight.

Manju George 59:20
Okay, thank you. Thanks to everyone who was able to join. And as I said before, a recording of the video will be posted in COLONTOWN University in about two weeks. Thanks. Thank you, everyone. Thanks. Bye. Dr. Kopetz, bye.

DocTalk
2026
Dr. Kopetz
MSS
Trials
Doc Talks

In this DocTalk, Dr. Scott Kopetz, MD Anderson Cancer Center, discusses the much awaited results of the FOLFIRI + Encorafenib + Cetuximab arm of this 1L trial for patients with BRAF V600E–mutated metastatic colorectal cancer. Recorded in February, 2026.

Recommended Resources

Research article
Encorafenib, cetuximab and chemotherapy in BRAF-mutant colorectal cancer: a randomized phase 3 trial
Scott Kopetz | Nature Medicine
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BREAKWATER trial

BREAKWATER trial

DocTalk
2023
Dr. Kopetz
BRAF
MSS
Trials

Dr. Scott Kopetz from MD Anderson Cancer Center discusses the BREAKWATER trial with PALTOWN Scientific Director Dr. Manju George. Recorded in May 2023.

Manju George 0:00
Hello everyone. Welcome to DocTalks. I’m Dr Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN. And today we have the pleasure of having Dr. Scott Kopetz with us, who’s going to tell us about the BREAKWATER trial. But before we start, Dr. Kopetz can you tell us how you got interested in doing clinical trials and working in GI oncology?

Dr. Scott Kopetz 0:25
Most certainly. So I think, like many, I had personal reasons to get into oncology. I lost my mother to cancer at a young age, and so I was motivated to tackle this, and ended up in GI oncology, because I just fell in with a wonderful mentor, Paul, who was here at MD Anderson at the time, and was working in colorectal cancer and just kind of fell in love with the clinical problems and the wonderful patients of course, and really have been inspired ever since by all of our patients.

Manju George 1:08
Thank you for sharing. So then, do you want to share your screen?

Dr. Scott Kopetz 1:11
Yep, absolutely. Yeah. So just delighted. This is always so much fun. And I just start by saying, really a delight to be able to discuss and to share some of the updates here, and want to touch on some of the efforts that are ongoing. I know it’s been a little while since we’ve had an update, and so I’ll start with a little bit of background, and then dive into where the field is now and where we’re going. So some conflicts: very involved in a lot of these companies that are involved in developing novel therapies for BRAF. So kind of a key point I always like to start off with, and so apologies for those of you that have seen this slide a dozen times before. But the idea is that this is a cancer that when we have a BRAF mutation, it results in activation of growth factors, or a growth signaling pathway, right? This is a normal, healthy pathway in your body. When you cut your skin, your epithelium- your skin cells, turn it on to grow and repair, and then it gets turned off. The problem when there’s a mutation in the pathway like BRAF is that it’s constantly on and these cells are then growing. And what we found, though, is that these cancer cells like to be in this state, and that when you inhibit BRAF, with a medicine like encorafinib, that you indeed can shut down that pathway. The growth turns off, but the tumor adapts. The cancer likes this state. And then in cancer terms, we talk about this as homeostatic regulation. It’s like the thermostat: If it’s hot or cold, things get turned on or off with your heat or AC to adjust, and it’s the same thing with with cancer cells. And so there’s a transient inhibition, but the tumor adapts, has all these feedback mechanisms. The wiring that turns on other things upstream through the EGFR receptor is one of the prominent ones, and then what happens is that same signaling pathway gets turned back on.

Dr. Scott Kopetz 1:11
So the fundamental concept, and why we are using combination therapy and BRAF is because when you inhibit that second node, the EGFR, then you can shut down that adaptive mechanism, and so the combination provides benefit where either one alone doesn’t. So of course, this is the rationale behind the BEACON study, which looked at the encorafinib, the cetuximab, the BRAF and EGFR, compared it to chemotherapy control, then and looked at both triplet with a MEK, which didn’t provide any benefit, or the doublet with the BRAF and EGFR, which showed very nice results and improved overall survival, increased response rate, was a nice building block then for us to now become a standard of care, but also recognizing ways that we want to improve.

Dr. Scott Kopetz 2:42
So one way to look at this is to say it’s clearly active providing benefit from patients. There’s a subset of patients who can be on this regimen for a really long time. There’s also a number of patients that get some benefit for several months, and then the tumor adapts and progresses. So one of the questions is, well, why is that? And one of the areas that we’ve been able to characterize is really understanding these mechanisms of resistance. This is a complex slide, but what I want to do is just to have you visually look at the control and looking for any red mark, and a red mark means there’s some acquired event in the tumor. You can see very little evidence of red but when you look at the treatments with the BRAF and EGFR, you see all of these red marks. These red marks are predominantly around RAS mutations. There’s some other ones. But really, this idea that KRAS and NRAS can get mutated, the tumor mutates those in order to maintain that addiction to that growth signaling. And so, there’s an example here of a case study. And this is something I reported last year at ESMO. And this is a patient that was on the trial and at the time of progression, after about eight months on treatment that we looked in the tumor by circulating tumor DNA. So all of these KRAS mutations. These are all present in different subclones. And this is a real challenge, right?

Dr. Scott Kopetz 2:42
How do we prevent these subclones from growing out and developing resistance to the therapies? So put a pencil on that -we’ll come back to that, and some interesting hypotheses coming on that, but just acknowledging that, that’s one of the limitations that we’re dealing with. So where’s the field going? This is a good foundation, as I mentioned, and I’ll talk about some of the studies here briefly, and not really focusing a bit on BREAKWATER study, which is our first-line trial, really trying to understand how we best utilize this.

Dr. Scott Kopetz 2:42
So first, let me share some of the preclinical data that’s ongoing, and asking, “Can we do better? Is the idea of targeted therapy and more traditional chemotherapy, can we combine those and get more benefit out of that?”. Well, one of the findings that we had when we looked at this in our mice work is–in the mouse, we can generate the tumors, we can treat them with one therapy, and then move into second-line in the mouse, and then, compare this to when we do it altogether. And what we can see is that this interesting phenomenon. We think about chemotherapy and targeted therapy is two different things, but the reality is that there is some degree of cross-resistance between them, meaning that when a tumor develops resistance to chemotherapy, itcan sometimes develop resistance to the BRAF inhibitor, even though it’s never seen the BRAF inhibitor, and then vice versa. So these are kind of complex figures, but I think the way to look at it is to say, here is the benefit of encoafinib in this model, when you give encorafinib and cetuximab in first-line, the tumor has never seen a chemotherapy. However, if you give chemotherapy first, wait for the tumor to progress, and then give the BRAF and EGFR, you don’t get as much benefit. So these models aren’t under control for as long. And interesting– the same with the chemotherapy, so the prior targeted therapy may impact that. So the question is that sequential may not always be optimal in that situation. And so when we look at this and say, ‘Well, what if we put them together? What if we put the chemotherapy together with this?’.

Dr. Scott Kopetz 2:42
If you’re not used to looking at these mouse model graphs, what you’re looking for are tumors that are shrinking, going below the lines. And here you can see in the blue, these are the lowest, the best, and the combination of the targeted therapy and chemotherapy may actually induce more activity. So some of the conceptual rationale behind the BREAKWATER study: This is a large international phase III study that’s ongoing, and I’ll show you some of the data from the safety lead-in which was just ensuring, as we thought, that this would be safe to combine chemo, either FOLFOX or FOLFIRI, with the encorafinib and cetuximab. The ongoing study from phase III has three arms currently as you can see here. We don’t have any results from that, so nothing I can share yet on the randomized portion. Well, I’ll share some of the really promising data on this safety lead-in. First we should reflect and remember that chemotherapy alone in first-line gives us about a 40% response rate, the targeted therapy about a 20% in the later lines. And so we’re looking at some of these response rates, now the combination and seeing in first-line now 68/75% of the patients are having their tumors shrink down by more than half in volume. And even in second-line, where we expect maybe a 10% activity of the chemotherapy, you can see really promising, 40 or so percent shrinkage. and that duration of response is really fairly long. So remembering that with encorafenib-cetuximab we’re seeing duration of responses in under six months or so, we seem going much higher. The other way we can look at it is these progression-free survival curves where we’re seeing PFS’s that are really promising here, even in second-line, where medium PFS is somewhere in that four to six months with our current standard of care now, these small cohorts see really promising data. So, just acknowledging encouraging numbers, these are small cohorts, but I think giving us in the field a lot of enthusiasm that we’re going to see benefit with these combinations.

Dr. Scott Kopetz 2:42
Alright, so let’s go back to this–what about the mechanisms of resistance? So, a little complex– throwing a lot of scientific terms out here, but you we can actually look and see what’s changing in the tumor. And the bottom line is that when tumors progress on chemotherapy or targeted therapy or the combination, they actually have a very different pattern. And you see a number of different changes that suggest that we’re constraining the potential mechanisms of resistance, and that when you give the cancer fewer opportunities to progress there are fewer solutions to the problem of how to grow it in this regimen, what we see is that means that the tumors have a longer period of disease control. So I think the biology is really suggesting that.

Dr. Scott Kopetz 2:42
Now, interestingly, if we look at not BRAF colorectal cancer tumors, but if we look at patients that don’t have a BRAF mutation or a RAS mutation, these are ones that would benefit from the EGFR inhibition alone. There’s some data that we presented just recently in 2 JCO papers that reflect on the fact that RAS mutations occur in 40 and 20% KRAS and NRAS of patients treated with an EGFR inhibitor alone, but when you combine that in first-line with chemotherapy, it turns out that less than 10% of patients develop one of these secondary alterations. So we’re going for more than 50% like we see in BEACON, acquiring these secondary alterations. Now, when we combine it with chemotherapy earlier on, you don’t see the tumors picking that mechanism of resistance of acquiring RAS mutations. So we don’t know, I think it’s going to be really interesting to find out, but the same could occur, right? Can the combined chemotherapy prevent some of these acquired RAS mutations? Now this kind of makes sense, if we recognize that RAS mutations actually don’t result in resistance to chemotherapy, right? So RAS mutations may be the easy way out for developing resistance to the BRAF, but when you’re giving a combination, the tumor has got to find a way to grow through the BRAF inhibitor and the EGFR inhibitor, and through the chemotherapy. And if the acquired RAS mutations doesn’t result in resistance to the cytotoxic chemotherapy. Well, that’s not a solution to the tumor to grow. It’s got to find a harder way an alternate way. So this conceptually makes sense, that we’re cutting off pathways of resistance that may occur. Now the other question that we’ve asked is, well, this combination chemotherapy, we know that at some point with oxaliplatin, we need to stop the oxaliplatin. We use these maintenance regimens. So how do we do that optimally?

Dr. Scott Kopetz 14:26
And and the mouse modeling at least, suggests, probably what we would think makes sense, which is, you can’t just do maintenance with encorafenib. You need both encorafenib and cetuximab, and then also that you may get some benefit by continuing some of that 5-FU alone with it, as we had been alluding to, resulting in some of the alternate mechanisms. So we really think that the maintenance regimens, and this is how it’s written in the study, should be like a 5FU, encorafinib, and cetuximab, once a patient has received a maximal amount of oxaliplatin.

Dr. Scott Kopetz 10:19
All right, so where else is the field going? I’ll share a little bit about some of the updates in the IO space here. And this is building on some nice data that MAPK pathway inhibition, can enhance some of the immune responses in BRAF patients. And so this is that actually, from Ryan Corcoran’s group, looking at – these are old studies that we have done in years past, looking at, in responding patients, it turns out that you see an evidence of immune infiltration. And when you look at paired biopsies from patients who were gracious enough to consent to those, you see this increase in these these T cells. So we know that even though there’s no immunotherapy given in these figures, that just the targeted therapy alone may drive an immune response. And so there was nice data for those interested, looking at a BRAF, MEK, PD-L1 that is in that prior publication, thinking about how do we build on encorafinib and cetuximab, a nice trial led by Van Morris in our group looking at this, saying, “Can you add a PD-1 on top of this, even in microsatellite stable?”, so a small study but encouraging 50% response rate, which favorably compares the 20% we’d expect with the encorafinib-cetuximab alone. And then increasing the durability of this, and I think really seeing some patients that are having amazing durability to their disease.

Dr. Scott Kopetz 16:43
So that is an ongoing randomized study that’s currently enrolling nationwide for patients in second or third-line to be randomized, encorafinib-cetuximab, with or without nivolumab. So two to one randomization, so every three people enrolled, two get the nivolumab and one with the encorafinib-cetuximab. I will mention as an aside that there’s some data suggest maybe the PD-1 can rescue resistance in some settings. So there is a study, or now a cohort, that’s open– encorafenib-cetuximab-nivolumab at our institution, even if patients that had prior encorafenib and cetuximab, there are openings there. So it’s an option to consider.

Dr. Scott Kopetz 1:11
The final study I’ll mention is the rare subset of patients that have MSI high, which is more immune-sensitive and a BRAF mutation. And this is a trial ongoing that’s randomizing an initial first line setting; Pembro or PD-1 with or without the encorafenib, cetuximab to try to again, show that synergy between immunotherapy and targeted therapy. All right, so with that, just to conclude, I think this group knows: BRAF mutations, poor prognosis. We should be testing for it. We should make sure that this is a known status and that combination strategies are certainly successful, the encorafenib-cetuximab’s, the current standard of care. But hopefully I convince you that there’s some good rationale, pre-clinically and preliminary data from our first 60 patients, of potential benefit when we combine chemotherapy with encorafenib-cetuximab, and that study is ongoing, the BREAKWATER study, but there’s really interesting biology suggesting that you may be influencing and constraining the mechanisms of resistance. So if we can really shut off some of those RAS mutations, for example, that would be a substantial benefit. A lot of other areas, I don’t have time to go through all of them, but just updating where we are with the PD-1 combination: There’s work going on in neoadjuvant in the UK and adjuvant settings here in the US, a number of novel combinations are ongoing, including – I’d highlight this really interesting data that came out of an unbiased screening study with BET inhibition which is a epigenetic modifier in BRAF-mutated colorectal cancer models that was presented at AACR this year, and there’s actually a trial through the NCI network that will be opening up here the next few months to test that in patients who’ve previously been treated with encorafenib and cetuximab. So with that, thanks, as always, for your time and interest.

Manju George 19:37
Thank you very much. So, I think I will ask the first question. For a newly diagnosed patient who is BRAF mutated, with all these trials available, what do you think – if they have access to all the trials, what would be the good sequence for them to enroll?

Dr. Scott Kopetz 20:01
I think if they have MSI-H tumor, about 20% of BRAF patients will, the SEAMARK study, the last one that I showed is a great one, thinking about, how do we combine immunotherapy and targeted therapy. In patients who have microsatellite stable, 80% of BRAF patients, those are ones that we really think the BREAKWATER study is a great one to participate in. I think it is really an exciting study. We really hope it will be beneficial there. After that, if after patients have been exposed to encorafenib and cetuximab in some way, again, thinking about, can immunotherapy rescue that, as Dr. Morris’ study here is exploring, but then thinking also about how these other novel therapies, deeper inhibition of MAP kinase pathway and others may play a role.

Manju George 21:01
So basically, you’re saying that – it’s really nice that, Dr. Morris’ study is now accepting patients with encorafenib and cetuximab, right? Because that was something that people were concerned about. And then the other thing is that, so you really believe that the combination plus chemo is better instead of waiting and then, having that separately and then getting on, say, for example, the Van Morris trial?

Dr. Scott Kopetz 21:27
Yeah, so the SWOG study. Right – and I think, and for patients that are maybe on the control arm, for example, of BREAKWATER, I think the SWOG study is a great one. I think your point’s a good one. Just participating in clinical trials is important, and not all trials will be available to all sites, but we really do think that these are some of the more compelling directions that the field could go.

Manju George 22:00
Annie has a question, “Have you seen responses in BRAF patients with peritoneal mets?”

Dr. Scott Kopetz 22:05
Hi Annie, great, great question, as always. So yes, we have. You know, peritoneal disease is sometimes hard to measure and so response rates kind of get a little murky. Without getting too detailed, peritoneal is a, kind of a strip more, kind of across a surface of a tumor. The way that the guidance is to measure tumors, is that you measure the longest dimension of the tumor. So if you think of a strip of cancer, you’ve got to kind of measure that the long dimension. So even if the tumor kind of shrinks down this way, it doesn’t really get reflected. So you will see lower response rates. But part of that’s a bit of a function, a little artificial, just how we quantify the responses, and so you don’t always appreciate the extent of that, but yes, we can see responses in that setting.

Manju George 23:07
OK. I have a question about the schema of BREAKWATER. It seems that they have many cohorts, some of them, I think the main studies, like FOLFIRI plus encorafenib, plus cetuximab, and then they have an additional cohort, like a side one cohort D or something, where they are combining with FOLFOX. And then I also heard that there is some kind of prioritization that patients would be first enrolled into the encorafenib plus cetuximab arm. So, these are some of the questions that patients have, if I’m a newly diagnosed patient and I’m considering BREAKWATER, what are my chances of getting into each of these arms? Because, for example, if I’m just going to get into encorafenib plus cetuximab and I won’t get into a combination arm, then patients are thinking whether that’s a good strategy for them first, to get exposed to it, because then you can’t get on, it shouldn’t narrow down the options that are available to them later.

Dr. Scott Kopetz 24:01
Yeah, right. Yeah, it is. And I think it is important things to understand; So a little clarification: There are some amendments coming to BREAKWATER, really to focus that down a little bit more. And what we’re seeing is that the FOLFIRI component will be evaluated in a bit of a later point, and won’t be part of the initial randomization. So it’s still going to be a FOLFOX based chemotherapy backbone. Just to say, there are some changes coming that will make it a little more condensed and I think a little more patient friendly. Because I think the arms that we really are interested in is, how much does the combination of chemotherapy and targeted therapy compare to what right now is considered the standard of care, which is the chemotherapy alone. So that’s the main question. And I think the goal of really trying to get to that question as soon as possible.

Manju George 25:08
Okay, okay… okay – we will see if there are other questions. I think Annie had maybe one more.

Dr. Scott Kopetz 25:15
Oh yeah, how full SWOG 2107 is right? So, yeah, it’s enrolling. There’s still openings. And I suspect at least over the next six months or so, we’ll have openings there as well.

Manju George 25:33
Then she’s asking about class two and class three mutations.

Dr. Scott Kopetz 25:37
Yeah, great. Yeah, the class two and class three. So class one, is the BRAF V600E. The other mutations in BRAFget separated out into two different classes of therapies. There were some low levels of activity that were presented with a number of different trials. It was a little heterogeneous across many different kinds of settings. Not a great home run evidence of activity in colorectal cancer there. So I’m not sure we have a great solution to those yet, but the rationale is still there. I think part of the problem is that these are very heterogeneous, like not all class twos behave the same, not all class threes behave the same. So it is a little hard to sort out, and they are a bit rare, but we’re learning. We’re making progress. There’s hints of activity, but not any amazing responses yet.

Manju George 26:45
There’s a question from Katie, are you able to get into the BREAKWATER trial, as a second line of treatment?

Dr. Scott Kopetz 26:52
So not into the BREAKWATER. Even though I showed some data from the safety lead-in that included second-line patients, that was just in the safety lead-in. Right now, in the randomized phase III portion it’s patients that are previously untreated that are entering. So the second-line would be more the SWOG 2107 study, enco-cetux with or without PD-1.

Manju George 27:18
Yeah, I think Annie has a question. We had a few patients on the BREAKWATER trial, what is the best next treatment? I think you had mentioned some in your talk, right?

Dr. Scott Kopetz 27:26
Yeah, good question. If they were on the chemotherapy arm, they could then go over to the SWOG study, for example. If they were on the encorafenib-cetuximab, or the combination arm with chemotherapy and encorafenib-cetuximab, then, at that point, you’re right thinking about, if they were just on encorafenib-cetuximab, you could certainly think about chemotherapy at that point. Or, like mentioned, there are clinical trials ongoing in that setting to try to explore.

Manju George 27:27
With the safety lead-in, there were some differences in results with FOLFOX and FOLFIRI, right? So, I’ve heard some people ask, with FOLFIRI, there were some interactions, and the drug availability was less… or something. And then the main randomized portion of the trial is now with FOLFOX, but then the long term data show that FOLFIRI as acombination has been better, right?

Dr. Scott Kopetz 28:35
Yeah, so, we don’t really know for sure, I think it’s fair to say. I hate to make too much out of these cohorts of 10 or 15 patients and try to combine in one or the other way. So I think I would be a little more cautious there. There’s a little bit of a PK interaction as I was mentioning, so you don’t get the same exposure to the drugs as you would normally. But not sure that’s playing a big deal based on the results that we’re seeing. Like you said, it was certainly encouraging. So I think that the data really suggests that there’s substantial benefit with the FOLFOX out of the safety lead-in so I’ve been very comfortable in recommending that to the patients. I don’t think we’re missing an opportunity necessarily, on the right partner.

Manju George 29:31
Okay, okay. And then once they finish the chemo plus the Encorafenib+Cetuximab potion, then are you thinking that, say for example, if they don’t have access, we have many – because BREAKWATER is open worldwide, we are fortunate to have the SWOG 2107 right? But many other countries, they don’t. The the idea of combining encorafenib plus cetuximab with nivolumab isn’t that common. So do you think that in that case, they can get LONSURF+bev, or once they progress on the trial, what options could they consider?

Dr. Scott Kopetz 30:08
Right, yeah, so, there’s always the alternate side of toxic regimens that may make a difference. LONSURF+bev I think certainly is reasonable as well. So we do, you’re right, just kind of lean back on what kind of works in general, in colorectal cancer.

Manju George 30:23
Okay, and then, when you look at the resistance mutations, there are so many met amplifications and things like that. Do you think STIVARGA (regorafenib) has worked for people? I’ve seen that some people prefer to use STIVARGA when they get progression on encorafenib plus cetuximab. So what is your personal —

Dr. Scott Kopetz 30:44
–Yeah – we don’t – It’s not great data on that, necessarily. I think it’s a reasonable option, but I don’t know that it’s not something we’ve seen pan out in our preclinical studies, that we’re driving towards a more sensitive phenotype to regorafenib, but certainly a reasonable option.

Dr. Scott Kopetz 31:05
Okay. Were there any learnings from ANCHOR CRC trial regarding PFS or OS to those without peritoneal mets?

Dr. Scott Kopetz 31:14
Yeah, so ANCHOR was a study looking at the encorafenib plus cetuximab plus a MEK inhibitor, and that was running in parallel with BEACON, and we learned from BEACON that the MEK was adding more toxicity, not adding as much benefit. So it’s a little harder to extrapolate some of the ANCHOR data otherwise, but I think what we recognized is that the PFS was kind of in the same range as what we’d expect with the chemotherapy alone and the OS, likewise, looked encouraging, but it was non-randomized for the OS, which makes it hard to interpret. So, the breakdown by with/without, peritoneal metastasis is not really well laid out.

Manju George 32:00
Okay. And then could you say something more about that BET inhibitor trial?

Dr. Scott Kopetz 32:11
Sure. So, this is through an unbiased screen where we asked, ‘if you have a patient or a tumor on encorafenib-cetuximanb, and we screen 1000s of different nodes for ways to modify and we find a node that really tends to be a vulnerability of the cancer, and that turns out to be a bromodomain, which is a regulator ofgene expression. And so there is actually an inhibitor of bromodomain, so we were able to then show the benefits there and bring that together into a clinical trial. So there’s a bromodomain inhibitor plus encorafenib and cetuximab. What it’s doing is, really for those aficionados, is deeper inhibition of the MAP kinase, as well as shutting down MYC signaling, which is a key survival mechanism. So it’s a really way to inhibit MYC, which is one of the key oncogenes.

Manju George 33:09
Okay, I think it’s sort of hard to get the word out to BRAF folks about this trial. Has enrollment been fairly brisk at NCI centers and academic centers worldwide?

Dr. Scott Kopetz 33:22
Uh, let’s see. So I’m not sure which trial?

Manju George 33:27
I think BREAKWATER.

Dr. Scott Kopetz 33:28
Oh, BREAKWATER, yes, it is. It’s going, you know, first-line studies are a little harder, because a lot of times we don’t always know the BRAF status by the time that patients start treatment. So it’s not quite as fast as BEACON but it’s going reasonably well. We’ll get it done. Not always as fast as we like, but we’ll get it done. And I think we’re kind of on track on projections at the moment.

Manju George 33:57
Yeah, yeah. I think that we are working with Pfizer to get, in COLONTOWN University, we are going to be having a featured trial, we’re doing that for BREAKWATER. So my other question would be, since you have those mouse lines that seemed very interesting, where you’re doing sequential treatment and testing, what kind of resistance develops. Are you also doing experiments where you’re doing the encorafenib plus cetuximab plus FOLFOX and seeing what else you can give those mice?

Dr. Scott Kopetz 34:25
Right, so, we haven’t pursued that. I think it’s an interesting area to say, ‘how do you even improve upon where the BREAKWATER is going to be’, right? But no, we haven’t started that type of work yet. But I like the way you’re thinking, let’s take a step ahead.

Manju George 34:44
Yeah, because I’m sure that in a year or two, then you’ll have lots of enrollment, and then people are going to be asking, ‘what next?’.

Dr. Scott Kopetz 34:53
So that’s right, – have something ready – because that’s right… we’re looking for good post docs to do that. If anyone knows of some good post docs out there, let us know.

Manju George 35:02
Okay, okay, yeah. So Annie says it was great to see that there was an epithelial to mesenchymal transition in preclinical research. Is that showing up in BREAKWATER patients too?

Dr. Scott Kopetz 35:15
Good question. We don’t know. You know, we don’t have progression biopsies on patients on BREAKWATER, orany biopsies, for that matter. So as phase III, they tend to not have that same degree of translational research. So we’ll have blood, but we can’t always assess some of these transition states, like you mentioned Annie, in some of the samples that we’re collecting. So we’re going to rely on other ancillary, smaller phase II studies or preclinical models.

Manju George 35:48
Okay, I think we have gone through this really fast.

Dr. Scott Kopetz 35:53
Wonderful. Yeah, no, that’s great. Well, thanks so much to everyone for the time and interest and happy to answer any other questions that come up offline.

Manju George 36:03
Thank you so much.

Dr. Scott Kopetz 36:06
Thanks.

Manju George 36:07
Bye

Dr. Scott Kopetz 36:08
Bye bye.

DocTalk
2023
Dr. Kopetz
BRAF
MSS
Trials

Dr. Scott Kopetz from MD Anderson Cancer Center discusses the BREAKWATER trial with PALTOWN Scientific Director Dr. Manju George. Recorded in May 2023.

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Categories
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KRAS therapies for CRC

KRAS therapies for CRC

DocTalk
2022
Dr. Kopetz
KRAS

Dr. Scott Kopetz from MD Anderson discusses the latest KRAS-directed therapies for colorectal cancer with Paltown Scientific Director Dr. Manju George. Recorded in April 2022.

Table of contents

0:00 Introduction
1:46 What is adaptive resistance?
3:45 Lessons learned from BRAF inhibition in CRC
4:16 Targeting MAPK signaling & adaptive resistance
5:19 Pathways to resistance
7:33 KRAS mutations by tumor type
9:00 KRAS G12C inhibition
11:35 Sotorasib in CRC
12:18 Adagrasib in CRC
13:00 Adaptive resistance to KRAS G12C
23:00 How to combat adaptive resistance?
25:45 CodeBreak 101
27:00 Common mechanisms of resistance to G12C inhibitors
28:40 Summary so far
30:04 Combinations with KRAS G12C inhibitors
31:52 Beyond KRAS G12C
33:05 Clinical development of RAS inhibitors
35:19 KRAS G12D inhibitor- preclinical data
39:15 Other approaches
42:49 Conclusions
45:30 Q & A

Manju George 0:00
Hello Everyone, Welcome to DocTalks. I’m Dr Manju George, the Scientific Director of PALTOWN, the nonprofit that supports COLONTOWN. I organize DocTalks, which are Zoom video talks from expert clinicians from the field on topics that are relevant to colorectal cancer patients and caregivers. Today, we have Dr. Christopher Lieu with us. He’s the Associate Director of Clinical Research and the Co- Director of Gastrointestinal Medical Oncology at the Colorado Cancer Center. He’s also the Vice Chair of the NCI Colon Task Force. Very excited to have you with us, Dr. Lieu, and he’s going to tell us about CtDNA tests for cancer screening and about the CIRCULATE-US trial. Welcome.

Dr. Christopher Lieu 0:43
Thanks so much, Dr. George, and thank you so much for the opportunity to talk to you all today about circulating tumor DNA and an upcoming trial, or newly opened trial called CIRCULATE-US, where we’re trying to utilize this new technology to change the way we treat earlier stage colorectal cancer. So thanks for taking the time. These are my disclosures: I do want to mention that there is a contracting agreement between Natera and my institution, University of Colorado, and in regards to Natera, just mainly because they’re one of the companies that produce CtDNA assays.

Dr. Christopher Lieu 1:17
All right, so what are we going to talk about over the next 30 minutes? We’re going to go back. I know that you have already had great talks from Dr. Cohen and Dr. Kopetz in regards to circulating tumor DNA, and we’re going to build on that, but we’re going to take a little bit of a step back. I’m sure you’ve talked about circulating tumor DNA, or heard of it in terms of earlier stage, or even the utilization of this type of technology in later stage colorectal cancer. But what about screening and primary prevention of colorectal cancer? What we mean by that is essentially anybody who hasn’t ever been diagnosed with colorectal cancer, we want to prevent those cases. So where can blood based tests really make a difference? We’re going to talk about screening just in general initially, and we’re going to talk about screening rates within the United States, but we’re going to start then to talk about where CtDNA may be appropriate in primary prevention of any cancer. Of course, this includes colorectal cancer, and of course we want to follow up with a discussion about what CIRCULATE-US is in regards to the utilization of CtDNA for stage III colon cancer.

Dr. Christopher Lieu 2:24
So this is going to be a big background that everybody already knows about colorectal cancer, because this group that’s listening to this talk is, – you guys are really the experts, but it is good to go back to the basics and talk about, what is the landscape of the epidemiology to risk factors and screening for colorectal cancer. We know that this is the third most common cancer diagnosed in the United States, and the estimates for the number of colorectal cancer cases in 2022 are over 100,000 new cases of colon cancer and over 40,000 new cases of rectal cancers. So this is a tremendously big problem, and certainly something that this group knows a lot about. And of course, the risk factors for colorectal cancer include risk factors for a lot of cancers, including being overweight or obese, having physical inactivity. A little bit different than a lot of other cancers is this idea that a diet high in red meats, processed meats, or cooking meats at very high temperatures, is a risk factor for colorectal cancer. And of course, these are some foods that a lot of people like a lot. So if you eat barbecue, it is a risk factor for colorectal cancer. This isn’t an announcement to say, “don’t eat barbecue”. But of course, it does mean that we certainly want to limit how many processed meats, or red meats or high cooked or high temperature meats we eat on a daily basis.

Dr. Christopher Lieu 3:41
Smoking and alcohol use are significant risk factors for a lot of different cancers, but of course, we always worry about genetic risk and hereditary genes impacting our ability to develop a colorectal cancer. But this still is a vast minority of cases of colorectal cancer that have a genetic component to it. Familial Adenomatous Polyposis is only 1% of the population. Lynch Syndrome, which is the most common inherited cancer risk profile for colorectal cancer, is only 2 to 4%. So these are some really interesting charts in regards to the incidence of colorectal cancer by age. And so when you look at the population that’s 55 and older, you can see these dramatic decreases in the incidence of colorectal cancer. And this really speaks to the power of primary prevention. This idea that if you screen for colorectal cancer, if you get a colonoscopy and remove polyps, you can really reduce the incidence of colorectal cancer. That’s the big take home message. Of course, this group is also very familiar with the fact of the incidence in our younger population. So what you’re looking at here are graphs from 20 to 49 and you can see this inflection point in the 1980s and the 1990s where the rates of young onset colorectal cancer really started to increase, and then it increased year over year. Many of the people in this group and listening, and certainly the physicians and providers, would tell you that seeing young patients with colorectal cancer is really obviously still devastating, but it’s becoming, unfortunately, more common.

Dr. Christopher Lieu 5:13
Another way to look at this data is to look at colorectal cancer incidence rates by birth cohort, and you can again, see this inflection point that those born 1960 to 65 and then onwards. You can see this incidence increasing. Now I do have to tell you that early onset colorectal cancer is, of course, still rare, but if it increases by 2 or 3% every single year, then you can tell that even though it’s still a rare event, it’s becoming, unfortunately, more frequent. The United States is not the only country documenting an increase in early onset colorectal cancer, and those countries highlighted in red are showing similar trends. So this is a worldwide phenomenon, and not solely restricted to the United States. So the first take home point that everybody here already knows is that the incidence of colorectal cancer, particularly rectal cancer in young patients, is increasing. And this figure that you see here shows the duration of bleeding of having seen blood in the toilet before diagnosis, and this is stratified by the stage of diagnosis. When you look at older adults, the onset of bleeding to diagnosis of cancer is usually about 25 to 28 days. Here, if you look at some of the patients that were diagnosed with stage IV disease, on average, they were waiting over a year between the time that they had their initial symptoms and the time that they were actually diagnosed. And the longer that time takes, the more likely it is that you’re going to have advanced colorectal cancer, as opposed to an early stage colorectal cancer. So how do we prevent colorectal cancer? We don’t always talk a lot about screening as oncologists, because we’re usually taking care of patients after they’ve been diagnosed. But the problem with this is that there’s so many guidelines out there that it can be very confusing in terms of what patients should actually do. But of course, the American Cancer Society several years ago actually was very forward thinking and they actually decreased their age to start colorectal cancer screening from the age of 50 to 45 and I showed you the data as to why they wanted to change that. For people ages 76 to 85 the decision to be screened should be based on a lot of different factors, including how healthy that individual is. And the recommendation is that people over 85 should no longer get colorectal cancer screening.

Dr. Christopher Lieu 7:29
In terms of what tests that people offer, there’s stool-based tests and there’s visual tests. The stool-based tests include looking for blood in the stool, and that’s called a FIT Test or Fecal Immunochemical Test. We have this general fecal occult blood test, and there’s even a stool DNA test, which we’ll talk about. But of course, the gold standard is colonoscopy, because not only can you visually look at the colon, you can also remove polyps that may eventually turn into a cancer. There’s also CT imaging that’s available, and a flexible sigmoidoscopy looks at the first third of the colon, but cannot reach the last two thirds of the colon. The United States Preventative Services Task Force also has guidelines. This is our most conservative guideline group because their expectation for the level of evidence is quite high. So they really, really look at the data and say, well, the data doesn’t support certain screening, then they don’t recommend it. But if it does, then they do recommend it. Their Grade A recommendation is still for adults age 50 to 75, but the big update here in 2021 was a Grade B recommendation for 45 to 49 which means that these patients likely really should be screened. And, the more patients that get screened, the more we can prevent cancer. So your second take-home point: everybody should start screening at age 45 or 10 years before the youngest case in the immediate family. So if a first degree family member was diagnosed at the age of 40, then you would start screening at the age of 30. For patients 76 to 85: just consider the patient’s health. Then a colonoscopy is the gold standard, because it’s preventative and potentially treatable as well.

Dr. Christopher Lieu 9:10
Just a quick note from Dr. George that if you guys have any questions as the presentation comes in, feel free to put it into the chat. In all honesty, feel free to just unmute and ask the question even as I’m speaking. I’d love for this to be as interactive as possible. All right.

Manju George 9:26
Dr Lieu, then I have a question.

Dr. Christopher Lieu 9:28
Sure

Manju George 9:28
So my question is, what about polyps in the family, and how does that affect when you have to screen?

Dr. Christopher Lieu 9:36
So it really depends on the type of polyp. It’s such a great question, because I think that this really gets overlooked. If you have your typical tubular adenoma, and you get those things clipped off, and then the risk of having colorectal cancer, from a familial standpoint, is quite low. There are some times that patients have really, really advanced polyps, basically these polyps that have really high grade dysplasia and you can tell that in the next one or two years, you can tell that that patient is actually going to develop a colorectal cancer. And that’s why it’s actually so critically important to know that if you have a very advanced polyp that has significant malignant potential, we should treat those patients as if they already had a colon cancer. So, kind of complex. It’s certainly one of those things that when you get a colonoscopy, you get a polyp removed, it is good to ask, “Hey, was it a really benign polyp, or was this a really scary looking polyp?” And if it’s a scary looking polyp, then you go and tell your entire family. Great, great, great question!

Manju George 10:32
Okay, thank you.

Dr. Christopher Lieu 10:33
Absolutely! When you look at colorectal cancer screening across the country, there are disparities here. And actually, one of the questions I really wanted to ask the group was, well, what is the biggest predictor of getting colorectal cancer screening? You’ll find the answer as we go through the next several slides. But is it race and ethnicity? Is it income? Is it even geographic distribution? You can tell that your rate of colorectal cancer screening actually differs by by state. So if you’re living in Texas, for instance, then the rates are 62% which is obviously much lower than we want it to be. If you look into northeast: Rhode Island, Massachusetts, New Hampshire, Maine, they have 75 to 76% screening rates. And the goal here is, obviously would be 100% but in all honesty, even having 80% would be really, really, tremendously impactful, and you can see that there’s a difference across the entire country. Well, what about sex? So if you’re male or female, does that make a difference? In here, there’s a little bit of a difference between females and males, but for the most part, it’s relatively the same, and has stayed that way over time. What about age? It does make sense that as you get older, there’s increased use of screening. Maybe there are some other health factors, you’re seeing your doctor more frequently. But it is interesting that as you go from 50 to 64 and then from 65 to 70, there is a pretty significant jump in terms of who’s getting screened. What about race and ethnicity? It’s interesting because I thought that the disparity gap here would be wider. It’s not quite as bad as I thought there would be, but there is a disparity gap, and so even when you look at our Native American population and our Asian population, interestingly, those are some of lower rates of screening compared to some of the other groups that you’re seeing here. But for the most part, there isn’t a huge difference. But what I’ll tell you seems to be the biggest discrepancy, or disparity between colorectal cancer screening and groups is actually your insurance status. And I think that that’s actually one of the big take home points, is that if you’re insured, you’re going to get screened, and if you’re uninsured or underinsured, only half of those patients are actually getting screened. So it does tell you that a lot of these things, you can actually have an impact on. But it is interesting data.

Dr. Christopher Lieu 12:43
All right. Well, what about tumor DNA-based screening approaches for colorectal cancer? We’re here to talk about circulating tumor DNA, and we’re going to talk about — I see the question from Annie about right versus left sided primaries and screening methods. So that’s such a great, great question, and I’m actually going to answer that a little bit later over the course of the talk, because for these tumor DNA-based screening tests, you want to make sure that you can detect cancer on both sides. To go back to visual screening methods like flexible sigmoidoscopy and colonoscopy, if you have a left sided primary you should be able to see it on colonoscopy and flexible sigmoidoscopy, but because flex sigmoidoscopy only really looks at 1/3 of the colon, flex sigmoidoscopy is definitely going to miss the other two thirds, particularly the right side of primaries, because you’re just not looking. But of course, with even with colonoscopy, sometimes you can miss the right side of primaries because either the prep is not very good or, you know, because it’s just harder to get there, and sometimes you can’t even get the scope all the way that far. So the right side is a little bit harder in terms of detecting cancer even with colonoscopy, but colonoscopy is still the best bet to find it.

Dr. Christopher Lieu 13:55
All right, I do want to talk about the first ever DNA test approved for use for screening, and that is a stool-based DNA test. So we talk about circulating tumor DNA, but here we’re actually talking about stool DNA. And what you’re looking at here are the performance metrics between the stool DNA test and fecal immunochemical test, which is basically looking for blood in the stool. You can see across stages the multitarget DNA test does seem better for early stage stage I and II cancer, and then performs about as well for stage III and IV. That question about left versus right is shown on the right side of this graph, and so proximal cancer would be the right side and distal cancer will be on the left side, and then you can kind of see that this test does perform better than than the FIT test. What’s interesting about this is that you can actually even detect pre-cancerous lesions with the stool DNA test. Obviously it’s not as effective in patients with polyps versus cancer. But you can tell that there’s a certain amount of pre-cancerous lesions that the stool DNA test is actually picking up. All right, and that gets us to circulating tumor DNA.

Manju George 15:11
Dr. Lieu? I have a question. So basically, they’re looking for cells from the polyps that are shed into the stool. Is that what they’re looking at?

Dr. Christopher Lieu 15:20
So they’re looking at DNA shed from the polyps into the stool. You imagine that over the course of time, these polyps have some genetic alterations. We know that there’s some early events even like KRAS and RAS and BRAF mutations are kind of earlier events in the development of cancer. But you can actually detect some altered DNA, even in polyps, and you certainly can detect it when there’s a full blown colorectal cancer. So it is interesting that in some of the altered DNA, you can see in some of these higher grade polyps, particularly there’s high grade dysplasia. They are shedding altered DNA that can be picked up by these tests, which is kind of cool, right?

Manju George 16:03
Okay, thank you.

Dr. Christopher Lieu 16:04
Absolutely. I know that you’ve had lectures from Dr. Cohen and Dr. Kopetz in regards to what gets leaked into the bloodstream. When you have a tumor that’s in place, sometimes tumors can shed actual tumor cells that you can pick up and even sequence. They release these things called exosomes into the bloodstream, but when tumors undergo cell lysis, or cell death, they do shed cell-free DNA into the bloodstream. Now the way I always describe this to my patients is that if you have somebody who’s pregnant and you draw their blood, obviously a majority of what you see in the mom’s blood is their own cell-free DNA. These are just cells, normal cells that are just turning over, and there’s release ofDNA into the bloodstream, which gets metabolized by your body fairly quickly. And so that represents a majority of the DNA that floats around in the bloodstream. But a portion of that would be fetal DNA. So you can actually sequence out the baby’s DNA, the DNA from the baby that’s being circulating around the mom, that also gets metabolized very, very quickly. Well, the same thing happens with tumors. So in our patients that have a tumor, a majority of the circulating tumor cell-free DNA in the body is that person’s normal DNA, but there’s a fraction of that that can be circulating tumor DNA, or CtDNA, which can then be sequenced and detected. And that’s really the basis of a lot of the technology that we’re looking at.

Dr. Christopher Lieu 17:39
And certainly, circulating DNA has its advantages. It’s stable – you can actually do mutational testing on it. There are established biomarkers, and it’s a short half life. Why is that important? It’s because a lot of times we get information from tissue, and that just represents one point in time. What’s circulating in the body is happening right at that moment.It gives you this real-time look of what’s happening in the body at that moment. And there’s the potential to do even further genomic characterization from the fragments of DNA that are released into the bloodstream. But of course, the disadvantages are the ones that are critically important, especially when we’re talking about screening for cancer. So not all tumors appear to shed detectable CtDNA. We worry, if a tumor is too small and is not releasing at least enough detectable circulating tumor DNA to capture in the blood, then you may, at that point, not be able to detect CtDNA, even though a patient does actually have cancer. The methodologies for analysis are really complex and expensive andthis idea that you have to filter out a lot of noise. And so part of this is that that noise can even be that as patients age, they develop these mutations that exist usually in their white cells, in their bloodstream, that are not harmful at all and are not precursors for cancer. They’re just these altered mutations that are benign. But we call this clonal hematopoiesis of indeterminate potential, or we call it CHIP for short. And that is that sometimes, as we age, we develop these mutations that exist in some of our cells that are completely benign and have nothing to do with cancer. Well, what if we detect those mutations and say, “Oh, you have cancer”. That would be obviously a real problem. So your take home point, only a fraction of cell-free DNA is circulating tumor DNA, but CtDNA may provide a real time look at what is happening in the body.

Dr. Christopher Lieu 19:33
And so there’s a couple of points as we kind of go into this idea of utilizing a test to detect cancer for the first time. One of the things that people ask is, “Well, why don’t we just use CEA?”. CEA is a blood test, and a protein that we look for in patients with colorectal cancer. And sometimes we can trend CEA to determine if a cancer is getting better or getting worse. But a CtDNA is better than CEA. What you’re looking at here is CtDNA versus CEA positivity in different stages of cancer. What I want to show you is that, particularly in earlier stage colorectal cancer, CtDNA definitely outperforms CEA. You can see that with CtDNA being on the left and CEA being on the right. You can see that CEA isnegative in a lot of patients that actually have cancer, whereas when you look at CtDNA for stage II and stage III colorectal cancer in particular, it’s almost never negative. Which means that when it’s positive, there’s definitely cancer there.

Dr. Christopher Lieu 20:41
I want to talk about two tests that are currently under investigation. One is colorectal cancer specific, and one is just looking for cancer, period. There are companies that are certainly developing both of these right now. So this is a multimodal circulating tumor DNA test looking at the primary detection of colorectal cancer. This is called a LUNAR-2 assay. Essentially what both of these tests are doing is they are looking at something called DNA methylation. And aberrant methylation signals in tumor, versus benign tissues, are different. Therefore, if you see this methylated DNA, you might be able to detect cancer earlier. And this is the test case: There were 434 cases, 271 controls, and this is the distribution by age in the controls and in colorectal cancer. Really what I want to show you is essentially this slide. What you’re seeing here is the overall sensitivity for this assay for patients with colorectal cancer or without colorectal cancer. You can tell that the overall sensitivity is unbelievably high: 91%. In the age cohort 45 to 84 which is traditionally the group that we’re looking at to detect colorectal cancer, it’s 90%. You’re seeing this high sensitivity across stages: stage I and II, stage III. Specificity is this idea that if you detect cancer and if the test is positive and you do have cancer, what is the accuracy there? And it’s 94%. So the key here is that again, across stages, it’s a really, really highly sensitive test. That’s what you want in any good screening test. Then this question of left sided versus right sided, it’s actually detecting cancers pretty well, maybe even slightly better on the right side versus the left side. And then transverse, there are not as many cases. There are only 17 cases of colorectal cancer, but it was 82% sensitive in that case. So a really, really interesting test, and I think this is really interesting early data. What they did was, – the company, Guardant – has a trial where they enrolled 12,750 patients to detect colorectal cancer, and we’re hoping to get data in the middle of this year. We’ll find out what the performance of this LUNAR-2 blood test is in the individuals that would normally be screened for colorectal cancer, and we’re going to see how good of a test this is. But can you imagine, drawing a blood test to screen for colorectal cancer, as opposed to potentially either putting in for a stool sample or undergoing a flexible sigmoidoscopy or a full on colonoscopy. So, very, very interesting, and we’ll see what the data is as they as they come out later this year.

Dr. Christopher Lieu 23:39
All right. So we talked about colorectal cancer. I just want to briefly touch on a multi-cancer early detection test, and this idea that can you utilize the same technology that we were just talking about, but look for all cancers. So imagine a blood test to be able to detect any cancer, and obviously, hopefully at an early stage. We had talked a little bit about this before, but this focus on DNA methylation. The idea is to have a low false positive rate, and we call that “high specificity”. And this idea that if you have a lot of coverage over these methylated regions, not only would you be able to detect cancer, but if different cancer sites have a unique methylation pattern, then you could at least tell somebody, “Well, you may have cancer. We have no idea where it’s coming from”. You might be able to point people towards, “Well, this fingerprint is more suggestive of lung cancer or pancreas cancer or colorectal cancer”. And that’s what this really complex figure basically shows you, is that you can draw somebody’s blood, look at the DNA methylation, and then what they’re really trying to figure out is that, is there a tissue specific methylation fingerprint where a specific methylation pattern might tell somebody, well, we really need to look for lung cancer or liver cancer or colorectal cancer. Because, you can imagine as a primary care provider, if you just get this test back that says, “Oh, we think you have cancer”. That’s not only incredibly anxiety inducing from the patient’s standpoint, it’s also incredibly anxiety inducing from the physician’s standpoint, because then, what do you do? Do you do a colonoscopy? Do you do a full body CT scan? So you can see some risk involved with these tests as well.

Dr. Christopher Lieu 25:29
This is a 15,000 participant study at 142 sites, and essentially what they had was a discovery group and a validation group. Essentially they wanted to see if the test could potentially work in a smaller group of patients, and then look at a bigger group of patients. These patients, some of them had cancer, some of them didn’t have cancer. What this test shows you is two take-home messages. Number one, the sensitivity is not great. It’s 51.5% which means in patients that had cancer, sometimes the test was positive, sometimes the test was negative. The other take home point is that it was a highly specific test, which means that in patients that didn’t have cancer, if the test was negative, they really didn’t have cancer. And there are very, very few false positives, in other words, where the test was positive, but they did not have cancer. So it meant that basically, the test was negative. There’s an incredibly high chance that they didn’t have cancer, and that’s obviously a good thing, but the sensitivity rates across diseases, range very, very differently. So you can clearly tell on the left side of this graph that this test is not a great test for prostate cancer. 11% sensitivity. That is definitely not ready for prime time.

Dr. Christopher Lieu 26:48
Well, what about colorectal cancer? Here the sensitivity is quite good, 82%. And then if you go into liver cancer or even carcinoma of unknown primary, there the sensitivity is 93 to 94% so it’s a big spread. So I would say the data is very promising towards the right side of this graph. Very not promising on the left side of this graph. And I think the main question that you have to ask is, well, will the technology get better? Can we get all of these sensitivity rates really, really high? So again, this is colorectal cancer sensitivity looking at stage I through stage IV. It’s clear that as you go higher in stage that the ability of this test to detect cancer goes up significantly. It always seems like these tests have a harder time with stage I, but the moment you get to stage II and III and IV, it gets actually quite good. I wanted to show you that detection of other GI malignancies. There’s really one take home message, and that is, for all these GI malignancies, it doesn’t do great for stage I, but as you get further into the stages, it does quite a good job of being able to pick up the detection of cancer. But again, the main question that you want to answer is, can this test save lives? We’ll say, additional studies are needed. I think you’re going to see this technology really change the way healthcare is delivered in the future. Right now the question is, is it ready for prime time? And I would say we don’t really know the answer to that quite yet. All right.

Manju George 28:19
Dr. Lieu, I had a question. So, Exact Sciences had a large trial. Is that more like a multi-cancer, or is it more like the Guardant Health?

Dr. Christopher Lieu 28:29
Yeah, so Colvera is really focused predominantly on CRC, although I know that they have data on other cancers as well. It’s interesting, because a lot of these tests that I’m showing you are casting this really, really wide net. Colvera is very interesting in the sense that they’re really looking at two genes. But they found that those two genes really do a great job of predicting for colorectal cancer. So, a little bit different, but dissimilar technology.

Manju George 28:54
Okay, thank you.

Dr. Christopher Lieu 28:55
Absolutely. I’ll just wrap up on this with the last five minutes, because, well, we talked about primary prevention of colorectal cancer. We talked about screening. Well, what about in patients that do have colorectal cancer? What happens to CtDNA in those patients, either postoperatively after surgery, but even during adjuvant chemotherapy? What happens to CtDNA? Does it go up? Does it go down? Does it become detectable? Does it become undetectable? We call that CtDNA kinetics. I just want to show you data from the Japanese group. This is their GALAXY study where they’re utilizing CtDNA, and it’s really interesting data. What this shows you is that postoperatively all the way to 12 weeks, if you’re negative and stay negative, you’re going to do great. That’s the black line. And what you’re looking at here is disease-free survival. Basically, nobody’s recurring, right? So that’s good. Interestingly, if you’re CtDNA positive post operatively, and then you turn negative, that’s almost as good as just being negative from the get-go. So that’s interesting. If you’re CtDNA positive postoperatively, you’re freaking out. – I’m worried, you’re worried. But if you turn negative, then your prognosis is quite good. If you’re negative and then turn positive, then there’s a pretty high rate of recurrence. And if you’re positive and stay positive, these are the patients that here, you’re looking at almost 70 to 80% of those patients recurring even within one year’s time.

Dr. Christopher Lieu 30:25
And I do want to show you that adjuvant chemotherapy can clear CtDNA. Interestingly, there is a 10% clearance rate by doing nothing and it makes you wonder what’s going on in those patients. Are those patients just clearing it due to their immune system? But interestingly, there is a significant rate of patients that even if they’re CtDNA positive, they receive adjuvant chemotherapy, they can clear it. We also know that if in patients that are CtDNA positive and they receive adjuvant chemotherapy, that they do better. And so that’s what you’re seeing in stage II, stage III and stage IV. That if there’s CtDNA postoperatively, and they receive chemotherapy, that their recurrence rates are significantly less. So the real question that everybody in this group wants to answer is, are the findings of this test, which is very, very cool, but is it actionable? Because that’s how we’re going to save lives.

Dr. Christopher Lieu 31:20
So what do we know so far? If CtDNA is positive, the recurrence risk is extremely high. That makes sense. If we detect tumor DNA in the bloodstream, it means cancer is there, and it means that at some point it’s going to show up on a CT scan. If CtDNA can be cleared, in other words, with adjuvant therapy, then disease-free survival is significantly improved, and we know that adjuvant chemotherapy can clear CtDNA. And we also know that if CtDNA is not detected, and it’s not detected over multiple time points, we also know that those patients are going to do incredibly well. This is the overall problem with stage III colorectal cancer, and that is that we’re treating 10 patients with with stage III colorectal cancer to save 2 to 3. I’m going to go through that. Why is that? In 10 patients that have stage III colorectal cancer, 5 of them are essentially cured with surgery. They never needed chemotherapy. In other words, they’re getting treatment even though they never needed treatment because they were cured. There are 2 or 3 that get treated with adjuvant chemotherapy who relapse anyway, which means that we didn’t help them with adjuvant chemotherapy. They were going to have recurrence whether we gave them chemotherapy or not. So we almost gave them chemotherapy needlessly. So essentially, we treat 10 patients to save 2 to 3, which means that we basically treat 7 to 8 patients needlessly with chemotherapy, either because they’re going to be cured or because they’re going to recur regardless.

Dr. Christopher Lieu 32:45
The idea is, maybe CT DNA can tell us who we don’t need to treat, and maybe we can tell with CtDNA who needs to be treated even more aggressively. I want to highlight this study, because this study is now open to enrollment and it’s going to be open up across the entirety of the United States. Essentially the way this trial is designed is that if you have stage III colon cancer and you have no CtDNA detected post operatively, you are then randomized to receive standard of care chemotherapy, which is what we normally do, or surveillance without chemotherapy, with serial CtDNA checks. If you’re negative CtDNA and stay negative, you never get chemotherapy. But if you’re negative, and then turn positive, at that point, you get chemotherapy. You get randomized to either receive standard of care chemotherapy or an escalation of chemotherapy, where we try a three-drug regimen versus a two-drug regimen. We do this because we’re worried that our patients have a poor prognosis when CtDNA is detected. Postoperatively, if you are CtDNA detected from the get-go, you undergo that randomization: either the standard of care chemo, or this triplet combination which represents an escalation of chemotherapy.

Dr. Christopher Lieu 34:00
And so the real question is, is CtDNA ready for prime time? I would say, in terms of identifying alterations in the bloodstream, that it is ready for prime time. But what we’re really trying to answer is, this bottom one. In terms of the detection of minimal residual disease, this presence of cancer, even though we can’t see it on a CT scan. The answer is possibly. Is it ready for prime time? It’s clear that CtDNA can detect cancer, but are the results actionable? And so the idea being, we know that this is an incredibly prognostic tool. It can tell us whether somebody’s going to recur or not, and we know that getting serial testing helps, but will it alter clinical practice? What happens if you get a positive result? Do you increase surveillance? We don’t know the answer to that. Will these tests save lives? So in other words, will a clinical trial like CIRCULATE-US end up showing good data in terms of well, can we use this test to determine who should and shouldn’t get chemotherapy? Can we use this test to determine who needs more chemotherapy? I’m hopeful that we’ll get the answer to that as time goes on.

Dr. Christopher Lieu 35:11
So I know that’s a lot of information in a short amount of time, but happy to – , I know Manju, you had to step aside for a little bit, but wanted to see if you guys had any questions? I see Julie has a question, can you talk a little bit little more about patient selection in CIRCULATE for stage II? Yep. So, I was trying to keep it a little bit simpler, but Julie’s asking a really, really great question, and that is the trial enrolls lower risk stage III, so if you don’t have a ton of lymph nodes involved. But there is this thing called high risk stage III, if the tumor is aggressively moving into other organs, or if a lot of lymph nodes are involved. There is also high risk stage II, where there are features of the tumor that are really concerning for the clinicians, and that’s usually related to how angry it looks under a microscope, or that tumor is actually invading into other organs. You can actually enroll into CIRCULATE if you get outside testing and that test is positive for CtDNA. You can actually enroll into the CtDNA-positive arm. We just want to give those patients the ability to have a chance of getting more aggressive chemotherapy. So if you’re high risk stage II colon cancer, or high risk stage III colon cancer, you don’t traditionally enroll into CIRCULATE, but if you have outside testing that you got as standard of care and you’re positive, then you can enroll. Annie’s asking, “The trial is only in this location in NRG?” Yes. So essentially my hope is that it’ll be open at more than 400 sites across the country. This is a collaborative effort between all the cooperative groups, which includes NRG, so this trial should, honestly, it should really be open within, my hope is 30 miles from every patient, but the reality of it is that it should be open in every state and in most, if not all, major cities.

Julie Clauer 37:13
So in terms of, you know, we have a lot of patients that come into COLONTOWN who would qualify for CIRCULATE-US, but they’re not necessarily looking at clinical trials at that point, because, they’re not high stage. They’re just recently diagnosed. Can you talk about what that conversation could be in terms of, how do they talk to their doctor, about, “Hey, I heard about this trial. What is it? Is it interesting?” Because the timing is, they might be post-surgery, but pre-adjuvant chemo, and so that’s good timing. So talk a little bit more about that, just because it seems like a quick turnaround has to happen, but it’s not necessarily people that are poised to have that quick conversation.

Dr. Christopher Lieu 37:58
So yeah, I think the timing of this is the most challenging part of the trial, and that is this idea that, if most people get seen by medical oncologists, usually a decent amount of weeks after their surgery. Capturing these patients early and getting CtDNA testing so it can inform which arm of this trial you go on is critically important. And so, I think where COLONTOWN and PALTOWN have been amazing is number one, it’s a resource. People are told they have colon cancer, and obviously, understandably, they’re freaking out. So I think the information that’s provided on COLONTOWN University is absolutely incredible. And then honestly, the earlier you can have the conversation, the better. So even before surgery, asking about it, “Is it available? Can I talk to somebody about it?” would be huge, because then everybody knows as soon as surgery is done, that they’re going to start thinking about the study, and they’ll know whether or not it’s even available at their site, or if there’s a practice closer, or within close proximity that they can enroll in. And so I think, honestly, COLONTOWN will find patients way before medical oncologists will. I think just getting the word out would be really cool, because I think, – but it’s a tough conversation, because people are just now getting introduced to this technology, and then they’re talking about clinical trials, and it’s a complex clinical trial. So having that information available and even people to talk to, I think, makes all the difference in the world for our patients but, can also help with a clinical trial accrual.

Julie Clauer 39:41
So let’s say it is available at their location. Would they connect then to the PI, or would they have CtDNA done before?

Dr. Christopher Lieu 39:54
Yeah, so I honestly would connect either through ClinicalTrials.gov, which would show the sites. Honestly, the easiest way to find clinical trials, and this is just in general, is to really ask the doctors in that area to see if, –because if they don’t have CIRCULATE open, I’m sure that they’ll actually know who does. But then also contacting the PI even like Dr. Dasari or myself, is always, I think, easy, because we’ll happily direct people to the right place.

Julie Clauer 40:26
Great, thanks.

Dr. Christopher Lieu 40:29
And then, can either a Signatera or Reveal test qualify for high risk stage II? It’ll need to be a Signatera test.

Julie Clauer 40:37
I have an unrelated question, but it drives me nuts. So now we have a lot of awesome tools that are using blood tests, like, you can get your biomarkers from a liquid biopsy, you have CtDNA to detect whether you have cancer, whether you have MRD, but it gets really confusing in terms of what to call these tests if you don’t call them by the brand name. So it’s like trying to explain to a patient like, “Oh, no that’s a liquid biopsy, but it’s a different liquid biopsy than the one…”. So is there an easy terminology of what to call these different tests? Because you say a CtDNA test, and some doctors still don’t necessarily differentiate between the different tests. So anything that can help on that end, because it gets super confusing.

Dr. Christopher Lieu 41:25
Absolutely, I think we’re all learning this new terminology, right? And I would say whenever you’re talking about: ‘is there cancer or not’, we should just call those MRD tests or minimal residual disease tests, that’s probably the easiest way. And if we’re looking for mutations in patients with stage IV cancer, we’re just basically looking for – we wouldn’t call those MRD tests or minimal residual disease tests, we would call them, I think maybe the easiest way to describe it is almost like a liquid biopsy to look for mutations. That’s essentially what you’re doing. And so I think the easiest way to kind of think about is, hey, if it’s trying to determine whether cancer is present or not, MRD is probably the way to go. And then the question, is this for rectal? Well, so CIRCULATE-US is only for colon cancer. Rectal cancer is a little bit tough, because a lot of times patients are getting a lot of therapy even before surgery. In fact, they’re getting almost all their adjuvant therapy before surgery. So this study is only for colon cancer, but these assays can be used for rectal cancer as well as colon cancer. And then Annie mentioned that for those over 70 with a high immunoscore. Yeah. The question is, is it only CtDNA? Could it be a combination of immunoscore and CtDNA? And I would love to see those collaborations in the future, because it may not just be “it’s one test to rule them all”. Maybe it’s a combination of different factors to help us make these determinations. But we’re starting with CtDNA, and then we’ll have to look how immunoscore may be added to this to help our decision making.

Julie Clauer 43:03
In terms of sensitivity. So we know this sensitivity is really high for for MRD tests, but there seems to be some things that tend to be more questionable, right? So lung mets, or maybe, the location of mets, if you’re stage IV. And I know we’re not necessarily talking about it in terms of stage IV, but a lot of patients are doing it or age or things like that. So is there any kind of good understanding of where, within colorectal cancer, how the sensitivity changes by either location of tumors or age or other facors?

Dr. Christopher Lieu 43:39
Yeah, we had talked about the age and the fact that sometimes patients have mutations that don’t have anything to do with cancer, so that can be a confounder that we have to be very careful about. But then, this idea that maybe we’re missing small lung metastases or peritoneal metastases, where they’re in the lining of the abdomen, I think that’s what keeps us up at night, right? And this idea that, are we going to miss patients that may benefit from chemotherapy? Are we just going to miss patients period that have cancer and we just can’t detect it? I think we mitigate some of that by having serial testing. Testing that’s done over the course of time. And so if patients are negative and they stay negative, that’s good. If they’re negative and they turn positive, that’s what we worry about. But I think that therein lies the risk. We want these tests to be perfect, but no test ever is. And so the question being, is it good enough? And that’s what we’re trying to answer. And then the testing is on site. I think for the study, they’ll get collected by the teams, and then they’ll be sent off, but oftentimes, these companies do offer at home blood draws.

Julie Clauer 43:42
It is very compelling, for patients from a trial perspective, and is in terms of cost. All those testing costs would be covered as part of the trial.

Dr. Christopher Lieu 45:00
That’s correct. Great question, Julie, that’s correct.

Manju George 45:04
This is about CHIP. So a test such as Signatera, you don’t have to worry about CHIP, right?

Dr. Christopher Lieu 45:11
Yeah, because it’s a personalized assay, and this idea of testing it, getting a personalized assay developed off of that really does help us with a sensitivity. It really does.

Manju George 45:26
Okay, thank you.

Dr. Christopher Lieu 45:28
Guys, thank you so much for taking the time. These are phenomenal questions and you guys are way more informed than even some of our practitioners. It is so fun to talk to you guys, and you guys are asking all the right questions, and really appreciate your interest in this, and hopefully patients will enroll, and they’ll find it interesting. The hope is that we’re going to change the way we treat stage III colon cancer. That is the hope. But at the least, at the very least, we’re going to learn a lot, and we’ll do better, and we’ll be better. So thank you guys. Really appreciate it.

Manju George 46:03
I want to say that we will have the CIRCULATE-US as a feature trial in COLONTOWN University, and our hope is that patients in COLONTOWN are, in general CRC caregivers and the patients in the public will be able to access it and find more information. The video of this talk will also be linked there, so we are hoping that this will be a great educational resource for everyone involved. Dr Lieu, thank you so much for your time, this is excellent.

Dr. Christopher Lieu 46:32
Thank you everybody. Have a wonderful day.

Manju George 46:35
Thanks everyone for attending. Take care.

Dr. Christopher Lieu 46:38
Bye bye.

Manju George 46:38
Bye

DocTalk
2022
Dr. Kopetz
KRAS

Dr. Scott Kopetz from MD Anderson discusses the latest KRAS-directed therapies for colorectal cancer with Paltown Scientific Director Dr. Manju George. Recorded in April 2022.

Table of contents

0:00 Introduction
1:46 What is adaptive resistance?
3:45 Lessons learned from BRAF inhibition in CRC
4:16 Targeting MAPK signaling & adaptive resistance
5:19 Pathways to resistance
7:33 KRAS mutations by tumor type
9:00 KRAS G12C inhibition
11:35 Sotorasib in CRC
12:18 Adagrasib in CRC
13:00 Adaptive resistance to KRAS G12C
23:00 How to combat adaptive resistance?
25:45 CodeBreak 101
27:00 Common mechanisms of resistance to G12C inhibitors
28:40 Summary so far
30:04 Combinations with KRAS G12C inhibitors
31:52 Beyond KRAS G12C
33:05 Clinical development of RAS inhibitors
35:19 KRAS G12D inhibitor- preclinical data
39:15 Other approaches
42:49 Conclusions
45:30 Q & A

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Tackling targeted therapy refractory BRAF V600E mCRC

Tackling targeted therapy refractory BRAF V600E mCRC

DocTalk
2021
Dr. Kopetz
BRAF

Dr. Kopetz of MD Anderson discusses options for therapy refractory BRAF V600E metastatic colorectal cancer in this Doc Talk, recorded for COLONTOWN in August, 2021.

This is an automatically generated transcript.

Dr. Scott Kopetz 0:00
So thank you all for coming together and spending a little bit of time to talk about how we’re tackling targeted therapy refractory to BRAF, decent center D, metastatic colorectal cancer. I am Scott Kopetz faculty at MD Anderson. I had a few slides just to kind of set the stage and where we are. And then we’ll dive into some discussion on, on, some of the efforts ongoing, just to set the stage a bit, I think this group knows well that BRAF has been a bit of an enigma for colorectal cancer, in the sense that that treatments that have worked well in melanoma did not work well in in colorectal cancer, even though the same drug, same mutation, and so this really kind of sets the stage for a lot of how we are thinking about a kind of a treatment refractory colorectal cancer. What are the key findings? And I have just a few science slides here to show but some of the key findings is that really we have in colorectal cancer, we had a hard time really fully inhibiting that pathway. So when we give a drug, what we can see is that in melanoma, you get really nice inhibition of the pathway. And so what we can see in western blots is where there’s a dark, dark line that’s an expression of a protein. And so this is signaling through this key pathway that we’ll come back to in melanoma, really single dose of the drug, and you get this complete inhibition, you know, whiteness here on this area, but in colorectal cancer, on the top, what’s seen is that you get very transient inhibition, and then the signaling starts to restore. And so this is kind of the science that’s the fundamental behind the issue in colorectal cancer, which is one of kind of adaptive resistance. And so adaptive resistance is, I describe this as really kind of the homeostatic regulation. So networks have a way of wanting to go back to where they were. And so, you know, when you have a really complex system, think about, you know, a the power grid, right? Someone can, can drive into a power pole, knock it down, the lights blink, and the power is back. You know, before you’ve had, you know, a chance to even acknowledge that the lights were temporarily out because the network has a lot of redundancies and other pathways, and is the networks restored. And so the same thing happens in biologic systems. And so cancer has a set point, like a thermostat of where it wants these, these pathways to be, and when you try to perturb it, what the system does is it is it adapts and rewires to try to restore that signal. And so what we’ll be talking about is really this concept of adaptive resistance, homeostatic regulation. So what does that look like? Well, it means that this is our signaling cascade, where we have growth factors that come in, and these are a series of cascading proteins that signal one into the other. And they do these in a way to try to coalesce a number of different signals. So we have this as a very linear process here, but there are multiple growth factor receptors. We’ll come back to that, that all kind of feed down into this growth signaling pathway here. And there’s also amplification steps that occur. So each step down, the signal gets amplified, other inputs get interrogated. So the end results is, you have ERK, which is the factor that really goes in the nucleus and that starts to change the program of the cell. So what happens is, when you give up the BRAF, the here, green is activation, blue is is, is quiet or inactivation. We give a BRAF inhibitor. You get a transient inhibition downstream signaling. What happens is you see all these arrows going up. These are some of the adaptive feedback mechanisms. And what happens is this, these negative regulators then get inhibited as well. So you’re inhibiting a negative regulator. What happens now is then you get upstream activation. And so this is where we see EGFR now, all of a sudden become important. Signaling drives this, and it drives through KRAS and then BRAF is a family of RAF. There’s ARAF BRAF CRAF, right. And within our cell, we’ve got one mutated copy of BRAF and a colorectal tumor. But then there’s a wild type BRAF that’s there as well, right? So they have two copies of everything that get passed along in most cancers. And so what happens is that it can use the existing normal signal signaling, kind of signal around the BRAF, and then restore the pathway homeostatic response. And this is how the tumor so the key finding was that when you inhibit EGFR as one of the kind of key feedback mechanisms, now you block BRAF, you block what pops up, and then your signaling can be inhibited. And so that’s the was the rationale between a lot of studies and just highlighting the one that led to FDA approval, the BEACON study, of course, where we’re looking at the doublet of a BRAF and an EGFR inhibitor versus control. And that was what ultimately the FDA approved as a current standard of care. Now there was another arm, bimimetinib, and that was the MEK inhibitor. And so the idea here was, well, maybe we just need to hit a little bit further downstream with the MEK inhibitor, and that’s going to even any leakage that we had, maybe that’s going to blunt it even further, right? And so that was the hope. Now we know, unfortunately, that this hypothesis didn’t pan out, and that when we looked at the overall survival, we saw clear improvements with the BRAF and EGFR, but the MEK turned out didn’t do anything, right and and you know, part of that is, you know, the balance of toxicities and efficacy, and that’s despite the fact that what we see is, we saw higher response rate, and I won’t show you the data, but you know, we saw that the tumor shrink down more. They just didn’t stay down quite as long, or they stayed down just as long, I should say, is the BRAF and EGFR alone, so that added toxicity didn’t really provide any benefit for patients long term. So, you know, this is where the field has been. And really kind of thinking about, how do we inhibit this, and how do we improve upon it? And what I want to highlight, because this is certainly an area of interest to this group, is how do we really understand signaling at progression and clinical approaches to modulate resistance, and so that really kind of sets the stage. Now we’ve known for many years, and this is now almost worked far as maybe 10 years ago, that at the time of resistance to some of these inhibitors, you get number of different things that can occur, EGFR amplification, KRAS amplification here, and there’s a number of these different things that have been seen circulating tumor DNA has provided a lot of insights into terms of KRAS and NRAS mutations that also appear. One of the key features that we see is that all of these are converging onto what we call a MAP kinase pathway reactivation. So this is intriguing, because in other settings and other tumor types, you may have resistance that develops to a treatment, but it may be four or five very different pathways that may get turned back on right. maybe this pathway over here got turned on in one patient, a different pathway in another patient. But what we can tell, and I think we’ve now seen enough to say that this is probably the vast majority of patients. Then the tumor starts to progress on treatment. It’s still very dependent on this exact same pathway, the matpatus pathway. So even though there is a whole smattering of different mechanisms, they all appear to be going down to the exact same pathway. So it is useful sometimes to understand why patients are progressing on a given therapy. But that doesn’t preclude the fact, even if we don’t know that, we just know by all the studies that we’ve done what the tumor is still dependent on. So in we borrow a lot of evolutionary terms in cancer biology, so we call this convergent evolution, right? And so this is the classic like we learn in biology, that the sharks and the dinosaurs, the reptiles, penguins,dolphins, mammals, looked very different a long time ago, but they all evolved to have a very similar shape, because that was the most efficient when you’re swimming through the water, right? So this idea of kind of multiple different mechanisms to get to the same, the same behavior pattern. So that sets the stage for a number of different strategies. And there are studies looking at Other MAP kinase pathways. There’s a few different ERK studies, so Lilly studies, Asana ERK inhibitors, for example. And then kind of a big study that Novartis is doing, looking at a number of different combinations here. This is a word salad here. I’ll put the PD-1 kind of at the end, and we’ll kind of come back to that one in a minute, because that’s a bit of an outlier in the concepts that we’re discussing in these other items. But the idea here is, how do we learn from these and how do we try to explore what’s going to be best tolerated and give us that best therapeutic window? So we go back to our now slightly tweaked pattern here. This study is actually looking at BRAF, the bratinib, and an erk inhibitor. And so you can see that it’s under my yellow X here. But this is the ltt 462, inhibitor, erk inhibitor, that’s being utilized. And the idea is that we really want to try to block these downstream signaling, but erk inhibitor alone can’t fully shut off signaling, and that that there’s if there’s a lot of signaling from above, there’s still going to be leakage through. So it’s really about, how do you try to tamp down that upstream signaling? And so the three areas that are being looked at are, well, mek, so let’s just BRAF, mek, try to really go downstream. Find best doses for those instead of MEK, there’s others looking at pan RAF. So that’s the LX 254, Pan RAF inhibitor. Remember I said RAF is a family, so it’s kind of ARAF BRAF CRAF so you’re trying to kind of block that bypass where everything upstream is sneaking around, BRAF to get through. So that’s shutting off another leak in the dike, as it were, and then the other is looking at shp2. Now, shp2 is a is kind of an adapter. You also may hear a sauce inhibitors and their sauce MEK combinations being explored, but, but recognizing that there are a number of different rtks, fgfr, EGFR, pdgfr, all these have been implicated at various times or others. And while we think EGFR is a dominant one, certainly we see other ones appearing there for family members as well, and they all feed through shp2 to then activate KRAS. So this is kind of the funnel, you know, it’s a area, and the funnel that, if we hit inhibit shp2 , in essence, where it’s like inhibiting a lot of the receptor tyrosine kinases and so, which is good, but it also can come up with some toxicities, because you’re inhibiting, you know, EGFR and lots of other, you know, her family members and so. So trying to, you know, find these right combinations, our goal then as well. So these are kind of some of the combinations that are being explored in these studies. And this is just showing, you know, the study and how that’s being explored within the water study in particular. But let’s go back to erk inhibitor for just a minute. And again, we’re inhibiting this downstream. And there was some early work, maybe five years ago now, kind of showing in a number in this red box, yellow means more inhibition. That when you give a HERK inhibitor, especially in combination with some of these, that you can improve activity, and that this is another preclinical work now showing that a lot of the doublets here, even the triplets, BRAF mek, EGFR, don’t see a lot of regression in some of these models, but it’s only with the addition of erk top of some of these BRAF targeted strategies that make sense. So you know, there are studies launching looking at BRAF, EGFR, erk, for example, to explore that. And one of the things is that, and this was some really nice work where they looked at Mark good, and this is out of Ryan Corcoran’s Group. So this is a slide from him, where they actually looked at a number of different combinations. And then when they did the combination with the ERK inhibitor, what they could do is prevent outgrowth of some of these clones, right? So the kind of KRAS clones that were present that could prevent those from growing out. So that was, you know, some of the rationale for exploring that. And so I think, you know, just acknowledging, of course, what we know that we need novel therapies. Here we have encorafenib cetuximab. And there’s a lot of work going on about, how do you move into first line or into adjuvant setting? And then some of these, you know, combinations there as well. One final comment about PD-1. So there’s a about 20% of patients with a BRAF metastatic BRAF tumor will also have an MSI high, and that responds well to immunotherapy, but there’s a proportion of patients that progress immediately in immunotherapy and don’t respond. And so there’s a question about, well, what if you target the BRAF, EGFR, and the PD-1, for example, is that something that could be beneficial. And this parallels a whole other area of work that we and others are working on, thinking about PD-1 in a microsatellite stable population. And so there’s NCTN, a large US cooperative group study that’s launching looking at a BEACON regimen and corrective Cetuximab with or without a PD -1 inhibitor for MSS patients. But the Novartis study, for example, is really looking at, can you improve upon outcomes in the MSI high population as well. So there’s a lot of kind of really interesting biology there. So with that, I’ll, I’ll stop and and, you know, take any questions and really make sure I have some time for some discussion around this really interesting area.

Manju George 16:37
Thank you so much for that introduction. So we have got nine questions, and I’ll go through them quickly. The first one was about about the trial design itself. The question was, can the same patient be on two different arms of the trial at two different times, since this is a safety trial,

Dr. Scott Kopetz 16:55
Yep, yeah, there is a safety and then an expansion cohorts in there as well. There’s nothing in the in the trial that prohibits that there are two different cohorts for groups of patients that have not had encorafinib cetuximab before or not any MAP kinase targeted therapies before, and those that have. And so there’s a possibility to go on those that have not had it get treated with it and then potentially re-enroll in the converse. There’s not anything that is in the current version of the protocol that is precluding that, so we’ll certainly be exploring it. The only thing is that if, if a patient has to stop therapy because of toxicities. For example, the you know, ERK caused some toxicities for which one had to stop, then you wouldn’t be able, or wouldn’t, probably want to either kind of go back out of the same regimen. So there is a caveat here.

Manju George 17:55
If a patient has been on the on dabrafinib previously, could they get that on this trial immediately, or is prior dabrafinib an exclusion? If not, do you need to have, okay, okay, so do you need to have an intervening chemo period? Or can they come back?

Dr. Scott Kopetz 18:12
Nope, they can come right in. You know, there’s a requirement that patients have had at least one prior line of chemo therapy. So, yeah, it shouldn’t, shouldn’t be a problem.

Manju George 18:24
Okay, so if they’re on the other like, for example, the -?–emab you know, Dr Corcoran’s trial with the dabrofinib, and they could still come back on the Novartis without any any problems. Okay, okay, good to know. Thank you.

Manju George 18:41
yeah, in between the different trial arms, could you tell us, like, if a patient had to choose, are there particular arms that would be better, and why would you think so?

Dr. Scott Kopetz 18:51
Yeah, that’s a good question. And so, you know, part of it is that with these studies, the way that they tend to work, even a trial that has lots of arms like this, you know, right now, like, if I, you know, somebody that I wanted to put on study this week, there really wouldn’t be any arms available, right? So there’s, you know, the the I think the further we get into the study, the more opportunities and slots, you know, may be available. So it may get to a point where there is a bit of, you know, opportunity to kind of pick and choose, you know, efficacy we just don’t know. And I think the question for all of these is really one of a therapeutic window, meaning how much to inhibit the pathway and really maintain kind of safety. So a lot of work trying to get those doses just right, figure out kind of where things are going to settle down with those treatments. So I think all of them are, you know, based on really good science and good rationale. And I think it’s really going to be a factor of, you know, what doses are achievable and and how effective are we at inhibiting the pathway, and that, unfortunately, just going to come with. Time. So the short answer is, the best arm is the one that you can kind of get on when you need it, you know, I think they’re all very, very reasonable.

Manju George 20:12
Okay, okay, so I’ll just ask one question. So in your talk, you thought that, like with the data, that you showed the BRAF inhibition, the MEK inhibition, and the ERK inhibition, or, you know, this, like that, seems to be having the most, you know, the bars are going down, right? There are some of the arms they’re just taking SHP2. They’re not blocking all the three nodes in a sequence, right?

Dr. Scott Kopetz 20:37
And so acknowledging, of course, that they, you know that one study didn’t, didn’t run, that was in cell culture, right? So there’s some caveats there. And we didn’t really explore all of those different, you know, all of those different combinations, or actually, they didn’t explore all those different combinations. So I, you know, I would be a little hesitant to say that’s absolutely the winner? I think there’s, you know, there’s a lot of thoughts about, well, how do you bring this forward, like, what does the next study look like based on these results? So I’m hopeful that that combination, you know, may be explored, and that’s being explored in other studies, but, but I think trying to think about where one can go with, you know, with a signal like, what is it? What do we need to see in order to move this forward for patients?

Manju George 21:31
Okay, so the next question is, like, we have a patient who has a co occurring, Akt1 e17k mutation. So do you think that particular arm would be better, like with that particular mutation?

Dr. Scott Kopetz 21:43
Yeah, it’s a good question. We don’t have a – it’s a rare mutation, but certainly is activating of that pathway. We can learn from the PIK3CA mutations that have been seen, which is which is slightly upstream of the Akt signal. So the Akt, when it’s activated, PIK3CA, will activate AKT. And when the PIK3CA, when we looked at it, we went into this several years ago, thinking, well, if you had that mutation, conceptually, it seems like maybe the treatments wouldn’t be beneficial. When we looked at some of the earlier data, it actually looked like that for reasons we didn’t understand. The outcomes were even slightly better with the patients who had a PIK3CA, even though you were targeting the MAP kinase pathway and some of the randomized studies that didn’t pan out. So we look at, so I don’t know about the Akt inhibitor alone, but the PIK3CA activating mutations did not appear to be a major, major driver. So, you know, we think about that maybe that mutation was critical early in the development of the cancer, and that as the cancer evolved, it became less of a dominant driver. And it really all became about map kinase pathway,

Manju George 23:07
The next one like I think we have to go quickly so monomer versus dimer, ras inhibitors, and what you know, there is an arm combining both of them along with their inhibitor. If you want to say something about that?

Dr. Scott Kopetz 23:24
So, you know, the idea, obviously, BRAF, we know it targets the oncogene and the wild type BRAF, but you know, the hope for the pan RAFs is that it can help modulate, you know, the other signaling around, kind of the leakage, as we talked about, around that. So, so, you know, that’s, I think, you know, hopeful that some of these pan RAF inhibitors will be more, you know, more effective in this thing. But it still remains to be seen. Again, it comes back to tolerability, right? You know, BRAF’s great because you hit BRAF. And you know your normal skin is okay, you knock out BRAF, but your normal skin has CRAF right? So it can still do what it needs to do with CRAF. So the problem, of course, is if you’re blocking all of RAF, you’re blocking all the raf in the tumor, but you’re blocking all RAF in your skin as well, right? And so or your GI tract, or other areas. So that’s where really trying to make sure that there’s a therapeutic window. So it’s not always what looks great on this simplified signaling diagram, but what is happening in the normal tissues as well.

Manju George 24:29
And safety and toxicity of SHP2 inhibitors. So there’s some data with the KRAS mutant study. So I mean, do you have any advice on what are you seeing?

Dr. Scott Kopetz 24:38
Yeah. I mean, I think shift two is an incredibly interesting class, and I think we’re really kind of excited about the potential there. You know, receptor tyrosine kinases are very ubiquitous throughout the skin, the GI tract as well, and so we need some signaling in our healthy tissue to kind of. Through that. And so again, comes back to the same thing that, you know, it looks great targeting the cancer cells, but it’s, you know, how tolerable is that going to be? And how do we adjust things to look at that we know, for example, EGFR and MEK inhibitors, and we put those together, they’re really difficult to tolerate those two together. Now, turns out, when you look at other different combinations, then it may be a little better, you know, ERK and EGFR may be better. You know, BRAF, MEK, EGFR is much improved because of some of the feedback mechanisms in the skin, for example, so that we know that some of the SHP2 combinations, we may run into some of those same limiting toxicity. So still a little early, but I think very promising.

Manju George 25:53
This was about TKI inhibitors combining with like the BEACON doublet.

Dr. Scott Kopetz 26:00
Yeah. So, yeah. So good question there is, you know, one of the things that Stivarga does is it does have, it’s a multi kinase inhibitor, meaning that predominantly hits a VEGF, so it’s mostly an angiogenic effect. But they also do hit some other pathways, PDGFR right, which is one of those other receptor tyrosine kinases that, in rare cases, can be kind of a dominant feedback. So the concept is certainly, you know, intriguing to think about, you know, regoragenib combined with it. I think that may work in the kind of unique case that PDGFR is the dominant one in a given tumor or patient. But I think the concern is that we see so many other different ways that the tumor evolves and adapts. That concern that it may not be quite as ubiquitous of a solution, although I certainly can acknowledge in a few select patients, it may be.

Manju George 27:04
Letinatinib (?) is also kind of similar in range of targeting multiple…

Dr. Scott Kopetz 27:10
It has maybe a little bit more selectivity than regorafenib, but still very much hits a lot of other things that may actually be driving whatever efficacy we’re seeing outside of that job.

Manju George 27:22
Question about drug availability and addition of slots, for example, in Europe, or –

Dr. Scott Kopetz 27:26
Yeah, so certainly, the largest studies enrolling in Europe, the slot availability is managed worldwide. For this study, like most studies, meaning if there’s no slot in the US, there’s no slot in Europe, there’s not separate slots for for separate separate sites.

Manju George 27:48
We’ve had some off label experiments going on where people have tried, like the BEACON plus ERK inhibitor.

Dr. Scott Kopetz 27:55
Great to hear. And I think, you know, trying that’s the direction I think we need to go as a field to really better understand it.

Manju George 28:04
So when do you expect to report out some of the findings?

Dr. Scott Kopetz 28:07
You know, a lot of these studies are early on, including, you know, Novartis study, a lot of times they’ll want to have the expansion cohorts enrolled before to really understand a little bit better about the safety. So, so it won’t be ASCO gi I think the question will be ASCO, or would it slip into the Fall even?

Manju George 28:33
What about Dr van Morris’s study like the BEACON plus nivolumab? When can we expect some results?

Dr. Scott Kopetz 28:40
Yeah, going very well there. We’ll have some coming out at GI ASCO. I anticipate, again, the results are sufficiently promising that, you know, the follow on randomized study is, is launching, yeah, so the nivolumab for MSS patients, in addition to the Enocrafenib.

Manju George 29:07
So I think the other question is, are you going to add more arms to the Novartis man? Are you expecting more to be added?

Dr. Scott Kopetz 29:12
Yeah, it’s designed for that. So we very well may see some additional arms come in. There’s a lot of arms already, but there’s, it’s designed that new things can come in there, and then the arms will pause at various times when there are efficacy barriers. So, you know, we don’t see a certain amount of activity. An arm may pause enrollment and prioritize other arms as well.

DocTalk
2021
Dr. Kopetz
BRAF

Dr. Kopetz of MD Anderson discusses options for therapy refractory BRAF V600E metastatic colorectal cancer in this Doc Talk, recorded for COLONTOWN in August, 2021.

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Overview of BRAF treatment options

Overview of BRAF treatment options

DocTalk
2020
Dr. Kopetz
BRAF

Dr Kopetz, from MD Anderson, provides an overview of BRAF treatment options for COLONTOWN’s Doc Talk series. Recorded in June, 2020.

Dr. Morris 00:00
Yeah, thank you guys for inviting me in, as you refer to, we really appreciate just the support of COLONTOWN in general. This goes beyond just kind of, as you mentioned, your support for the COBRA trial, and in the BRAF trials as well, which you guys are obviously incredible in mobilizing patients, through social media, but I will say more experientially as well, you know, this group means a lot to my patients. And it’s common for me to have that patient come to MD Anderson, who’s newly diagnosed with colon cancer and is very understandably afraid and, to hear kind of their testimonies with how helpful COLONTOWN has been, and helping them and other patient advocacy groups who have been in helping them to understand kind of what’s going on with the shock of this news in their lives. So we just want to say we as oncologists appreciate your commitment to helping patients in this effort we’re all fighting against. I will say, you know, I realized that Dr. Corcoran had presented I think, a week or so ago. So some of this may overlap, I’ll try to kind of interject my own opinions about this, but there will be some overlap. There may be some slides that we haven’t published yet. But I did want to share these just share our data. So when I hit the slides, I want to share that kind of why we think what we think, but also just maybe ask for those particular slides, just kind of keeping those confidential, because we haven’t really published this data yet. I’m gonna be talking about kind of combining targeted therapies with immunotherapy. And maybe not using a one-size-fits-all approach for the management of BRAF-mutated metastatic colorectal cancer.

So I always just feel that it’s important to start out with, a patient presentation just to kind of put into context what we’re up against here, and this was a patient that I met during my first year on faculty at MD Anderson. She was a 35-year-old lady from the valley in southern Texas who presented to the ER, with abdominal pain, no past medical history at all. She had a 13-year-old son, a single mother. When she presented with abdominal pain her surgeons locally felt that she had issues with their gallbladder and took her to surgery to remove the gallbladder and were surprised, instead, to find a large transverse colon mass with diffuse metastatic disease in the peritoneum that was responsible for the abdominal pain. The pathology ultimately showed a microsatellite-stable BRAF-mutated CRC tumor. She then came to MD Anderson, where, by the time she arrived at MD Anderson, she already had evolved a large bowel obstruction from her tumor. So this was in 2016, we started her on treatment with FOLFOXFIRI. And she had some initial clinical improvement, but unfortunately, within three months of what is really throwing the kitchen sink at this tumor, in terms of cytotoxic chemotherapy, she was already developing signs of clinical and radiographic progression. Within four months of her initial presentation, the single mother was transferred to hospice and it was horrific to watch this unfold as a new oncologist at that point in time, and I think it just really speaks to the challenge we face with BRAF-mutated colorectal cancer, we recognize that this is a unique population with regards to clinical outcomes. As I’ve alluded to, the responses to chemotherapy aren’t great as we’re used to seeing our BRAF wild-type patients, we recognize the unique pathology here just in terms of where these tumors commonly arise from and how they look under the microscope. And with the genome as well we’ll talk about later the high tumor burden may extend beyond the association with MSI high into the MSS setting as well. But also it’s unique with regard to the epigenome and we recognize these to be hypermethylated tumors. I think that this still represents an untapped biology, that is potentially targetable with regards to this particular subpopulation of colorectal cancer, and possibly, with respect to the transcriptome as well, and we’ll talk kind of about CMS correlations a little bit later, too. So we’re seeing a unique but challenging, but potentially intervenable, clinical presentation. And I’ll kind of go through these slides quickly, because we all recognize that the BRAF mutations, even though it’s typically called an uncommon subpopulation of CRC, when you still consider it’s 5 to 10% of all the patients who have CRC and colorectal cancer represents one of the top causes for cancer mortality in the United States. By absolute numbers, it’s still a large fraction of patients who are faced with the challenge of BRAF-mutated, metastatic CRC. And unfortunately, as we all know here the successes of targeted therapies in terms of response rates that other cancer types see with the same exact BRAF mutation, we just don’t see those in data that Dr. Kopetz and then Dr. Corcoran had shown with BRAF monotherapy and BRAF MEK combination therapy, it just we don’t see either the response rates or the survival outcomes, that we’re accustomed to seeing in the context of other solid tumors as well. So this, oftentimes, when I hear people say that we should be treating tumors agnostically to the primary and according to the molecular subtype, I always just cringe when I hear that, because I think that again, that’s a one-size-fits-all approach. And I think that the BRAF V600E story for colorectal cancer is a very good example of why we can’t practice under such an umbrella. This is just kind of data that, again, we’re all familiar with, from eight years ago now, just kind of showing why in the context of CRC, blocking the BRAF V600E oncoprotein with agents that work in other contexts doesn’t work as well, to kind of have this upregulation of MAP kinase signaling, you get kind of this constitutive activation of… I think I say this to say it again, I don’t… correct me if I’m wrong here, but I think I can probably go pretty quickly through the next couple of slides. I think this group fully understands the recent clinical trials, which have led to clinical outcomes, or new clinical options for these patients; but it was really exciting, I think, to be involved early on with Dr. Kopetz as a fellow even, and working on the SWOG protocol, and seeing this translate from an idea in the data that was coming out of the lab, to showing some benefit in patients.

We looked at a model too that is a different model that was initially had disease control with Vemurafenib and Cetuximab. And we saw similar results in PDX, as we were seeing acquisition of acquired KRAS mutations. This is something that in the Vemurafenib study, when they went to the baseline samples of these patients and looked in their plasma, droplet digital PCR sequencing showed the presence of very, very low allelic frequency of KRAS mutants, you can see 0.21%, 0.31% that were present at baseline that are oftentimes below the limit of detection of assays that were available at that time. When we looked at patients who were treated on a phase one trial at MD Anderson with Vemurafenib, Cetuximab and Irinotecan, we saw that in the black here, you see the relative allelic frequency of the BRAF V600e gene in ctDNA. But again, we were finding in patients the same thing that we had seen in the PDX models, that there were these acquired oncogenes showing up in the resistant setting that had not been present in the pretreatment specimens. So our question then, at that time, and this is the data that we took to Array when Kopetz was pitching the BEACON approach, was: can the addition of the MEK inhibitor overcome the resistance to BRAF, EGFR targeted therapies. I also think with the SHP and SOS inhibitors, which are coming out as well, this also kind of represents something we’re thinking about moving forward as well. And again, what we saw on our PDX was, again, when these tumors grew resistant to the Vemurafenib and Cetuximab, if we added a MEK inhibitor, we could see sensitivity; and I think that Corcoran and his group beat us to the punch in publishing this data, but we certainly felt that what we’re seeing in the lab were being validated by his group as well. And so again, it made a lot of sense to us. So, as we all know, these thoughts led to the creation of the BEACON study. This is kind of flipped here, but the overall response rate of 26% with the triplet, and the 20%, with the doublet, beat that of Irinotecan and Cetuximab. And as you guys are all aware, the addition of the MEK inhibitor didn’t add any overall survival difference between BRAF EGFR and, very excitingly, (oh, this should actually be changed)… Encorafenib, Cetuximab, in February or April 2020, became FDA approved. So this was obviously super exciting for us, and for our patients as well. So one of the questions that comes up with our patients when we talk about this in the clinic is binimetinib, is it a non-viable option for the management of patients with BRAF mutated colorectal cancer? And I honestly don’t fully know how to answer this question because I struggle with the idea that there’s a one-size-fits-all approach for patients with BRAF-mutated metastatic colorectal cancer. You know, I think that we realize, clinically, these are heterogeneous patients, and they’re probably biologically these are heterogeneous patients as well, and just kind of talking out loud, it just seems like when we manage these patients, we oftentimes get a lot of more mixed responses and the BRAF mutated context than we do in maybe the BRAF wild-type, I don’t know, if that’s a thing, I’m actually just kind of talking out loud right now, saying that I haven’t really looked into it, but it’s, you just see this more, I think, than kind of in the BRAF wild type where if patients are going to progress, all of their spots are going to be kind of progressing together. Whereas, oftentimes you’ll have responses in two-thirds of the lesions and then massive changes in the opposite direction in the other third. So, again, I think the underlying biologic heterogeneity, as well, is very interesting, and it points to the challenge of treating this disease. We presented this data at ASCO last year. It’s under review right now for a manuscript.

We looked at our cohort of patients at MD Anderson, if you had been evaluated since 2005. And we found 187 patients with BRAF-mutated metastatic CRC. If you were evaluated at our institution, and we just asked a simple question: if we take both ends of the spectrum and compare the differences what do we see? It wasn’t surprising that in the better survival group there were more MSI-high patients; almost 50% of the patients in whom we had data on had MSI-high tumors. But I think that one of the really interesting things as well, is that the median survival from the time of metastatic disease, and this longest survival, was eighty-four months, and in the lowest survival, it was 8.6. And I think that when we, as oncologists see the BRAF mutation, our minds automatically go to this lower end of the spectrum. But I think that we have to kind of keep open minds that there are patients who do have good survival outcomes. When we looked at what is driving out survival in this longest survival group, – what’s driving the long survival outcome? And we saw that was also heterogeneous as well. Some of these patients were able to go to surgery. And as you can see, in the black line here, many of these patients remained disease-free despite having an initial diagnosis of BRAF mutated, metastatic CRC, you know, 5, 6, 7 years out. But interestingly, and as we would expect, as immunotherapy has unfolded, patients who are MSI-high, were also seeing good long-term outcomes. Interestingly, one of these patients had an MSS tumor. But again, there were seven patients that we found who were doing fairly well for long periods of time on MAP-kinase targeted therapies, this included BRAF EGFR options, BRAF MEK options and BRAF inhibitors alone. So, there is some suggestion here to us that there may be a subpopulation of the BRAF mutated who just need targeting in their MAP-kinase, in their particular tumor is addicted to MAP-kinase signaling in the same way that perhaps an EGFR-mutated lung cancer may be addicted to that EGFR mutation, and being equally sensitive to tyrosine kinase inhibition in that context as well. So, I say that to say that even the drivers for favorable outcomes in the study are heterogeneous and do not always conform to what providers can assume. So, I talked about how this is still ongoing, I think, bench to bedside to bench and back to bedside success story, but how can we lift that tale further.

Obviously, in the MSI setting, response rates, even with a concomitant BRAF V600E mutation, is very good for anti-PD1 with or without anti-CTLA4 therapy. But unfortunately, still within the BRAF V600E context, we feel that the MSI-highs, that concomitant microsatellite instability is still a minority of the patients with BRAF V600E tumors. So, this is where we start getting a little bit more in-depth to our data, which we haven’t published yet, but I did want to share with you. It’s a majority of… we think of BRAF V600E tumors as being kind of high tumor mutation burden. And oftentimes I think the assumption is that, well, there’s this association between microsatellite instability, we all know that MSI tumors have higher mutation burdens and so that’s the reason that BRAF V600E tumors carry this association with having high tumor mutational burdens. We actually looked at four datasets that were available to us: the nursing health data from Memorial Sloan Kettering, data from the TCGA, and then from internal data, we had it at MD Anderson, and we said, let’s pull out the MSI high tumors. And let’s look at just the MSS tumors. And look at the patients and compare BRAF-mutated tumors with the BRAF wild types. We saw the same trends across all four datasets that in general MSS, BRAFV600E mutated tumors harbor higher tumor mutation burdens relative to their MSS, BRAF wild-type counterparts. So this may not be something that’s just MSI-high-driven. And if that’s the case, this may argue for some role of immunotherapy as a component for the MSS BRAF V600E story. We’re also excited to see data that was published in Science last year from Dr. Bardelli’s group in Milan, where they looked at BRAFV600E CRC cell lines and showed that when you treat these with dual BRAF EGFR targeting, you induce, in terms of expression, a loss of expression of the mismatch repair of proteins and can kind of create this transient and MSI-high like state. So, if that’s the case, you know, does that make sense that dual, or I guess, triplet, BRAF EGFR plus PD-1 therapy would make sense in this context. And this is something that we’ve seen as well. This is data we haven’t published yet, but this is from an expansion cohort of patients who were treated with vemurafenib, Irinotecan and cetuximab, – patients with BRAFV600E metastatic CRC. This is an example of a patient with a microsatellite stable tumor, but you can see prior to treatment, you don’t see a lot of immune reactive T cells within the tumor microenvironment, but that upon treatment with a BRAF EGFR inhibitor, you do see recruitment of activated CD8 positive cytotoxic T cells within the microenvironment. So that suggested to us that there may be a role for BRAF EGFR plus immune checkpoint therapy when we were pitching these concepts years ago in our initial letters of intent.

Let’s talk about CMS, you know, we all I think all recognize the role of CMS biology and that again, CMS1 is kind of the immune active group of a subset of CRC tumors, again, often associated with microsatellite instability. We also recognize that BRAFV600E tumors kind of aggregate to CMS1 oftentimes as well. And so our question again was is this association uniquely inherent to this association between MSI high CRC with BRAF V 600E mutations or can you see this in the MSS setting as well. So, we looked at data from the SWOG 1406. And again, it hasn’t been published yet either, but will be kind of forthcoming. And we looked specifically at in the red here from the from the SWOG study. And within the MSS context, the relative distribution of BRAFV600E tumors and as again, as you can see almost half of the MSS BRAF tumors were CMS1, the other kind of large proportion was CMS4. And this is different than what we had seen with an internal cohort of patients at MD Anderson who had MSS BRAF wild types, where you see a very low fraction of CMS1 within the BRAF of wild-type MSS contexts. So again what we’re seeing here is that within this MSS CRC population of patients, there may be some enrichment for a group, at least of BRAFV600E MSS tumors, for this more kind of immunologically hot CMS1 phenotype. We recognize from data that was published by several groups several years ago that already signatures can indeed for their subcategorized, BRAFV600E tumors, BM1, the B RAF mutation, one subgroup, it tends to be more of a kind of KRAS MAP kinase. Whereas the BM2 is more consistent with cell cycle gene regulation. And again, you can see here kind of when they look by CMS subtypes as well you see kind of what we had seen in the in the prior slide in the group where you have more MSS, BRAF mutated tumors, you start seeing more CM4 as well. And I think that it’s a little bit early to know how this will kind of play out but again, kind of argues for the heterogeneous subpopulations within the BRAF V600E contexts.

So I think that, this was the reason that we were thinking, about the BRAF, EGFR PD1 combination, and we’re very excited to kind of see Dr. Corcoran’s data that he presented earlier this summer in virtual Barcelona and then I think to you guys, it sounds like in the recent past here, looking at the Dabrafenib Trametinib Spartalizumab combination. So not exactly the same ideas or it’s just kind of given the mechanism of the BRAF but, I think that one of the things that really stuck out to us was the fact that you don’t see a whole lot of kind of toxicity with this combination. When we approached Array and BMS with this idea several years ago, I think that they internally were worried a lot about the skin toxicity that you were going to see with these combinations. And I think that his early data suggests that, this is a fairly well-tolerated regimen. But very interestingly even though the data are still very early and immature, the gross numbers, just comparing the same BRAF MEK combination with or without a PD1 I mean, it’s really encouraging, like, and it’s very encouraging. And similarly, I think that he saw, kind of with this slide, similar to what I had shown you guys with our multiplex immunofluorescence slide, or data several slides back, but again, that BRAF MEK PD1 does seem to recruit active T cells to the tumor microenvironment for hopeful cytotoxicity. So, this kind of led us to our concept at MD Anderson, which is now enrolling, you know, it’s a trial looking specifically at MSS BRAFV600E mutated CRC for patients who have not had prior BRAF, EGFR, MEK therapies or immunotherapy, I think his trial may have been a little more broader, and its eligibility criteria. But, this was the population we wanted to look at first, to kind of see signal and we put 11 patients on kind of amidst the COVID pandemic and having to stop it for 2 30-day windows to evaluate toxicity. And given the fact that this combination hadn’t been looked at before. And so we’ve enrolled, you know, fairly quickly under this trial, and what we’re seeing is that just kind of as Dr. Corcoran has shown, the safety data is very promising for this combination as well. This is the kind of the selected eligibility criteria for study again, MSS BRAF V600E adenocarcinoma of the colon or rectum, at least one but no more than two prior lines of systemic therapy, and then excluding prior BRAF, MEK or other anti EGFR therapies or immunotherapy. So that trial, like I said, is enrolling kind of at the same time, as we were about to launch, Dr. Atreya at UCSF was interested in looking at a BRAF MEK PD1 combination in the same setting. So we’ve worked with her to kind of get these trials going up in parallel, I believe her trial is open now. And I think that they’re kind of talking to her they’ve been enrolling too. Sorry, I actually don’t know what the safety data is of this combination yet. I haven’t heard that from her. But we presume that it’s going to be well tolerated.

So I want to circle back just to how we can learn from what we’re doing in the lab, and move that forward in this context, as well. We love using PDX models at MD Anderson kind of as I’ve talked about earlier, we feel that these kind of help us to pitch concepts for clinical trials to the NCI and pharmaceutical companies. And we’ve shown again, in data that hasn’t been published yet that what happens clinically, the patients on BRAF, EGFR therapies match what happens in their matched mouse avatar. So we looked at five patients who were treated on the SWOG 1406 study and characterized them by their clinical responses either having stable disease or partial response. And what you can see is that the overall trends for the stable disease patients in the blue mirror that for what was happening in the matched mouse whereas what was happening in the patients who responded clinically to the combination, you see have greater reductions, kind of in the tumor size in their mouse avatars as well. One of the interesting things just kind of anecdotally, just to kind of point out here as well, is that, in some of these mouse models, this was just looking at this one, the patient had a response to vemurafenib, irinotecan and cetuximab. You can see that in this mouse model for this patient, the BRAF EGFR, you know, it developed resistance but then when we added the irinotecan you see a drastic reduction in tumor size, there’s also a trend towards the irinotecan being different than that of the BRAF EGFR. Similarly, here, this mouse model, this patient responded to the combination, the mouse didn’t really benefit from irinotecan alone. But when we added all three, we saw that there was improvement. So, again, it may point, that just the one size doesn’t fit all. And also kind of points to the fact that this heterogeneity that I’m talking about. There is a trial, you know, that’s being developed in moving forward looking at chemo with or without encorafenib cetuximab in the frontline setting. And I think that data like this kind of points, the idea that, hey, maybe there’s some meaningful interaction with chemotherapy and targeted therapies in this context that that we will see. The problem is when it comes to mouse models, these are immunocompromised. So the the ability to study, the encorafenib nivolumab cetuximab combination would be limited in traditional PDX models. So, Dr. Karla in our group at MD Anderson’s, all star, his work to develop these humanized PDX models where tumor tissue from a patient and matched blood is used to create these mouse avatars. And we have funding that’s through an early career SPORE award at MD Anderson to do a clinical trial for our study, to look to see if what happens again in the patient mirrors what happens in with the same treatment combination in a developed humanized PDX model. And likewise, if what you see happening immunologically, in terms of changes, matches what happens in the matched humanized PDX model as well. This was funny, I got through the SPORE award the mentor here is John Allison, who won the Nobel Prize for his work in developing immunotherapy for patients with cancer. And it’s been really exciting to have the chance to work with Dr. Allison on and get his input on the design and science of what’s going on here. This was just kind of work showing some stuff we’re doing with Dr. Tusayan in collaboration with her on this trial, I would also ask this to be confidential and not shared as well, out of respect to her developing technology, but what we’re doing is we’re getting her slices of tumor, from pretreatment biopsies taken from patients on this study. And then she’s slicing these tumors and putting them into individual plates. And we’re testing what’s happening, with various combinations. And this is a patient who responded on our study to the triple combination. And what we saw was that when she treated the small slices of the tumor with encorafenib, and cetuximab by day 18, there was some reduction of tumor cell viability with the BRAF EGFR combination. When we added nivolumab, to that combination, we saw a much deeper reduction in cell viability, I didn’t put the nivolumab here as well, but it was that bar was here. So you didn’t see it wasn’t single-agent nivolumab down here either. So it was interesting to us because we felt that her model could likewise when you have the patient’s own immune cells present within the microenvironment may reflect what’s happening in the matched patient, but also that there may be in some patients some meaningful benefits to the addition of nivolumab. So, I hope that I provided here some rationale for why adding immunotherapy to BRAF, EGFR targeted therapies in MSS BRAF mutated setting makes sense, when these patients historically have been unresponsive to immunotherapy alone. I think we’re all encouraged by Dr. Corcoran’s work. And our hope would be that given the recent FDA indication of encorafenib and cetuximab we can build upon that success with a similar approach, and are certainly working to that and then I think that this will be informed further by preclinical and translational work that remains ongoing.

I was asked just to talk a little bit about atypical BRAF mutations in CRC. These are slides that I borrowed, full disclosure from Dr. Benny Johnson in our group at MD Anderson who really has led our group’s efforts, very valiantly to kind of work. This is a slide I think, had come from maybe Dr. Yeager at Memorial, I’m just kind of showing how the different mechanisms have the traditional RAS independence, BRAF V600E monomer, we associate with a class I, the dimerized. BRAF mutants, we see kind of with class II, and then kind of the, the BRAF inert, class IIIs that kind of has been characterized is these more atypical BRAF mutations. Again, we recognize that, as you can see, in all three of these, the atypical BRAFs tend to fare better than the BRAF V600Es and I would say I don’t think that this is something that all oncologists realize it’s not uncommon, so you get a referral or a call from outside doctors saying, hey, I have a patient with the BRAF mutation can I send them for your trial, and then we find out that it’s like a D594G mutation, kind of one of these more atypicals. So I think this is something we’re really trying to get the word out with oncologists as well, kind of as we learn more. And this is kind of, again, Dr. Johnson here, who I really just want to plug I think, has really had a passion for leading this effort in our group at MD Anderson, but just kind of some of the novel approaches that we’re trying to take at MD Anderson for kind of how we triage patients to various trials, according to their specific BRAF mutation, whether it’s a V600E, or a non V600E. So that kind of sums up what I had to say. I try to be active on Twitter, if you have any questions, please just let me know.

Manju George 37:06
So if I can, I’m going to start the questions, you can hear me, right?

Dr. Morris 37:12
Yes, I can. Yeah.

Manju George 37:13
So you were talking about the heterogeneity, so I was kind of wondering, in the unpublished data that you have, can you said that one part was the MAP kinase signaling pathway, and the other one was a different, you know, cell cycle and all of those pathways? So are you in your different trials are you attempting to find out what those different groups are? And in the reason I asked is, just like you said, we in our group, we find a lot of heterogeneity in how people respond to the different treatments for the BRAF V600E mutation. So it will make sense to us to if we could know what they were, because most of the patients, they already have their genomic testing done. And then if there’s some way to know upfront that you are in the 8.4 months category, not in the 84-month category, then you can plan accordingly how you have to prioritize treatment, right?

Dr. Morris 38:14
Yeah. So I think we’re looking at that we’re certainly collecting biopsies, to look at the transcriptome in RNA sequencing of these patients, and that may kind of inform on what their CMS classifications or BM1 BM2 classifications. I believe that Pfizer is looking at that on the patients who were on the Beacon study as well. So I think it’ll be very interesting if you see here that the BM1 patients are the ones who maybe had more benefit with the triplet, if there was a preferential added benefit with the addition of the MEK inhibitors that the BM1s than the BM twos. So, I’m very interested in this question as well and I hope that we’ll get some information from Pfizer about that. I think that Corcoran had published from his triplet, the dabrafenib, tremetinib, panitumumab work earlier this summer in clinical cancer research some signal kind of saying that, but I think it’ll be very interesting, in a larger cohort in a randomized trial to look at that in a kind of post hoc analysis.

Manju George 39:33
And then my other question would be like, there is this test called immuno score, right? Do you think those kinds of tests can tell you more, I was kind of wondering that if there was any efforts to develop some kind of assays so that you can look at a BRAF patient and say that this would be more BM1 or BM2, even the consensus molecular subtypes if there is, do you know if there is something like that being developed or going on?

Dr. Morris 40:02
I mean, not that I’m aware of I’m sure that it probably is being worked on. And it’s a really good point. But it’s not something that we’re actively working on now.

Manju George 40:13
Okay. And then the other person that you’re collaborating with Houston Yun, like the tissue culture thing. So it’s like an entire section of the biopsies is grown in the wells and you’re seeing that, when you try the combination treatment with the immunotherapy, just with that not inside an animal, you’re still seeing a response. Right? That’s what you said?

Dr. Morris 40:40
Yeah, that’s right. So, I mean, again, like, we’ve put only 11 patients on our trial thus far. And I mean, in full disclosure, with the pandemic, we had to shut down understandably, all optional biopsies for several months. So this limited our ability, thus far to look at this in high numbers, but it is something that we’re opening back up now. And we’ll be looking more stringently to see is there a signal? You always see kind of in the presentations, the N of one? So it’s hard to know for sure iff that’s truly representative, or if people cherry-pick the best for you to show? I don’t know,

Manju George 41:26
Okay. And then you have some results by GI-ASCO. Is that right?

Dr. Morris 41:36
Yeah, I mean, if so, it’d be a late-breaking abstract. I think we have 26 patients that we would plan on putting on study, so we’re just about halfway there. So it would either be a late-breaking, or probably the ASCO next year, we’ll see. We’re moving forward. And we talked to the NCI about what the next step would look like in a more definitive fashion.

Manju George 42:03
So, thank you, let’s see if others have questions. Questions, anyone?

COLONTOWN Member 42:29
Know, I feel like I need to, like, listen to this all again and consume so much information here, it’s been very helpful. But I was really interested to hear about some of the other mutations, you know, that we’re seeing, that are driving when BRAF you know, kind of becomes, you know, less important. So, while you know, I’m, again, I kind of feel like I need to, like review all of that, again, because I don’t think I caught it all. But you know, any other thoughts you have around that? And how we should think about how does treatment progress, as you know, maybe get to the end of what targeted BRAF therapy can do how do you make the decision to move forward from there?

Dr. Morris 43:10
Yeah, I mean, I think it’s a really good question. I think one of the things that hasn’t been fully looked at yet is with what you see in a RAS wild-type setting where there’s this idea of, these patients developing these acquired RAS, KRAS NRAS mutations. And then when you pull away the anti-EGFR therapy, that selective pressure is lost, and that acquired mechanism of resistance decays back down. Dr. Christine, Parsighian in our group had a really nice paper just kind of showing the kinetics of in the acquire resistance study to anti-EGFR therapy, the median half-life is about four to five months. So, before by the time you see 50% of that acquired resistance mechanism go away and then you can re-challenge these patients and see some benefit, and that’s being looked at in multiple clinical trials right now. And then the question is when a patient progresses on BRAF EGFR therapy, is that the end ever in their story and journey for EGFR therapy, or is there a role for rechallenge? None of us knows that. And I think it would be really, really interesting to look at. So I mean, yeah, like I think that’s something we’ve thought about, and I’m not aware of any data out there that’s shown that that’s successful or not successful.

COLONTOWN Member 44:53
Thank you, Manju. Dr. Morris, My name is Rashmi and I’m a caregiver to my husband with BRAF. My question to you is we know the pathway of the BRAF and the EGFR and the MEK and Erk. Looking at the three trials between Dr. Corcoran’s Dr. Kopetz and Dr. Atreya’s it seems that the BRAF and immunotherapy are similar. What’s different is the EGFR versus the MEK. Would you speak something to that? Is there I mean, your study is leaning towards the EGFR versus Dr. Corcoran’s is looking more at the MEK inhibitor?

Dr. Morris 45:39
Yeah, I mean, I think that’s what he’s seeing and the rationale for what we did what we did was similar, I don’t think that we know that BRAF, EGFR PD1 is any better or worse than BRAF MEK PD1, I think for us we realized several years ago that with the SWOG data that probably BRAF EGFR was going to get approved. And how we were going to be able to develop a strategy to, if successful to roll this out to our patients. It made sense in the context of a BRAF EGFR setting. So that’s why we we kind of went with that for approach years ago. He ‘s done a lot of work in the BRAF, MEK. I mean, I can’t speak to why they chose that, but I don’t think that we know that there’s a difference or why or if there’s a difference. Thank you.

Manju George 46:54
Okay, again, I’m going back to the CMS1 and CMS4 subtypes. So in our group, we have patients, we have one patient who has been almost NED, she’s been on the Beacon triplet, and she’s that one patient,who has gotten a phenomenal response. For most of the patients, we see that they’re on the triplet for a certain time, and then you know, things start growing, and then they get back on FOLFIRI + bev and that seems to work really well. So we have a group of patients for whom the FOLFIRI plus bev or FOLFOXIRI plus bev seems to give the best response. So again, I was kind of wondering whether, you know, that goes back to what you said about the BRAF, MEK, ERK pathway being important versus the cell cycle one, because then in that case, the cell cycle one would be more susceptible to chemo, right.?

Dr. Morris 48:01
Yeah, I mean, in theory, yes, but kind of given the fact that, these patients don’t respond in a treatment-refractory setting very well to chemotherapy, whether that translates into, clinical reality, I don’t think we know yet.

Manju George 48:22
Again, like, my push will be to if there could be an assay to tell you what kind of BRAF you are, from a patient perspective, that could make a big difference to patients as to how they approach the different treatments.

Dr. Morris 48:33
It would help us to Yeah, I mean, I think we’re very interested in understanding the different biologies, because again, we recognize it’s not a one-size-fits-all approach here.

Manju George 48:53
I think if there are no more questions, thank you very much for your time, and I guess that people, there are about 250 members many of them will watch the video because we’re going to post this in our group. And then there may be more questions, so then I’ll probably get them to you either by email or on Twitter. And thank you so much for your time.

Dr. Morris 49:20
Thank you, I appreciate it so much.

Manju George 49:23
Bye. Bye. Thanks, everyone.

DocTalk
2020
Dr. Kopetz
BRAF

Dr Kopetz, from MD Anderson, provides an overview of BRAF treatment options for COLONTOWN’s Doc Talk series. Recorded in June, 2020.

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