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CtDNA testing for patients undergoing liver resection

CtDNA testing for patients undergoing liver resection

DocTalk
2022
Dr. Newhook
ctDNA
Stage IV
Trials
Liver
Surgery

In this DocTalk recorded July 2022, Dr. Tim Newhook from MD Anderson discusses the utility of ctDNA testing in patients with resectable liver mets with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
00:45: Dr. Newhook tells us about his path to being a liver surgeon
06:00: What are biomarkers?
07:45: Hepatectomy for CRC liver mets — biomarkers needed
10:16: Adj and peri-op chemo therapy for resectable CRC liver mets
12:15: Rationale for preoperative therapy — what is occult disease?
14:40: Tumor mutational profiling
16:18: Role of RAS mutations, & other mutations?
18:20: What is ctDNA? Types of tests?
22:30: What is minimal residual disease?
25:20: CIRCULATE-Japan results
27:00: CtDNA and liver resection, pros & cons
31:40: CtDNA and liver resection: published studies
42:30: Who is at higher risk of MRD after liver resection?
44:22: Predictors of post-op ctDNA detection
46:10: Can ctDNA guide treatment decisions?
47:49: Multi-D management of resectable CRC liver mets
50:00: NCT05062317-Details
56:00: Conclusions
57:30: Q & A

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN.Welcome to my first Doc Talk of 2026 and for those of you who are joining live, welcome. And I am so excited to have Dr Kopetz with us. And as many of you know, he’s no stranger to us in COLONTOWN. He’s an amazing oncologist, a very well known researcher , who designs these amazing colorectal cancer trials, and is a speaker at all the international and national conferences, and has received so many awards. And in between all of that, he finds time to engage with us, and for that, I’m so grateful. And he has many titles and honors, and I think to us, he’s a beloved oncologist who’s focusing on BRAF and KRAS mutated colorectal cancer. And so once again, I’m so thrilled to have Dr kopets with us to talk to us about the 2026 BREAKWATER updates. Welcome Dr Kopetz.

Dr. Kopetz 1:14
Yeah, thanks so much for such a delightful and kind introduction, and thanks for all that you do, and you really do such an amazing job of educating and advocating. And so we’re so grateful for community, for you as well. So delighted to be able to share some of the updates in BRAF.And I thought during this, I would take opportunity to kind of take a step back with a little bit of history, but then really talk about where we are. How are we thinking about this in 2026 so with that, I had to start with just the complexities that we’re dealing with. Don’t worry about interpreting all this. This is for the gurus in the field. There’s a Frank McCormick, he’s kind of considered one of the fathers of RAS and he’s kind of put together this pathway about all the complexities of how normal cells and then cancer cells signal. We kind of think about, and you may have heard in biomarker testing, kind of the key ways that colorectal cancer can acquire mutations. These can be through KRAS, NRAS mutations commonly, but also BRAF. And BRAF is a distinct entity. It’s probably the one that we were able to target first, but a lot of the lessons that we’re learning, and we’ll come back to this point that in BRAF are now being applied to KRAS G12C, and think in the future, G12D will be following right along in this path. So hopefully these wedges of targetable oncogenes will continue to grow.

Dr. Kopetz 3:05
Okay? I said BRAF was targetable. This now goes back for more than a decade where the kind of first inhibitors which some brilliant medicinal chemists figured out that you could actually target this specific mutation that’s present in BRAF. Now I’ll take a moment to say what we’re talking about is a BRAFV600 E, so it’s the most common mutation, but there are others. Now the others are a little more complex. Everything that we’ll be talking about in terms of targeting is really this most common V600E mutation. Others we’re not fully sure what to do with, because they’re so heterogeneous and complex. But the BRAF V600E, also common in melanoma, and some of the initial studies that kind of a classic one.

Dr. Kopetz 3:54
This is one of the first studies that we ran where we said, okay, let’s treat melanoma. Let’s treat colorectal the same and we got very different outcomes, and that kind of set us off down this path to try to figure out what is it that’s unique about colorectal? How do we better target that? So there’s really two main crux, right? We have to improve the shrinkage of the tumor. And then, importantly, really, really target the durability. And we’ll talk about that, about how can we keep the cancer, shrink it down, and keep it down for as long as possible? So a lot of the work has been trying to do both, and you’ll see progress has been made there. All right, so let me take a step back. If you were a medical student, maybe first or second month of medical school, you would get introduced this concept of homeostatic regulation and how it’s used in the body. But I think it’s a useful concept for us to understand, and it’s this idea that our bodies like to be in a certain condition and that they have feedback mechanisms to keep us in that that condition. And there’s the more critical the pathway is, the more critical that regulation is, the tighter the feedback is present. And it turns out that this growth factor pathway, we call it the MAP kinase pathway, it incorporates K RAS, NRAS, BRAF. Those are incredibly important for cell growth and healthy cell division, and so that the cells, especially the colon cells, have a lot of these mechanisms to keep that level of signaling just right. so this is homeostatic. And Walter Cannon really was the–and you can see how, just by virtue of the picture, how old this concept is, but we still see it.

Dr. Kopetz 5:58
So what does it mean? Well, when we are in normal physiology, you can think about your glucose levels, if you’re not a diabetic, about how tightly regulated that is, but even something simple, like your body temperature, right? So you go out and sit in the sun, your body temperature rises, your brain recognizes that. It then dilates your blood vessels and also induces sweating. And then the response is, your body’s temperature is restored, right? Very simple concept, but it’s this kind of regulation to say your body wants to keep its temperature in this really tight range, and it’s going to do everything it can to maintain that. So the same thing happens after targeting BRAF, right? So in a BRAF mutation growth signaling this tumor cell is has a level of signaling that it wants, and we can give an inhibitor of BRAF, but there are feedback mechanisms that this tumor uses to say, nope, nope. That’s too low. I want higher signaling in this growth pathway. And one of the things that does is it activates EGFR, and it turns out that that then reactivates the growth, and the signaling is restored from the concept of the cancer cell, right? So this is homeostasis from the perspective of a cancer cell.

Dr. Kopetz 7:29
Now, I know there’s a lot of aficionados out there, so if I were to do this and try to do this simplistic Frank McCormick figure, it would look like this, right? Where there’s this signaling cascade, where one protein, activates the next one, which activates the next one, and down at the bottom of that is growth, right? This is the signal that says cancer’s growing. So if we have the BRAF mutation now, green is kind of signaling, an activation that’s just pumping out signal– we inhibit BRAF, what happens? It gets shut down, right? So transiently, it does a good job, but what happens then is you get these feedback mechanisms that get de repressed. EGFR now gets turned on. It now signals around that inhibition. We’re still blocking BRAF, but there’s pathways to get around it, and the signaling is restored, right? So that’s why BRAF alone doesn’t work, because the tumor is adapting so quickly. Now, when you then now come in and block BRAF and EGFR together, that’s when you can shut down the system, right? It can no longer compensate. You block two key nodes and and that was the premise. So fast forward through a lot of clinical trials and work, the BEACON study was the first to really show this, that when you combine BRAF and EGFR, compared to a control arm, you can improve overall survival response rates in this setting, and this was in a later line population, where there’s improvements here from 5.9 to 9.3 months. So improvements, there’s a bit of a tail. This idea that a proportion of patients can really have a longer duration of that as well. And the overall the side effects that you can see here as well. So this was several years back, and resulted in approvals for the second and third line. But we want to do better, right? And so really trying to understand, well, how could we do that? What’s the path forward there?

Dr. Kopetz 9:47
So gonna take a step back to the lab, because I’m a physician scientist. So we tend to do something the lab, bring into the clinic, learn from the patients, bring it back into the lab, and kind of keep iterating. And so throughout all of this, we’re doing a lot of preclinical modeling of cancer. And so, how do we do this? Well, we use mice for this. And why mice? It’s kind of weird, right? Like, why do we use mice? Why don’t we use other areas or other model systems? So it turns out that we actually have a fair bit of similarity with mice, like 95% similarity to mice in our genetic code. A lot of the ways that the our systems work are very similar. And then there’s some practical advantages that we can house them in controlled environments. Can handle them, and they have kind of been used for decades, continue to be used for a lot of this testing, right? And so we’re really really, I think, thankful for the opportunity to learn as much as we can in these systems before we bring to patients, so we’re bringing better things forward.

Dr. Kopetz 11:04
So, you know, just want to advocate. This is kind of what what the mice look like. So we actually use these mice that don’t have any hair, so they’re called nude mice. So, and then a lot of times the tumors are kind of grown on the flanks of the mice, so we can put little calipers around it and kind of measure how things are are going and advancing. Now we take extraordinary care to provide a really good environment for the mice. We actually have veterinarians whose sole job is every day to check on the well being and health of the mice, and they get all sorts of like things to socialize together through all of this. And so just know that we’re trying to be really good stewards of this, and we don’t take this research lightly, but we know that it’s really important for our patients. Okay with that a bit of aside, because we like to show as researchers how can we do things right? And so one of the questions that we were asking is, how can we improve the targeted therapy, and we did an earlier study where we actually combined with the earlier generations BRAF and inhibitors with with irinotecan and we had patients that their disease responded. So we gave chemo, EGFR and BRAF inhibition, and not just BRAF and EGFR alone. And so the question was, okay, we had responders, and it was working, and we had some patients that were really generous, and they said we will be willing to do a biopsy so that you can take tissue out from my tumor and you can study it. And so we’re so thankful for the patient’s contribution to not only enrolling in research, but to support things like this. But what that allowed us to do is say, Okay, I’m going to take that piece of tumor, I’m going to take it back to the mice, just like you saw, and I’m going to grow that patient’s tumor on the flank of the mouse, and I’m going to propagate that tumor, so I can treat many different mice, and then I can treat that tumor with the targeted therapy alone, the chemotherapy alone, or the combination. And then ask the question like, if that model works, what was that the patient was responding to? They got three drugs. But did they need all three? Maybe you only needed two in this or our other one. And we were really intrigued. And I just showed three examples here, where you want to see things kind of going below the lines, the lower, the better, smaller the tumors here. And what we found was that the targeted therapy slowed growth. Chemo slowed growth, in two of the models, but you only really got regressions and things shrinking down when you did the combination. And so that was a really important finding for us. Now it turned out because I wanted to show all the data that one on the far right here. What that said is, you know what? The targeted therapy didn’t do anything. It was all chemotherapy doing the heavy lifting here, we would predict in this patient. And so we kind of expanded that out and looked at some really resistant tumors and showed that indeed, that when you combine this, we were using a full theory regimen, so irinotecan and 5FU, that you could really get these synergies and really suggesting that there is opportunities to improve outcomes and the durability through this. So that kind concept, as well as the idea to say, well, let’s try to get this into more patients sooner, really led to the idea of the BREAKWATER study.

Dr. Kopetz 15:06
And so what did we do? Well, designed this study, randomized 637, patients to a standard of care without targeted therapy at BRAF. Patients could still get BRAF and EGFR in second or third line because it was approved. But the idea is to start with standard chemotherapy in the control arm. Or EC, encorafenib, cetuximab and FOLFOX or EC alone as a kind of a third arm. And so we were trying to gather some data, like, do you need the chemotherapy there? And then we’re looking at progression free survival, response rate. Here’s the characteristics of the patients enrolled, and this really reflects a bit of what we see in kind of general practice here. So what do we see? So remember, we said we want to improve response rate and durability. So first thing we said is, let’s look at response rate. And indeed, if you look at the blue bar with the EC and FOLFOX now we had two thirds of patients approximately responding to the therapy, meaning the tumor shrank down by 50% or more, versus 37% with the standard of care therapy, a little more than a third. And that this was durable, and that was encouraging. So when we get a response and there was some increased durability, now one of the terms that we use to measure durability is progression free survival, as you’re likely aware. And so we looked at that progression free survival curve, what we saw was an improvement in progression free survival of seven to 12 months.

Dr. Kopetz 16:42
So what does that mean? I’m sure many of you are well versed in these curves, but I thought it was always worth to do a little bit of a primer about what this means. These are a measure of any time point along the way, the number of patients that are still receiving therapy and have not progressed. So we can look at this, and for example, we can see about it at six months time frame here, that 60% of patients were still on therapy and were free of progression. And over time, more patients progress, and you can see the curve coming down. And so by the time you get to 12 months here in the control arm, about only 30% of patients were no longer progressing. So we’ll say, Okay, that’s good. How do we describe the curves here? And so you’ll hear this term median, right? Well, what does that mean? Well, it means, really at that 50%, meaning half the patients progress before, half the patients progress after that time point. So the median here we use as our estimate. And you can see, you know, the median is a little over six months 7.1 exactly here in the control arm, but that median is closer to 12.8 months here in the in the experimental arm. Now we can use these numbers and now start to compare across different settings, BRAF has always been a tough or has not always felt to respond well to standard chemotherapy. FOLFOX, FOLFIRI alone, even with Bevacizumab, usually get like 6-7 months. Now, while the non BRAF colorectal cancer is usually around 10 months or, maybe 11 months. So this is really striking, because we’ve taken a tumor that had well worse than your average outcomes, and now with this regimen, now we have a median progression free survival that looks better than all the other tumor types, subtypes of colorectal cancer out there. So it’s a really big kind of chip. And I think, as we mentioned before, we also see this, this tail, and this gets a little noisy because we don’t have as long a follow up yet, but this idea of, this flattening here, and about a third of patients, even at two years, are kind of still ongoing, and that’s a much higher tail, as we say. So, the idea that there’s a subset of patients that we don’t fully understand why, but they get a really durable, prolonged outcome from this. So we need to know more. We need to make more people like that. So that’s one of our goals.

Dr. Kopetz 19:48
All right. Now we talked about, there’s a third arm, if you recall, right where encorafenib, cetuximab was used alone, no chemotherapy. And here’s the orange line for the encorafenib Cetuximab alone. So didn’t do better than the standard chemotherapy, but didn’t do worse either. So it is, it kind of is in that middle ground. The kind of interpretation of this is, you know what this is, typically the the EC alone is better tolerated than FOLFOX. If there’s a patient that is maybe not the best candidate for FOLFOX, can’t really tolerate it well, for whatever reason, there’s an option to at least do the EC alone, and that may be better than than other options for that unique case. But for most patients, we think that that is EC and FOLFOX should be there. Now, progression free survival is important, but remember I mentioned that well, the control arm could go on and they could get BRAF and EGFR right, and so is this just shifting when things are and if that’s the case, for what we really care about is, can patients live longer with this regimen?

Dr. Kopetz 21:08
And so that’s the overall survival– very similar. We use this median to say half of patients now, in this case, are living longer and half are living shorter than that estimate. But what we saw was that the standard of care about 15 months– what we expect on average, but that we’re able to double that number. So really, a doubling of overall survival is a really, a compelling number to see. And so now getting medium survivals that are much, much higher. What about that third arm? Kind of fell right in between. So, it’s not an unreasonable consideration to kind of start with that, but still not as good as the EC and FOLFOX alone.

Dr. Kopetz 21:59
Okay, thanks doc for showing all those complex slides. What does it really mean? So, here’s kind of that graphic summary, thanks to nano banana. I’ll say a little AI generated one. But what you can see here is that really, progression free survival, you’re reducing that risk of progression. And then that survival time is, in essence doubled, going from 15 to 30 months. Those are the kind of the key takeaways. Now, what about side effects here? Most frequent side effects are shown here, in this figure. And what we can see is that nausea, diarrhea, those kind of things that we normally think about with the chemotherapy, is about the same between these and that the real difference here is kind of in some of the BRAF specific toxicities. In this case, it’s looking at arthralgia and rash. So you can see that the combination of with encorafenib+ cetuximab can generate some rash. We use grading systems to grade one two, which means a more mild rash and arthralgia, and still impact quality of life. And so it’s something that we manage and work through with patients.

Dr. Kopetz 23:35
Now, one of the questions that’s come up is like, well, is this better than if we did really intense chemotherapy at the beginning. And so there are regimens where we put FOLFOX and combined with irinotecan and what we call the triplet regimen. And so this was just a bit of an aside to say that we looked at what patients could have gotten some of these more intense regimens, and then looked at some of the survival here. And the bottom line is that it didn’t matter in the control arm, if you use really intense chemotherapy that that really you got the best survival with the with the EC FOLFOX. Now we’ve been talking a lot about FOLFOX, and this is data from last year. So, but what about alternates? So we like our acronyms as we know and so FOLFOX, of course, is a 5FU oxaliplatin. Oxaliplatin is the neuropathy one. There’s the FOLFIRI, it is irinotecan and 5FU. And there are situations where patients, just may not be best served with FOLFOX. They may have had prior oxaliplatin exposure, may have had an early stage tumors, resected, got adjuvant FOLFOX, for example, and then the disease recurred later. Or maybe patients that have kind of diabetic neuropathy, for example, where they have other reasons for nerve damage. And then sometimes it’s just a lot of providers are looking at the side effect profile and just saying, you know, I just think FOLFIRI is a better choice in general to start with. And so all these things now to the credit of the sponsoring company for BREAKWATER they heard us when we said, we really want to have more options for our patients. And we want to generate data as well with with FOLFIRI. Right now, most companies, I would say don’t really do two studies to look at the same thing, but they heard us and and agreed to run this smaller study. So remember, before we’re looking at over 600, here we have like, 140 something patients.

Dr. Kopetz 26:02
And now this is just after the BREAKWATER finished enrolling. We then opened and enrolled this one. Endpoints, response, rate, side effects, very similar here. There was, interestingly less arthralgia and rash in this one, not sure I fully understand it, but it was that’s kind of what we saw there, but really low rates of grade three toxicities in general. So didn’t add much in terms of toxicity. Here again, we saw very similar, about two thirds of patients responding versus about 39% of the control arm there. So encouraging that there’s that much higher response rate, even with a FOLFIRI backbone. And overall survival, really early, we will have some updated data we’ll be sharing in Jun. But that this kind of really nice early separation of the curves that were similar in magnitude to what we saw before. So that’s great. It tells us FOLFOX and EC can be a backbone. FOLFIRI and EC can be a backbone.

Dr. Kopetz 27:15
So wanted to spend maybe the last few minutes and just talk a little philosophically, and that little more of the science here, right? So one of the questions is, wow, we’re doubling overall survival, not by bringing a new drug in, but by taking a drug that we would normally give in second and third line, and now combining it with our first line regimen. What gives? Yes, maybe it’s better, but why a doubling in overall survival? And, I shared some of that kind of concepts pre clinically, and I didn’t get into a lot of the deep science that led us to think that this could really work. But one way to really think about this is that when we give chemotherapy alone, and these are completely arbitrary numbers. We give chemotherapy alone, there may be 10 different ways that the tumor cells can develop resistance. When we give BRAF EGFR inhibition, again, maybe 10 different ways that resistance can develop, including acquisition of KRAS and NRAS secondary mutations, for example, which are really well described and and I didn’t present that data, but this idea that other mutations can develop that can reactivate the pathway. Now the concept, though, is that a new KRAS mutation is not going to make them resistant to FOLFIRI, right? And likewise, some of the resistance mechanisms to the chemotherapy may be blocked by BRAF and EGFR. And so it’s not that the cancer can’t find a way to develop resistance. Gosh, it almost always does, but we’re just making it much, much harder. So the idea is that the shared pathways of resistance are constrained, so that’s this lower level of number of mutation or resistance pathways that can occur. So by putting them together, you really make the tumor work hard to find some mechanism that will result in resistance to the chemo and resistance to the targeted therapy together.

Dr. Kopetz 29:25
Now it’s a great theory. Did we actually see any data about that? Like is what we have there? So I mentioned that, and we did a lot of work and published papers around different mechanisms of resistance to BRAF and EGFR when it’s given alone. These secondary mutations are kind of the key ones that we see. So what we did is presented some of the data on the CT DNA, so you can use circulating tumor DNA to explore the mechanisms of resistance there. And what we showed was that by month seven in the targeted therapy arms of the of the BREAKWATER study that EC alone, about 38% of patients already had these resistance mutations that were developed and evident. They developed KRAS variants, NRAS, MAP2K1, which is downstream, amplifications like MET or BRAF exon deletions, all these things that have been shown. But when we combine it with chemotherapy, now there’s no selective pressure, really, to generate that the chemo can keep the cancer from growing, even with those. And only 6% of patients at month 7 in the combination arm had that mechanism of resistance. And you can see, even at the end of study, after prolonged treatment, that we were seeing much lower rates of these secondary alterations. So we’re trying to and this is really where we are at the frontier of trying to understand this, is kind of the idea to say, how can we constrain the mechanisms of resistance. What are those two remaining shared mechanisms that are allowing the cancers to evade? We don’t think they’re genomic. They’re not acquiring second mutations, necessarily, that’s driving this, but there’s some tumor plasticity, state changes that are occurring. These are kind of the terms you’re hearing in oncology field now about what’s the plasticity of the tumor, like, how is it adapting to these different states? So stay tuned. But this is really where we’re working on it. We’re trying to nip these remaining things in the bud.

Dr. Kopetz 31:42
Okay, so adaptive resistance, you got your primer on homeostasis, right? There’ll be a test later on the homeostatic regulations, but this combination of BRAF and EGFR blunts that. It is a standard of care, but that the chemotherapy combinations have compelling biologic rationale, as well as the really now strong clinical data, doubling overall survival. And so that we do think that EC and FOLFOX, and I would say EC and FOLFIRI as well, are a new standard of care in the US and and I think this is even when you compare to the really intense chemotherapy there. The key for all of this is that in order to actually act early and take advantage of all this great biology, you got to know what your molecular subtype is, and so this is why one of the key things about this is molecular testing early. Don’t wait till second or third line of treatment to really start to act on the molecular subtype of your tumor. It’s really important for patients to understand their molecular subtype at diagnosis and act on it, if there’s ways to act on it, and so that’s really a challenge for us to make sure we’re communicating that to oncologists throughout the US and throughout the world. And I think increasingly we’re seeing that most, most providers now, are getting that molecular testing done and and making treatment decisions early. And just want to end by thanking the patients first and foremost. We are always trying to do better, and this is always bittersweet. When we see advances, because we see progress, but we also recognize how far we still have to go. And I just wanted to thank the the patients in the past who really participated wholeheartedly and in these, this clinical trials and the patients in the future that are still upcoming, and where we hope we’ll have better therapies to offer. So with that, thanks and happy to take some questions.

Manju George 33:57
Okay, thank you, Dr. Kopetz, that was an amazing presentation. As always, you take us through hard concepts, explaining them very simply. So thank you very much. So with questions, in COLONTOWN, people have posted some questions, and I had emailed you them, so maybe we can start with those, f you’re okay,

Dr. Kopetz 34:20
Sure, absolutely.

Manju George 34:22
Yeah. So the first question is, of all the patients on the different E plus C combinations, what’s the longest time in your experience someone has been on it? And the second part of it is, what do you think is the reason? Like, what have we learned?

Dr. Kopetz 34:39
Yeah, great question. I don’t know the answer yet about why. So we’ve had some patients that are now four years or so, on some of these combinations. The front line, chemo, plus a lot of times, what we’ll do is just continue the 5FU and encorafenib, cetuximab, and we’ve had patients on that two and a half years going on three so that really there is a subset of patients who can do really well with it. We don’t understand, we don’t know, if the tumor has some biology that’s called adaptive mutability, which is how the tumors change, in essence, they kind of turn themselves in and increase the rates of their secondary mutations, so that this is one of the ways the tumors can adapt. They start making more mutations. Each time they divide, they have more mutations. And the hope is they, imputing a lot of of intent to them, but the idea is that they, as they develop a lot more mutations they can find, stumble across other mechanisms of resistance. So there is some hint, maybe, that some of these really patients with really long duration don’t engage this adaptive mutability pathway, so their tumors don’t use this as a mechanism. But that’s I think, work that we still have to sort out.

Manju George 36:24
Okay, thank you. The next question is, what advice do you have for someone who was on FOLFOX plus E plus C and is now on maintenance 5FU plus E plus C. Is adding irinotecan to this at progression a good idea. If not, what else can they get?

Dr. Kopetz 36:44
Yeah, great question. So one point, not the question, is that when there’s this inclination, no one likes the pump, I get it, right? There is this inclination and maintenance to say, well, EC is working, what if we just stopped the pump as well as the oxaliplatin, right? And I really, I think that biology suggests that you need that 5FU, so I would say, try to maintain the 5FU now, the great question was, should we add more on to that? We just don’t know, to be frank, on this, I think, there is this sense that trying to put something into it before progression may not be the best approach, but we honestly just don’t have a good sense of this yet. I think we have tried it in some patients where you’ll start to see things kind of creep up. It’s not that full resistance is developed to 5FU and encorafenib Cetuximab, we either add the oxaliplatin in, or, if there’s neuropathy, add in the irinotecan, alternatively, so and that can work. The question is, is that better than than using irinitecan later, we just don’t know.

Manju George 38:07
For someone with a sustained response to E plus C and E plus C plus FOLFOX who is now progressing, what’s the best option next? Yeah, similar question.

Dr. Kopetz 38:19
Yeah. Great question. So there’s a few approaches there. There are studies to say, remember we talked about that these tumors are really dependent on this MAP kinase pathway. So there one approach is to say, well, let’s double down on this inhibition. And there is another protein downstream called ERK and so there’s a next generation ERK inhibitor. We tried ERK once, but that was really intermittent ERK inhibition, and that didn’t work. For the officianados, that had been tried once, but we think there maybe a better inhibitor. So there’s a study ongoing to double down on that pathway inhibition. The other is, we talked a little bit about the plasticity and the state changes. And so we have a study through the ETCTN or the NCI, federal government sponsored study, where we’re trying to use an epigenetic modifier. It’s called a BET inhibitor, but the idea is that it really inhibit some of these state changes. And so that’s a study that’s enrolling right now. And then there are studies to kind of ask questions about, well, what if you go and you do something else altogether, right? Like, if you haven’t gotten FOLFIRI, maybe you go and get FOLFIRI, you give it a break from EC. And what we see is that a lot of times, the tumors will rewire in order to evade the FOLFIRI. Sometimes they’ll shift back into a state that becomes EC sensitive. And so this idea to say, can you do what we call a re challenge, which is do something separate from MAP kinase targeting, and then come back and hit again with the MAP kinase. We see benefits with that with the EGFR inhibitors. This is a RAS RAF, wild type tumors that you can inhibit EGFR and then take a break and then come back and do EGFR alone. So that’s another strategy, but I think there still is a lot more that we can do.

Manju George 40:26
Okay, okay, thank you. So I think that brings us to the next question where people have asked, Can the BEACON and BREAKWATER regimens be reused? And then, if yes, like with EGFR inhibitor, we say, like, four to six months. Do you have any idea what’s the break that people would need?

Dr. Kopetz 40:48
Yeah, we don’t, to be frank, I think, we would typically check Ct DNA to make sure there’s no secondary mutations. All those are uncommon after BREAKWATER. But can be seen. So just make sure those have gone away. Because if you can still see a KRAS mutation present on CT DNA, then maybe it’s not long enough. You give it a little more time. But you’re right, we kind of think about, four month or so time away. It may be enough to have the tumor resensitize,

Manju George 41:25
okay, okay. And then the next question is, for people who miss the first line option of breakwater, what’s your advice on using this in second line or third line?

Dr. Kopetz 41:36
Yeah, great question. I think it does give us confidence that, bringing EC in combination with chemotherapy may be better than EC alone. So the the SWOG study that I showed the one with then looked at and second or third line looked at, in essence, BRAF, EGFR, with irinotecan, and that showed activity. And so I think if, for example, you got FOLFOX alone, I think there’s a rationale to say that you could do an EC, irinotecan, or EC FOLFIRI, in a second line setting. In that sense, all we have are these kind of cross trial comparisons to suggest, so in it, and we don’t have that, what we say level one, randomized data, but that tends to be my practice in those situations.

Manju George 42:35
Okay, thank you so much. The next question is, what’s the status of the E plus C Nivo trial. Do you have some updates?

Dr. Kopetz 42:44
Yes, so we’re going to be so that is a small kind of phase II study that is trying to build on the EC nivo single arm data there. The hope is there’s a subset of patients that may be deriving benefits from the nivo. So that one we should be able to present at ASCO this year. So we’ll have some of that that it was small the control arm was I think less than 30 patients there, but we’ll have that data.

Manju George 43:22
Okay, okay, thank you. So the next is, what is in line next, in terms of new regimens, now that breakwater is done, where’s the field heading? What’s cooking in your lab?

Dr. Kopetz 43:36
Yeah. So we’re really interested in the these epigenetic state, inhibition, I think the the idea to say that, that there’s a subset of cells that are kind of are adapting in some way to evade the those therapies. And if we can understand what those dynamic changes are, then we can potentially, kind of come in with inhibition and and look at different ways, the different vulnerabilities that may come up now. These can take the form of, potentially, thinking about ways to combine it initially, like, how do you extend duration when combination? Or can you understand these paths of resistance and then, kind of treat upon progression? So we’re trying to explore both ways.

Manju George 44:39
Okay, okay, thank you. So I’m done with those questions, and then here we have some Q and A questions. So those who are listening, if you have more questions, please add them in there. So the first question is, if there is a chemo for life patient, is there an argument to be made to do standard of care followed by E plus C or vice versa to prolong longevity rather than use the efficacy of both treatments together?

Dr. Kopetz 45:06
Yeah, no, that’s a, I mean, that is, that’s the angst, and I think that’s what surprises us about BREAKWATER. So the control arm, even if we limit to those patients who and the majority of patients, had access to BRAF, EGFR and second line in the control. So this was that study, in essence, the say standard of care chemo, followed by EC. How do patients live longer than when you put it all together? And the short answer is, it really matters, when you put them all together, that there’s a true synergy. It’s not kind of a one plus one equals two, but you’re getting much more. We think it’s because of and I know this looks like this question was like part way through my lecture, so hopefully I answered it with the kind of explanation of the how we’re trying to constrain the mechanisms of resistance. But I really think the data suggests that in this case, at least, it’s not about stringing it out, but really about bringing the best regimen together at the beginning.

Manju George 46:09
Okay, thank you. The next question is for can this drug regimen be used for patients without a BRAF mutation?

Dr. Kopetz 46:19
Yeah, great question that the short answer is, not, at the moment, there are, there been kind of different areas to explore in this space to kind of think through how you know what BRAF can do. One little bit of an aside is that there has been a recognition that the skin toxicity of the BRAF and EGFR combination is much less than you’d expect with EGFR alone. So the Cetuximab rash kind of acneform, kind of face trunk, but when we give the BRAF inhibitor, it’s actually less. They actually have much less, patients still have some skin rash, but it is substantially less so one of the areas has been like, Okay, well, could you use BRAF inhibitor to try to modulate some of that toxicity? But now, instead of taking it as encorafenib, as a pill trying to reduce that toxicity, there’s a company that’s actually made an essence of BRAF inhibitor skin cream. And so the idea is, could you just put a BRAF inhibitor skin cream on and treat the EGFR rash there? So that’s one kind of creative way where the BRAF inhibitors are being utilized there and I think in some extent, these drugs were engineered to be more potent against the mutated form of the protein. So that mutation is not there, it makes it a little harder to kind of utilize it, although I still think there’s some creative opportunities there, we just have not fully explored.

Manju George 48:07
okay, but in general, like to as a line of treatment for somebody without a BRAF mutation. You don’t generally recommend it?

Dr. Kopetz 48:16
yes, I should just be clear with that. No, we shouldn’t use it. There’s really no data about using encorafenib for anything but that BRAF V 600 E. Now the corollaries we also, I talked a little bit at the beginning about what about other BRAF mutations? And I think the data really has not.. we’ve tried for some of them. There’s different classes as we talk about them and characterize them, we tried these in different ones, and they have not provided benefits. So I know it’s tempting, because sometimes you say, Well, my report says a BRAF mutation, but they behave very differently than the V600E.

Manju George 48:51
Okay, thank you, for those who can only tolerate E plus C alone. Can it be continued once progression occurs, will it slow growth? Does it have to be stopped once progression occurs?

Dr. Kopetz 49:06
Yeah, so good question. We don’t fully understand all the dynamics of it. What we can say is that when we’re doing EC alone, that the mechanisms of resistance tend to be genomic, and kind of a get acquired pretty robustly. So we do think in those settings that kind of stopping the EC is beneficial, and that doesn’t necessarily result in any kind of progression or that continuing, it doesn’t result in more inhibition of the growth.

Manju George 49:46
Okay, so the next couple of questions, like in the BREAKWATER trial, do you have some data on whether people were able to get to surgery to resectability?

Dr. Kopetz 49:57
Right, yeah. So we do. There is some data suggesting, perhaps, that more patients may be able to get to surgery. We just, we need to kind of get that data little cleaner. It’s been a complex area, because there were several years because of the biology of BRAF and the outcomes, surgeons had just said, I’m not going to take a patient with a BRAF mutation to surgery. I just don’t think that it’s kind of beneficial in that regard. I think now the field has shifted a little bit, and people are more willing to do that, and we are seeing that, we are seeing anecdotally even, that some patients that go to the or for resection of their metastatic disease can have complete pathologic responses, which is just really extreme, great response to the treatment.

Manju George 50:53
Okay, okay. And then the next thing is do you have some breakdown of the people on BREAKWATER like, what kind of mets? I think you had the table, right? How many people had peritoneal Mets, and how did they respond?

Dr. Kopetz 51:09
Yeah, we don’t have breakdown by sites. It’s a great question. And so that we don’t have that data to say, you know that this group of patients perform better than the others. We do have in some of our waterfall plots, we can try to tease that out by eye, and then there are kind of we call forest plots, that have looked at that. The numbers are just small, but it looks like, in general, they’re performing better, but we don’t have, like, a breakout of response rate, for example, by peritoneal mets in particular.

Manju George 51:50
Okay, so next question is, what trial options are available for BRAF patients after BREAKWATER, you mentioned the BET inhibitor, right? Like, what else?

Dr. Kopetz 52:02
ERK and the rechallenge are the main ones that are out there right now being explored.

Manju George 52:08
Okay, the next question is, can you speak to any BRAF targeted therapies that are in the pipeline that are expected soon?

Dr. Kopetz 52:15
Yeah, so there’s work on on degraders. So degraders are one space. The idea is, instead of inhibiting it, can you grab the BRAF and just pull it and destroy it? So just kind of chew it up. Now, the cell remakes it, so you have to keep grabbing the BRAF and destroying it. So that’s kind of one of them. There’s been other areas to try to improve upon them. Kind of these next generation BRAF inhibitors that has some characteristics about how the different BRAF and CRAF and ARAF all kind of linked together. So these other family members, it’s B, because there’s an A, B and C, by the way, in case you want to know where the B came from. So there’s these other family members in the RAF family, how they interact. So there are some smart chemists out there trying to sort that out. We don’t necessarily know that they’re going to be better than what we have right now.

Manju George 53:19
Okay, okay. And then what about immunotherapy combinations? Is anything new being tested?

Dr. Kopetz 53:26
Yes, we have the PD-1. And that was done when we are looking back in the preclinical models. And again, always trying to learn everything we can and thinking about other strategies. The intriguing thing is that it really looks like that more than PD-1 is CTLA-4 that is the one that’s driving a lot of benefit, which is a kind of a common theme we’re seeing in in colorectal in general. That PD-1 is okay, but CTLA-4, really, is kind of what induces a bit of greater responses. So there is some intriguing data to say if we had the SWOG study that the encorafenib, cetux nivo study, would a CTLA-4 be better than that. So, these are things that we just have to try to prioritize the questions that we ask and try to understand if that’s going to be better. The other is vaccines. So there are some. There’s been a lot of push. Elicio, for example, the company that’s been generating K RAS vaccines for pancreatic cancer and then for colon and many others have been whispering in their ear to say, think about BRAF. Think about BRAF. So that’s on their radar. And so the hope is that maybe there could be some vaccine strategies to to kind of follow since we are talking about a single point mutation. So it’s kind of well aligned for that.

Manju George 55:06
OK. Next question is, are we close to a CAR-T, options for BRAF V600E?

Dr. Kopetz 55:15
Great question. We don’t see anything. I don’t know I say close, I mean, I think CAR- T’s have just been tough to try to find the cells that can get into the tumor there. So, so I would say we still have a little bit of way to go to even get CAR- T’s, in general, in solid tumors working. But we’re starting to see some, some progress. The difficulty is that you know when you have a single point mutation, that it’s getting expressed by a TCR, and these are really more like TCR TIL therapies where you’re trying to target the BRAF itself is that you’re looking for just a single mutation, and sometimes it’s hard for the immune system to tease out, like, really small differences in there. A lot of the CAR- T options are targeting completely separate proteins that are on the surface of the tumors. So the CAR-T’s are coming in and binding something on the surface that may not be related to V600E, so maybe that some of the CAR- T therapies being developed can be applied to BRAF population, but may not be BRAF specific.

Manju George 56:33
Okay, okay. And then in the BREAKWATER results, do you see a difference in patients who are younger with the BRAF mutation versus the older, right sided tumors. Is there a difference in outcomes?

Dr. Kopetz 56:47
Yeah, so that we have some data on early onset BRAF that says that they are deriving benefit from the therapy just as well as patients that are average age of onset. So I think the you know some subtle differences, but that there are some distinctions. Now, BRAF, in general, tends to be associated with MSI high in later onset BRAF, so I guess the caveat is that early onset less likely to have a BRAF associated with MSI high more likely to be MSS, but within the MSS BRAF, they tend to do the same as average age.

Manju George 57:36
Okay, okay. And then this is my other favorite question. So, with the pharmacogenomics testing, because we are combining E plus C with FOLFOX or FOLFIRI. Do you think that there can be more tailoring of the chemo part of the regimen so that people can stay on it longer? Are there any efforts to do that?

Dr. Kopetz 58:01
So, you know, we’re still, I would say, nascent in our understanding of pharmacogenomics. We know for irinotecan, UGT1A1, there’s some older data about the utility of that to kind of tailor things that really is more relevant for higher dose. irinotecan, kind of saturates a lot of the metabolism transporters, for the doses that we’re giving every two weeks, it’s kind of less relevant. So there has been some discussion like, Well, gosh, could you increase the dose of irinotecan in a patient that may have just the right pharmacogenomic subtype there, and I think that there hasn’t been a lot of work being done on kind of dose escalating the chemotherapy based on pharmacogenomics. But certainly a possibility. The problem is we don’t yet have pharmacogenomics for why the patients are responding to BRAF, for example, so we don’t have good answers there.

Manju George 59:03
Okay, okay, I think we are at time. And thank you so much. This was an incredibly informative talk, and I hope we can have you back when you have new trials and give a talk.

Dr. Kopetz 59:18
Yeah, always a delight.

Manju George 59:20
Okay, thank you. Thanks to everyone who was able to join. And as I said before, a recording of the video will be posted in COLONTOWN University in about two weeks. Thanks. Thank you, everyone. Thanks. Bye. Dr. Kopetz, bye.

DocTalk
2022
Dr. Newhook
ctDNA
Stage IV
Trials
Liver
Surgery

In this DocTalk recorded July 2022, Dr. Tim Newhook from MD Anderson discusses the utility of ctDNA testing in patients with resectable liver mets with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
00:45: Dr. Newhook tells us about his path to being a liver surgeon
06:00: What are biomarkers?
07:45: Hepatectomy for CRC liver mets — biomarkers needed
10:16: Adj and peri-op chemo therapy for resectable CRC liver mets
12:15: Rationale for preoperative therapy — what is occult disease?
14:40: Tumor mutational profiling
16:18: Role of RAS mutations, & other mutations?
18:20: What is ctDNA? Types of tests?
22:30: What is minimal residual disease?
25:20: CIRCULATE-Japan results
27:00: CtDNA and liver resection, pros & cons
31:40: CtDNA and liver resection: published studies
42:30: Who is at higher risk of MRD after liver resection?
44:22: Predictors of post-op ctDNA detection
46:10: Can ctDNA guide treatment decisions?
47:49: Multi-D management of resectable CRC liver mets
50:00: NCT05062317-Details
56:00: Conclusions
57:30: Q & A

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CtDNA testing for patients undergoing liver resection
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2022
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Categories
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CtDNA screening tests and the CIRCULATE-US trial

CtDNA screening tests and the CIRCULATE-US trial

DocTalk
2022
Dr. Lieu
ctDNA
Early-stage
Trials

In this DocTalk, Dr. Chris Lieu goes over CRC screening tests, including newer DNA-based tests that focus on CRC and multi-cancer early detection tests. In the second part of his talk, he covers the CIRCULATE-US trial for high-risk stage II and III colon cancer patients, which as of May 2022 is currently enrolling. This trial will address questions around the clinical utility of Minimal Residual Disease ctDNA testing. You can find more information about this trial in our Featured Clinical Trials Learning Center. Recorded with PALTOWN Scientific Director Dr. Manju George in May, 2022.

Table of contents

00:00: Introduction
01:19: Objectives
02:35: Colorectal Cancer 101
02:45: CRC Stats 101
03:04: Risk factors for CRC
04:14: Incidence of CRC
05:59: Take home point
06:45: CRC screening
07:03: ACS screening recommendations & tests
08:10: USPSTF screening guidelines
08:50: Take home point
09:38: Role of family history of polyps in screening
10:46: Predictors of CRC screening rates?
12:45: Tumor DNA-based screening approaches for CRC
14:01: Stool-based DNA testing
16:09: Intro to liquid biopsies
16:36: CtDNA: Properties & terms
17:40: CtDNA: Advantages
18:13: CtDNA: Disadvantages
19:27: Take home point
19:45: CEA vs ctDNA
20:44: CRC specific ctDNA testing
21:00: LUNAR-2 assay: The test, sensitivity & specificity
22:50 the 12,000 patient Guardant ECLIPSE trial
23:40: Multi-cancer Early Detection Tests, how do they work?
25:36: The 15,000 patient CCGA study
28:06: Take home point
29:01: Minimal Residual Disease (MRD) & ctDNA kinetics
31:15: Are findings of a ctDNA test actionable?
32:15: Adjuvant chemo for stage III colon cancer: Room for improvement
33:00: CIRCULATE-US
34:04: Is ctDNA in CRC ready for primetime?
34:55: Final thoughts
35:20: Q&A — Patient selection for Stage II Colon cancer
36:50: Q&A — Locations?
37:30: Q&A — How can patients talk to their care team about CIRCULATE US?
39:50: Q&A — How to enroll, info for patients interested.
40:50: Q&A — How to identify the different kinds of liquid biopsy or ctDNA tests? MRD vs others
42:13: Q&A — Trial for colon and rectal?
43:00: Q&A — What affects test sensitivity?
45:00 Q&A — Costs?

Manju George 0:00
Hello Everyone, Welcome to DocTalks. I’m Dr Manju George, the Scientific Director of PALTOWN, the nonprofit that supports COLONTOWN. I organize DocTalks, which are Zoom video talks from expert clinicians from the field on topics that are relevant to colorectal cancer patients and caregivers. Today, we have Dr. Christopher Lieu with us. He’s the Associate Director of Clinical Research and the Co- Director of Gastrointestinal Medical Oncology at the Colorado Cancer Center. He’s also the Vice Chair of the NCI Colon Task Force. Very excited to have you with us, Dr. Lieu, and he’s going to tell us about CtDNA tests for cancer screening and about the CIRCULATE-US trial. Welcome.

Dr. Christopher Lieu 0:43
Thanks so much, Dr. George, and thank you so much for the opportunity to talk to you all today about circulating tumor DNA and an upcoming trial, or newly opened trial called CIRCULATE-US, where we’re trying to utilize this new technology to change the way we treat earlier stage colorectal cancer. So thanks for taking the time. These are my disclosures: I do want to mention that there is a contracting agreement between Natera and my institution, University of Colorado, and in regards to Natera, just mainly because they’re one of the companies that produce CtDNA assays.

Dr. Christopher Lieu 1:17
All right, so what are we going to talk about over the next 30 minutes? We’re going to go back. I know that you have already had great talks from Dr. Cohen and Dr. Kopetz in regards to circulating tumor DNA, and we’re going to build on that, but we’re going to take a little bit of a step back. I’m sure you’ve talked about circulating tumor DNA, or heard of it in terms of earlier stage, or even the utilization of this type of technology in later stage colorectal cancer. But what about screening and primary prevention of colorectal cancer? What we mean by that is essentially anybody who hasn’t ever been diagnosed with colorectal cancer, we want to prevent those cases. So where can blood based tests really make a difference? We’re going to talk about screening just in general initially, and we’re going to talk about screening rates within the United States, but we’re going to start then to talk about where CtDNA may be appropriate in primary prevention of any cancer. Of course, this includes colorectal cancer, and of course we want to follow up with a discussion about what CIRCULATE-US is in regards to the utilization of CtDNA for stage III colon cancer.

Dr. Christopher Lieu 2:24
So this is going to be a big background that everybody already knows about colorectal cancer, because this group that’s listening to this talk is, – you guys are really the experts, but it is good to go back to the basics and talk about, what is the landscape of the epidemiology to risk factors and screening for colorectal cancer. We know that this is the third most common cancer diagnosed in the United States, and the estimates for the number of colorectal cancer cases in 2022 are over 100,000 new cases of colon cancer and over 40,000 new cases of rectal cancers. So this is a tremendously big problem, and certainly something that this group knows a lot about. And of course, the risk factors for colorectal cancer include risk factors for a lot of cancers, including being overweight or obese, having physical inactivity. A little bit different than a lot of other cancers is this idea that a diet high in red meats, processed meats, or cooking meats at very high temperatures, is a risk factor for colorectal cancer. And of course, these are some foods that a lot of people like a lot. So if you eat barbecue, it is a risk factor for colorectal cancer. This isn’t an announcement to say, “don’t eat barbecue”. But of course, it does mean that we certainly want to limit how many processed meats, or red meats or high cooked or high temperature meats we eat on a daily basis.

Dr. Christopher Lieu 3:41
Smoking and alcohol use are significant risk factors for a lot of different cancers, but of course, we always worry about genetic risk and hereditary genes impacting our ability to develop a colorectal cancer. But this still is a vast minority of cases of colorectal cancer that have a genetic component to it. Familial Adenomatous Polyposis is only 1% of the population. Lynch Syndrome, which is the most common inherited cancer risk profile for colorectal cancer, is only 2 to 4%. So these are some really interesting charts in regards to the incidence of colorectal cancer by age. And so when you look at the population that’s 55 and older, you can see these dramatic decreases in the incidence of colorectal cancer. And this really speaks to the power of primary prevention. This idea that if you screen for colorectal cancer, if you get a colonoscopy and remove polyps, you can really reduce the incidence of colorectal cancer. That’s the big take home message. Of course, this group is also very familiar with the fact of the incidence in our younger population. So what you’re looking at here are graphs from 20 to 49 and you can see this inflection point in the 1980s and the 1990s where the rates of young onset colorectal cancer really started to increase, and then it increased year over year. Many of the people in this group and listening, and certainly the physicians and providers, would tell you that seeing young patients with colorectal cancer is really obviously still devastating, but it’s becoming, unfortunately, more common.

Dr. Christopher Lieu 5:13
Another way to look at this data is to look at colorectal cancer incidence rates by birth cohort, and you can again, see this inflection point that those born 1960 to 65 and then onwards. You can see this incidence increasing. Now I do have to tell you that early onset colorectal cancer is, of course, still rare, but if it increases by 2 or 3% every single year, then you can tell that even though it’s still a rare event, it’s becoming, unfortunately, more frequent. The United States is not the only country documenting an increase in early onset colorectal cancer, and those countries highlighted in red are showing similar trends. So this is a worldwide phenomenon, and not solely restricted to the United States. So the first take home point that everybody here already knows is that the incidence of colorectal cancer, particularly rectal cancer in young patients, is increasing. And this figure that you see here shows the duration of bleeding of having seen blood in the toilet before diagnosis, and this is stratified by the stage of diagnosis. When you look at older adults, the onset of bleeding to diagnosis of cancer is usually about 25 to 28 days. Here, if you look at some of the patients that were diagnosed with stage IV disease, on average, they were waiting over a year between the time that they had their initial symptoms and the time that they were actually diagnosed. And the longer that time takes, the more likely it is that you’re going to have advanced colorectal cancer, as opposed to an early stage colorectal cancer. So how do we prevent colorectal cancer? We don’t always talk a lot about screening as oncologists, because we’re usually taking care of patients after they’ve been diagnosed. But the problem with this is that there’s so many guidelines out there that it can be very confusing in terms of what patients should actually do. But of course, the American Cancer Society several years ago actually was very forward thinking and they actually decreased their age to start colorectal cancer screening from the age of 50 to 45 and I showed you the data as to why they wanted to change that. For people ages 76 to 85 the decision to be screened should be based on a lot of different factors, including how healthy that individual is. And the recommendation is that people over 85 should no longer get colorectal cancer screening.

Dr. Christopher Lieu 7:29
In terms of what tests that people offer, there’s stool-based tests and there’s visual tests. The stool-based tests include looking for blood in the stool, and that’s called a FIT Test or Fecal Immunochemical Test. We have this general fecal occult blood test, and there’s even a stool DNA test, which we’ll talk about. But of course, the gold standard is colonoscopy, because not only can you visually look at the colon, you can also remove polyps that may eventually turn into a cancer. There’s also CT imaging that’s available, and a flexible sigmoidoscopy looks at the first third of the colon, but cannot reach the last two thirds of the colon. The United States Preventative Services Task Force also has guidelines. This is our most conservative guideline group because their expectation for the level of evidence is quite high. So they really, really look at the data and say, well, the data doesn’t support certain screening, then they don’t recommend it. But if it does, then they do recommend it. Their Grade A recommendation is still for adults age 50 to 75, but the big update here in 2021 was a Grade B recommendation for 45 to 49 which means that these patients likely really should be screened. And, the more patients that get screened, the more we can prevent cancer. So your second take-home point: everybody should start screening at age 45 or 10 years before the youngest case in the immediate family. So if a first degree family member was diagnosed at the age of 40, then you would start screening at the age of 30. For patients 76 to 85: just consider the patient’s health. Then a colonoscopy is the gold standard, because it’s preventative and potentially treatable as well.

Dr. Christopher Lieu 9:10
Just a quick note from Dr. George that if you guys have any questions as the presentation comes in, feel free to put it into the chat. In all honesty, feel free to just unmute and ask the question even as I’m speaking. I’d love for this to be as interactive as possible. All right.

Manju George 9:26
Dr Lieu, then I have a question.

Dr. Christopher Lieu 9:28
Sure

Manju George 9:28
So my question is, what about polyps in the family, and how does that affect when you have to screen?

Dr. Christopher Lieu 9:36
So it really depends on the type of polyp. It’s such a great question, because I think that this really gets overlooked. If you have your typical tubular adenoma, and you get those things clipped off, and then the risk of having colorectal cancer, from a familial standpoint, is quite low. There are some times that patients have really, really advanced polyps, basically these polyps that have really high grade dysplasia and you can tell that in the next one or two years, you can tell that that patient is actually going to develop a colorectal cancer. And that’s why it’s actually so critically important to know that if you have a very advanced polyp that has significant malignant potential, we should treat those patients as if they already had a colon cancer. So, kind of complex. It’s certainly one of those things that when you get a colonoscopy, you get a polyp removed, it is good to ask, “Hey, was it a really benign polyp, or was this a really scary looking polyp?” And if it’s a scary looking polyp, then you go and tell your entire family. Great, great, great question!

Manju George 10:32
Okay, thank you.

Dr. Christopher Lieu 10:33
Absolutely! When you look at colorectal cancer screening across the country, there are disparities here. And actually, one of the questions I really wanted to ask the group was, well, what is the biggest predictor of getting colorectal cancer screening? You’ll find the answer as we go through the next several slides. But is it race and ethnicity? Is it income? Is it even geographic distribution? You can tell that your rate of colorectal cancer screening actually differs by by state. So if you’re living in Texas, for instance, then the rates are 62% which is obviously much lower than we want it to be. If you look into northeast: Rhode Island, Massachusetts, New Hampshire, Maine, they have 75 to 76% screening rates. And the goal here is, obviously would be 100% but in all honesty, even having 80% would be really, really, tremendously impactful, and you can see that there’s a difference across the entire country. Well, what about sex? So if you’re male or female, does that make a difference? In here, there’s a little bit of a difference between females and males, but for the most part, it’s relatively the same, and has stayed that way over time. What about age? It does make sense that as you get older, there’s increased use of screening. Maybe there are some other health factors, you’re seeing your doctor more frequently. But it is interesting that as you go from 50 to 64 and then from 65 to 70, there is a pretty significant jump in terms of who’s getting screened. What about race and ethnicity? It’s interesting because I thought that the disparity gap here would be wider. It’s not quite as bad as I thought there would be, but there is a disparity gap, and so even when you look at our Native American population and our Asian population, interestingly, those are some of lower rates of screening compared to some of the other groups that you’re seeing here. But for the most part, there isn’t a huge difference. But what I’ll tell you seems to be the biggest discrepancy, or disparity between colorectal cancer screening and groups is actually your insurance status. And I think that that’s actually one of the big take home points, is that if you’re insured, you’re going to get screened, and if you’re uninsured or underinsured, only half of those patients are actually getting screened. So it does tell you that a lot of these things, you can actually have an impact on. But it is interesting data.

Dr. Christopher Lieu 12:43
All right. Well, what about tumor DNA-based screening approaches for colorectal cancer? We’re here to talk about circulating tumor DNA, and we’re going to talk about — I see the question from Annie about right versus left sided primaries and screening methods. So that’s such a great, great question, and I’m actually going to answer that a little bit later over the course of the talk, because for these tumor DNA-based screening tests, you want to make sure that you can detect cancer on both sides. To go back to visual screening methods like flexible sigmoidoscopy and colonoscopy, if you have a left sided primary you should be able to see it on colonoscopy and flexible sigmoidoscopy, but because flex sigmoidoscopy only really looks at 1/3 of the colon, flex sigmoidoscopy is definitely going to miss the other two thirds, particularly the right side of primaries, because you’re just not looking. But of course, with even with colonoscopy, sometimes you can miss the right side of primaries because either the prep is not very good or, you know, because it’s just harder to get there, and sometimes you can’t even get the scope all the way that far. So the right side is a little bit harder in terms of detecting cancer even with colonoscopy, but colonoscopy is still the best bet to find it.

Dr. Christopher Lieu 13:55
All right, I do want to talk about the first ever DNA test approved for use for screening, and that is a stool-based DNA test. So we talk about circulating tumor DNA, but here we’re actually talking about stool DNA. And what you’re looking at here are the performance metrics between the stool DNA test and fecal immunochemical test, which is basically looking for blood in the stool. You can see across stages the multitarget DNA test does seem better for early stage stage I and II cancer, and then performs about as well for stage III and IV. That question about left versus right is shown on the right side of this graph, and so proximal cancer would be the right side and distal cancer will be on the left side, and then you can kind of see that this test does perform better than than the FIT test. What’s interesting about this is that you can actually even detect pre-cancerous lesions with the stool DNA test. Obviously it’s not as effective in patients with polyps versus cancer. But you can tell that there’s a certain amount of pre-cancerous lesions that the stool DNA test is actually picking up. All right, and that gets us to circulating tumor DNA.

Manju George 15:11
Dr. Lieu? I have a question. So basically, they’re looking for cells from the polyps that are shed into the stool. Is that what they’re looking at?

Dr. Christopher Lieu 15:20
So they’re looking at DNA shed from the polyps into the stool. You imagine that over the course of time, these polyps have some genetic alterations. We know that there’s some early events even like KRAS and RAS and BRAF mutations are kind of earlier events in the development of cancer. But you can actually detect some altered DNA, even in polyps, and you certainly can detect it when there’s a full blown colorectal cancer. So it is interesting that in some of the altered DNA, you can see in some of these higher grade polyps, particularly there’s high grade dysplasia. They are shedding altered DNA that can be picked up by these tests, which is kind of cool, right?

Manju George 16:03
Okay, thank you.

Dr. Christopher Lieu 16:04
Absolutely. I know that you’ve had lectures from Dr. Cohen and Dr. Kopetz in regards to what gets leaked into the bloodstream. When you have a tumor that’s in place, sometimes tumors can shed actual tumor cells that you can pick up and even sequence. They release these things called exosomes into the bloodstream, but when tumors undergo cell lysis, or cell death, they do shed cell-free DNA into the bloodstream. Now the way I always describe this to my patients is that if you have somebody who’s pregnant and you draw their blood, obviously a majority of what you see in the mom’s blood is their own cell-free DNA. These are just cells, normal cells that are just turning over, and there’s release ofDNA into the bloodstream, which gets metabolized by your body fairly quickly. And so that represents a majority of the DNA that floats around in the bloodstream. But a portion of that would be fetal DNA. So you can actually sequence out the baby’s DNA, the DNA from the baby that’s being circulating around the mom, that also gets metabolized very, very quickly. Well, the same thing happens with tumors. So in our patients that have a tumor, a majority of the circulating tumor cell-free DNA in the body is that person’s normal DNA, but there’s a fraction of that that can be circulating tumor DNA, or CtDNA, which can then be sequenced and detected. And that’s really the basis of a lot of the technology that we’re looking at.

Dr. Christopher Lieu 17:39
And certainly, circulating DNA has its advantages. It’s stable – you can actually do mutational testing on it. There are established biomarkers, and it’s a short half life. Why is that important? It’s because a lot of times we get information from tissue, and that just represents one point in time. What’s circulating in the body is happening right at that moment.It gives you this real-time look of what’s happening in the body at that moment. And there’s the potential to do even further genomic characterization from the fragments of DNA that are released into the bloodstream. But of course, the disadvantages are the ones that are critically important, especially when we’re talking about screening for cancer. So not all tumors appear to shed detectable CtDNA. We worry, if a tumor is too small and is not releasing at least enough detectable circulating tumor DNA to capture in the blood, then you may, at that point, not be able to detect CtDNA, even though a patient does actually have cancer. The methodologies for analysis are really complex and expensive andthis idea that you have to filter out a lot of noise. And so part of this is that that noise can even be that as patients age, they develop these mutations that exist usually in their white cells, in their bloodstream, that are not harmful at all and are not precursors for cancer. They’re just these altered mutations that are benign. But we call this clonal hematopoiesis of indeterminate potential, or we call it CHIP for short. And that is that sometimes, as we age, we develop these mutations that exist in some of our cells that are completely benign and have nothing to do with cancer. Well, what if we detect those mutations and say, “Oh, you have cancer”. That would be obviously a real problem. So your take home point, only a fraction of cell-free DNA is circulating tumor DNA, but CtDNA may provide a real time look at what is happening in the body.

Dr. Christopher Lieu 19:33
And so there’s a couple of points as we kind of go into this idea of utilizing a test to detect cancer for the first time. One of the things that people ask is, “Well, why don’t we just use CEA?”. CEA is a blood test, and a protein that we look for in patients with colorectal cancer. And sometimes we can trend CEA to determine if a cancer is getting better or getting worse. But a CtDNA is better than CEA. What you’re looking at here is CtDNA versus CEA positivity in different stages of cancer. What I want to show you is that, particularly in earlier stage colorectal cancer, CtDNA definitely outperforms CEA. You can see that with CtDNA being on the left and CEA being on the right. You can see that CEA isnegative in a lot of patients that actually have cancer, whereas when you look at CtDNA for stage II and stage III colorectal cancer in particular, it’s almost never negative. Which means that when it’s positive, there’s definitely cancer there.

Dr. Christopher Lieu 20:41
I want to talk about two tests that are currently under investigation. One is colorectal cancer specific, and one is just looking for cancer, period. There are companies that are certainly developing both of these right now. So this is a multimodal circulating tumor DNA test looking at the primary detection of colorectal cancer. This is called a LUNAR-2 assay. Essentially what both of these tests are doing is they are looking at something called DNA methylation. And aberrant methylation signals in tumor, versus benign tissues, are different. Therefore, if you see this methylated DNA, you might be able to detect cancer earlier. And this is the test case: There were 434 cases, 271 controls, and this is the distribution by age in the controls and in colorectal cancer. Really what I want to show you is essentially this slide. What you’re seeing here is the overall sensitivity for this assay for patients with colorectal cancer or without colorectal cancer. You can tell that the overall sensitivity is unbelievably high: 91%. In the age cohort 45 to 84 which is traditionally the group that we’re looking at to detect colorectal cancer, it’s 90%. You’re seeing this high sensitivity across stages: stage I and II, stage III. Specificity is this idea that if you detect cancer and if the test is positive and you do have cancer, what is the accuracy there? And it’s 94%. So the key here is that again, across stages, it’s a really, really highly sensitive test. That’s what you want in any good screening test. Then this question of left sided versus right sided, it’s actually detecting cancers pretty well, maybe even slightly better on the right side versus the left side. And then transverse, there are not as many cases. There are only 17 cases of colorectal cancer, but it was 82% sensitive in that case. So a really, really interesting test, and I think this is really interesting early data. What they did was, – the company, Guardant – has a trial where they enrolled 12,750 patients to detect colorectal cancer, and we’re hoping to get data in the middle of this year. We’ll find out what the performance of this LUNAR-2 blood test is in the individuals that would normally be screened for colorectal cancer, and we’re going to see how good of a test this is. But can you imagine, drawing a blood test to screen for colorectal cancer, as opposed to potentially either putting in for a stool sample or undergoing a flexible sigmoidoscopy or a full on colonoscopy. So, very, very interesting, and we’ll see what the data is as they as they come out later this year.

Dr. Christopher Lieu 23:39
All right. So we talked about colorectal cancer. I just want to briefly touch on a multi-cancer early detection test, and this idea that can you utilize the same technology that we were just talking about, but look for all cancers. So imagine a blood test to be able to detect any cancer, and obviously, hopefully at an early stage. We had talked a little bit about this before, but this focus on DNA methylation. The idea is to have a low false positive rate, and we call that “high specificity”. And this idea that if you have a lot of coverage over these methylated regions, not only would you be able to detect cancer, but if different cancer sites have a unique methylation pattern, then you could at least tell somebody, “Well, you may have cancer. We have no idea where it’s coming from”. You might be able to point people towards, “Well, this fingerprint is more suggestive of lung cancer or pancreas cancer or colorectal cancer”. And that’s what this really complex figure basically shows you, is that you can draw somebody’s blood, look at the DNA methylation, and then what they’re really trying to figure out is that, is there a tissue specific methylation fingerprint where a specific methylation pattern might tell somebody, well, we really need to look for lung cancer or liver cancer or colorectal cancer. Because, you can imagine as a primary care provider, if you just get this test back that says, “Oh, we think you have cancer”. That’s not only incredibly anxiety inducing from the patient’s standpoint, it’s also incredibly anxiety inducing from the physician’s standpoint, because then, what do you do? Do you do a colonoscopy? Do you do a full body CT scan? So you can see some risk involved with these tests as well.

Dr. Christopher Lieu 25:29
This is a 15,000 participant study at 142 sites, and essentially what they had was a discovery group and a validation group. Essentially they wanted to see if the test could potentially work in a smaller group of patients, and then look at a bigger group of patients. These patients, some of them had cancer, some of them didn’t have cancer. What this test shows you is two take-home messages. Number one, the sensitivity is not great. It’s 51.5% which means in patients that had cancer, sometimes the test was positive, sometimes the test was negative. The other take home point is that it was a highly specific test, which means that in patients that didn’t have cancer, if the test was negative, they really didn’t have cancer. And there are very, very few false positives, in other words, where the test was positive, but they did not have cancer. So it meant that basically, the test was negative. There’s an incredibly high chance that they didn’t have cancer, and that’s obviously a good thing, but the sensitivity rates across diseases, range very, very differently. So you can clearly tell on the left side of this graph that this test is not a great test for prostate cancer. 11% sensitivity. That is definitely not ready for prime time.

Dr. Christopher Lieu 26:48
Well, what about colorectal cancer? Here the sensitivity is quite good, 82%. And then if you go into liver cancer or even carcinoma of unknown primary, there the sensitivity is 93 to 94% so it’s a big spread. So I would say the data is very promising towards the right side of this graph. Very not promising on the left side of this graph. And I think the main question that you have to ask is, well, will the technology get better? Can we get all of these sensitivity rates really, really high? So again, this is colorectal cancer sensitivity looking at stage I through stage IV. It’s clear that as you go higher in stage that the ability of this test to detect cancer goes up significantly. It always seems like these tests have a harder time with stage I, but the moment you get to stage II and III and IV, it gets actually quite good. I wanted to show you that detection of other GI malignancies. There’s really one take home message, and that is, for all these GI malignancies, it doesn’t do great for stage I, but as you get further into the stages, it does quite a good job of being able to pick up the detection of cancer. But again, the main question that you want to answer is, can this test save lives? We’ll say, additional studies are needed. I think you’re going to see this technology really change the way healthcare is delivered in the future. Right now the question is, is it ready for prime time? And I would say we don’t really know the answer to that quite yet. All right.

Manju George 28:19
Dr. Lieu, I had a question. So, Exact Sciences had a large trial. Is that more like a multi-cancer, or is it more like the Guardant Health?

Dr. Christopher Lieu 28:29
Yeah, so Colvera is really focused predominantly on CRC, although I know that they have data on other cancers as well. It’s interesting, because a lot of these tests that I’m showing you are casting this really, really wide net. Colvera is very interesting in the sense that they’re really looking at two genes. But they found that those two genes really do a great job of predicting for colorectal cancer. So, a little bit different, but dissimilar technology.

Manju George 28:54
Okay, thank you.

Dr. Christopher Lieu 28:55
Absolutely. I’ll just wrap up on this with the last five minutes, because, well, we talked about primary prevention of colorectal cancer. We talked about screening. Well, what about in patients that do have colorectal cancer? What happens to CtDNA in those patients, either postoperatively after surgery, but even during adjuvant chemotherapy? What happens to CtDNA? Does it go up? Does it go down? Does it become detectable? Does it become undetectable? We call that CtDNA kinetics. I just want to show you data from the Japanese group. This is their GALAXY study where they’re utilizing CtDNA, and it’s really interesting data. What this shows you is that postoperatively all the way to 12 weeks, if you’re negative and stay negative, you’re going to do great. That’s the black line. And what you’re looking at here is disease-free survival. Basically, nobody’s recurring, right? So that’s good. Interestingly, if you’re CtDNA positive post operatively, and then you turn negative, that’s almost as good as just being negative from the get-go. So that’s interesting. If you’re CtDNA positive postoperatively, you’re freaking out. – I’m worried, you’re worried. But if you turn negative, then your prognosis is quite good. If you’re negative and then turn positive, then there’s a pretty high rate of recurrence. And if you’re positive and stay positive, these are the patients that here, you’re looking at almost 70 to 80% of those patients recurring even within one year’s time.

Dr. Christopher Lieu 30:25
And I do want to show you that adjuvant chemotherapy can clear CtDNA. Interestingly, there is a 10% clearance rate by doing nothing and it makes you wonder what’s going on in those patients. Are those patients just clearing it due to their immune system? But interestingly, there is a significant rate of patients that even if they’re CtDNA positive, they receive adjuvant chemotherapy, they can clear it. We also know that if in patients that are CtDNA positive and they receive adjuvant chemotherapy, that they do better. And so that’s what you’re seeing in stage II, stage III and stage IV. That if there’s CtDNA postoperatively, and they receive chemotherapy, that their recurrence rates are significantly less. So the real question that everybody in this group wants to answer is, are the findings of this test, which is very, very cool, but is it actionable? Because that’s how we’re going to save lives.

Dr. Christopher Lieu 31:20
So what do we know so far? If CtDNA is positive, the recurrence risk is extremely high. That makes sense. If we detect tumor DNA in the bloodstream, it means cancer is there, and it means that at some point it’s going to show up on a CT scan. If CtDNA can be cleared, in other words, with adjuvant therapy, then disease-free survival is significantly improved, and we know that adjuvant chemotherapy can clear CtDNA. And we also know that if CtDNA is not detected, and it’s not detected over multiple time points, we also know that those patients are going to do incredibly well. This is the overall problem with stage III colorectal cancer, and that is that we’re treating 10 patients with with stage III colorectal cancer to save 2 to 3. I’m going to go through that. Why is that? In 10 patients that have stage III colorectal cancer, 5 of them are essentially cured with surgery. They never needed chemotherapy. In other words, they’re getting treatment even though they never needed treatment because they were cured. There are 2 or 3 that get treated with adjuvant chemotherapy who relapse anyway, which means that we didn’t help them with adjuvant chemotherapy. They were going to have recurrence whether we gave them chemotherapy or not. So we almost gave them chemotherapy needlessly. So essentially, we treat 10 patients to save 2 to 3, which means that we basically treat 7 to 8 patients needlessly with chemotherapy, either because they’re going to be cured or because they’re going to recur regardless.

Dr. Christopher Lieu 32:45
The idea is, maybe CT DNA can tell us who we don’t need to treat, and maybe we can tell with CtDNA who needs to be treated even more aggressively. I want to highlight this study, because this study is now open to enrollment and it’s going to be open up across the entirety of the United States. Essentially the way this trial is designed is that if you have stage III colon cancer and you have no CtDNA detected post operatively, you are then randomized to receive standard of care chemotherapy, which is what we normally do, or surveillance without chemotherapy, with serial CtDNA checks. If you’re negative CtDNA and stay negative, you never get chemotherapy. But if you’re negative, and then turn positive, at that point, you get chemotherapy. You get randomized to either receive standard of care chemotherapy or an escalation of chemotherapy, where we try a three-drug regimen versus a two-drug regimen. We do this because we’re worried that our patients have a poor prognosis when CtDNA is detected. Postoperatively, if you are CtDNA detected from the get-go, you undergo that randomization: either the standard of care chemo, or this triplet combination which represents an escalation of chemotherapy.

Dr. Christopher Lieu 34:00
And so the real question is, is CtDNA ready for prime time? I would say, in terms of identifying alterations in the bloodstream, that it is ready for prime time. But what we’re really trying to answer is, this bottom one. In terms of the detection of minimal residual disease, this presence of cancer, even though we can’t see it on a CT scan. The answer is possibly. Is it ready for prime time? It’s clear that CtDNA can detect cancer, but are the results actionable? And so the idea being, we know that this is an incredibly prognostic tool. It can tell us whether somebody’s going to recur or not, and we know that getting serial testing helps, but will it alter clinical practice? What happens if you get a positive result? Do you increase surveillance? We don’t know the answer to that. Will these tests save lives? So in other words, will a clinical trial like CIRCULATE-US end up showing good data in terms of well, can we use this test to determine who should and shouldn’t get chemotherapy? Can we use this test to determine who needs more chemotherapy? I’m hopeful that we’ll get the answer to that as time goes on.

Dr. Christopher Lieu 35:11
So I know that’s a lot of information in a short amount of time, but happy to – , I know Manju, you had to step aside for a little bit, but wanted to see if you guys had any questions? I see Julie has a question, can you talk a little bit little more about patient selection in CIRCULATE for stage II? Yep. So, I was trying to keep it a little bit simpler, but Julie’s asking a really, really great question, and that is the trial enrolls lower risk stage III, so if you don’t have a ton of lymph nodes involved. But there is this thing called high risk stage III, if the tumor is aggressively moving into other organs, or if a lot of lymph nodes are involved. There is also high risk stage II, where there are features of the tumor that are really concerning for the clinicians, and that’s usually related to how angry it looks under a microscope, or that tumor is actually invading into other organs. You can actually enroll into CIRCULATE if you get outside testing and that test is positive for CtDNA. You can actually enroll into the CtDNA-positive arm. We just want to give those patients the ability to have a chance of getting more aggressive chemotherapy. So if you’re high risk stage II colon cancer, or high risk stage III colon cancer, you don’t traditionally enroll into CIRCULATE, but if you have outside testing that you got as standard of care and you’re positive, then you can enroll. Annie’s asking, “The trial is only in this location in NRG?” Yes. So essentially my hope is that it’ll be open at more than 400 sites across the country. This is a collaborative effort between all the cooperative groups, which includes NRG, so this trial should, honestly, it should really be open within, my hope is 30 miles from every patient, but the reality of it is that it should be open in every state and in most, if not all, major cities.

Julie Clauer 37:13
So in terms of, you know, we have a lot of patients that come into COLONTOWN who would qualify for CIRCULATE-US, but they’re not necessarily looking at clinical trials at that point, because, they’re not high stage. They’re just recently diagnosed. Can you talk about what that conversation could be in terms of, how do they talk to their doctor, about, “Hey, I heard about this trial. What is it? Is it interesting?” Because the timing is, they might be post-surgery, but pre-adjuvant chemo, and so that’s good timing. So talk a little bit more about that, just because it seems like a quick turnaround has to happen, but it’s not necessarily people that are poised to have that quick conversation.

Dr. Christopher Lieu 37:58
So yeah, I think the timing of this is the most challenging part of the trial, and that is this idea that, if most people get seen by medical oncologists, usually a decent amount of weeks after their surgery. Capturing these patients early and getting CtDNA testing so it can inform which arm of this trial you go on is critically important. And so, I think where COLONTOWN and PALTOWN have been amazing is number one, it’s a resource. People are told they have colon cancer, and obviously, understandably, they’re freaking out. So I think the information that’s provided on COLONTOWN University is absolutely incredible. And then honestly, the earlier you can have the conversation, the better. So even before surgery, asking about it, “Is it available? Can I talk to somebody about it?” would be huge, because then everybody knows as soon as surgery is done, that they’re going to start thinking about the study, and they’ll know whether or not it’s even available at their site, or if there’s a practice closer, or within close proximity that they can enroll in. And so I think, honestly, COLONTOWN will find patients way before medical oncologists will. I think just getting the word out would be really cool, because I think, – but it’s a tough conversation, because people are just now getting introduced to this technology, and then they’re talking about clinical trials, and it’s a complex clinical trial. So having that information available and even people to talk to, I think, makes all the difference in the world for our patients but, can also help with a clinical trial accrual.

Julie Clauer 39:41
So let’s say it is available at their location. Would they connect then to the PI, or would they have CtDNA done before?

Dr. Christopher Lieu 39:54
Yeah, so I honestly would connect either through ClinicalTrials.gov, which would show the sites. Honestly, the easiest way to find clinical trials, and this is just in general, is to really ask the doctors in that area to see if, –because if they don’t have CIRCULATE open, I’m sure that they’ll actually know who does. But then also contacting the PI even like Dr. Dasari or myself, is always, I think, easy, because we’ll happily direct people to the right place.

Julie Clauer 40:26
Great, thanks.

Dr. Christopher Lieu 40:29
And then, can either a Signatera or Reveal test qualify for high risk stage II? It’ll need to be a Signatera test.

Julie Clauer 40:37
I have an unrelated question, but it drives me nuts. So now we have a lot of awesome tools that are using blood tests, like, you can get your biomarkers from a liquid biopsy, you have CtDNA to detect whether you have cancer, whether you have MRD, but it gets really confusing in terms of what to call these tests if you don’t call them by the brand name. So it’s like trying to explain to a patient like, “Oh, no that’s a liquid biopsy, but it’s a different liquid biopsy than the one…”. So is there an easy terminology of what to call these different tests? Because you say a CtDNA test, and some doctors still don’t necessarily differentiate between the different tests. So anything that can help on that end, because it gets super confusing.

Dr. Christopher Lieu 41:25
Absolutely, I think we’re all learning this new terminology, right? And I would say whenever you’re talking about: ‘is there cancer or not’, we should just call those MRD tests or minimal residual disease tests, that’s probably the easiest way. And if we’re looking for mutations in patients with stage IV cancer, we’re just basically looking for – we wouldn’t call those MRD tests or minimal residual disease tests, we would call them, I think maybe the easiest way to describe it is almost like a liquid biopsy to look for mutations. That’s essentially what you’re doing. And so I think the easiest way to kind of think about is, hey, if it’s trying to determine whether cancer is present or not, MRD is probably the way to go. And then the question, is this for rectal? Well, so CIRCULATE-US is only for colon cancer. Rectal cancer is a little bit tough, because a lot of times patients are getting a lot of therapy even before surgery. In fact, they’re getting almost all their adjuvant therapy before surgery. So this study is only for colon cancer, but these assays can be used for rectal cancer as well as colon cancer. And then Annie mentioned that for those over 70 with a high immunoscore. Yeah. The question is, is it only CtDNA? Could it be a combination of immunoscore and CtDNA? And I would love to see those collaborations in the future, because it may not just be “it’s one test to rule them all”. Maybe it’s a combination of different factors to help us make these determinations. But we’re starting with CtDNA, and then we’ll have to look how immunoscore may be added to this to help our decision making.

Julie Clauer 43:03
In terms of sensitivity. So we know this sensitivity is really high for for MRD tests, but there seems to be some things that tend to be more questionable, right? So lung mets, or maybe, the location of mets, if you’re stage IV. And I know we’re not necessarily talking about it in terms of stage IV, but a lot of patients are doing it or age or things like that. So is there any kind of good understanding of where, within colorectal cancer, how the sensitivity changes by either location of tumors or age or other facors?

Dr. Christopher Lieu 43:39
Yeah, we had talked about the age and the fact that sometimes patients have mutations that don’t have anything to do with cancer, so that can be a confounder that we have to be very careful about. But then, this idea that maybe we’re missing small lung metastases or peritoneal metastases, where they’re in the lining of the abdomen, I think that’s what keeps us up at night, right? And this idea that, are we going to miss patients that may benefit from chemotherapy? Are we just going to miss patients period that have cancer and we just can’t detect it? I think we mitigate some of that by having serial testing. Testing that’s done over the course of time. And so if patients are negative and they stay negative, that’s good. If they’re negative and they turn positive, that’s what we worry about. But I think that therein lies the risk. We want these tests to be perfect, but no test ever is. And so the question being, is it good enough? And that’s what we’re trying to answer. And then the testing is on site. I think for the study, they’ll get collected by the teams, and then they’ll be sent off, but oftentimes, these companies do offer at home blood draws.

Julie Clauer 43:42
It is very compelling, for patients from a trial perspective, and is in terms of cost. All those testing costs would be covered as part of the trial.

Dr. Christopher Lieu 45:00
That’s correct. Great question, Julie, that’s correct.

Manju George 45:04
This is about CHIP. So a test such as Signatera, you don’t have to worry about CHIP, right?

Dr. Christopher Lieu 45:11
Yeah, because it’s a personalized assay, and this idea of testing it, getting a personalized assay developed off of that really does help us with a sensitivity. It really does.

Manju George 45:26
Okay, thank you.

Dr. Christopher Lieu 45:28
Guys, thank you so much for taking the time. These are phenomenal questions and you guys are way more informed than even some of our practitioners. It is so fun to talk to you guys, and you guys are asking all the right questions, and really appreciate your interest in this, and hopefully patients will enroll, and they’ll find it interesting. The hope is that we’re going to change the way we treat stage III colon cancer. That is the hope. But at the least, at the very least, we’re going to learn a lot, and we’ll do better, and we’ll be better. So thank you guys. Really appreciate it.

Manju George 46:03
I want to say that we will have the CIRCULATE-US as a feature trial in COLONTOWN University, and our hope is that patients in COLONTOWN are, in general CRC caregivers and the patients in the public will be able to access it and find more information. The video of this talk will also be linked there, so we are hoping that this will be a great educational resource for everyone involved. Dr Lieu, thank you so much for your time, this is excellent.

Dr. Christopher Lieu 46:32
Thank you everybody. Have a wonderful day.

Manju George 46:35
Thanks everyone for attending. Take care.

Dr. Christopher Lieu 46:38
Bye bye.

Manju George 46:38
Bye

DocTalk
2022
Dr. Lieu
ctDNA
Early-stage
Trials

In this DocTalk, Dr. Chris Lieu goes over CRC screening tests, including newer DNA-based tests that focus on CRC and multi-cancer early detection tests. In the second part of his talk, he covers the CIRCULATE-US trial for high-risk stage II and III colon cancer patients, which as of May 2022 is currently enrolling. This trial will address questions around the clinical utility of Minimal Residual Disease ctDNA testing. You can find more information about this trial in our Featured Clinical Trials Learning Center. Recorded with PALTOWN Scientific Director Dr. Manju George in May, 2022.

Table of contents

00:00: Introduction
01:19: Objectives
02:35: Colorectal Cancer 101
02:45: CRC Stats 101
03:04: Risk factors for CRC
04:14: Incidence of CRC
05:59: Take home point
06:45: CRC screening
07:03: ACS screening recommendations & tests
08:10: USPSTF screening guidelines
08:50: Take home point
09:38: Role of family history of polyps in screening
10:46: Predictors of CRC screening rates?
12:45: Tumor DNA-based screening approaches for CRC
14:01: Stool-based DNA testing
16:09: Intro to liquid biopsies
16:36: CtDNA: Properties & terms
17:40: CtDNA: Advantages
18:13: CtDNA: Disadvantages
19:27: Take home point
19:45: CEA vs ctDNA
20:44: CRC specific ctDNA testing
21:00: LUNAR-2 assay: The test, sensitivity & specificity
22:50 the 12,000 patient Guardant ECLIPSE trial
23:40: Multi-cancer Early Detection Tests, how do they work?
25:36: The 15,000 patient CCGA study
28:06: Take home point
29:01: Minimal Residual Disease (MRD) & ctDNA kinetics
31:15: Are findings of a ctDNA test actionable?
32:15: Adjuvant chemo for stage III colon cancer: Room for improvement
33:00: CIRCULATE-US
34:04: Is ctDNA in CRC ready for primetime?
34:55: Final thoughts
35:20: Q&A — Patient selection for Stage II Colon cancer
36:50: Q&A — Locations?
37:30: Q&A — How can patients talk to their care team about CIRCULATE US?
39:50: Q&A — How to enroll, info for patients interested.
40:50: Q&A — How to identify the different kinds of liquid biopsy or ctDNA tests? MRD vs others
42:13: Q&A — Trial for colon and rectal?
43:00: Q&A — What affects test sensitivity?
45:00 Q&A — Costs?

 

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CtDNA DYNAMIC II clinical trial

CtDNA DYNAMIC II clinical trial

DocTalk
2022
Dr. Tie
ctDNA
Stage II
Trials

In this DocTalk recorded August 2022, Dr. Jeanne Tie from The Walter & Eliza Hall Institute of Medical Research in Australia discusses her ctDNA DYNAMIC II trial with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
04:29: Minimal residual disease (MRD)
06:06: Duke’s staging
07:11: AJCC TNM staging
07:50: Adjuvant treatment for early-stage CRC & challenges
08:53: Things tried in stage II Colon cancer
11:00: Better risk stratification in stage II colon cancer
11:59: Clinical dilemma in stage II colon cancer
13:50: Other challenges
15:55: How to move the field forward?
16:30: Circulating tumor DNA, what is it?
18:12: CtDNA detects MRD
19:19: CtDNA dynamic reflects tumor burden in CRC
20:04: Post-op ctDNA detection and what it means
23:29: CtDNA dynamics — Real-time monitoring & its value
25:18: Serial ctDNA — What info does it provide about adjuvant chemo?
26:35: GALAXY trial results: Role of adjuvant chemo?
27:50: The DYNAMIC II trial
30:00: DYNAMIC II — CtDNA assay used
31:02: DYNAMIC II — Main study results
31:35: DYNAMIC II — Additional results
32:25: DYNAMIC II — Summary
35:00: DYNAMIC III — Design
36:19: Post-treatment ctDNA, role?
37:25: Trials for CtDNA positivity after Adj treatment
40:00: Q & A

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN.Welcome to my first Doc Talk of 2026 and for those of you who are joining live, welcome. And I am so excited to have Dr Kopetz with us. And as many of you know, he’s no stranger to us in COLONTOWN. He’s an amazing oncologist, a very well known researcher , who designs these amazing colorectal cancer trials, and is a speaker at all the international and national conferences, and has received so many awards. And in between all of that, he finds time to engage with us, and for that, I’m so grateful. And he has many titles and honors, and I think to us, he’s a beloved oncologist who’s focusing on BRAF and KRAS mutated colorectal cancer. And so once again, I’m so thrilled to have Dr kopets with us to talk to us about the 2026 BREAKWATER updates. Welcome Dr Kopetz.

Dr. Kopetz 1:14
Yeah, thanks so much for such a delightful and kind introduction, and thanks for all that you do, and you really do such an amazing job of educating and advocating. And so we’re so grateful for community, for you as well. So delighted to be able to share some of the updates in BRAF.And I thought during this, I would take opportunity to kind of take a step back with a little bit of history, but then really talk about where we are. How are we thinking about this in 2026 so with that, I had to start with just the complexities that we’re dealing with. Don’t worry about interpreting all this. This is for the gurus in the field. There’s a Frank McCormick, he’s kind of considered one of the fathers of RAS and he’s kind of put together this pathway about all the complexities of how normal cells and then cancer cells signal. We kind of think about, and you may have heard in biomarker testing, kind of the key ways that colorectal cancer can acquire mutations. These can be through KRAS, NRAS mutations commonly, but also BRAF. And BRAF is a distinct entity. It’s probably the one that we were able to target first, but a lot of the lessons that we’re learning, and we’ll come back to this point that in BRAF are now being applied to KRAS G12C, and think in the future, G12D will be following right along in this path. So hopefully these wedges of targetable oncogenes will continue to grow.

Dr. Kopetz 3:05
Okay? I said BRAF was targetable. This now goes back for more than a decade where the kind of first inhibitors which some brilliant medicinal chemists figured out that you could actually target this specific mutation that’s present in BRAF. Now I’ll take a moment to say what we’re talking about is a BRAFV600 E, so it’s the most common mutation, but there are others. Now the others are a little more complex. Everything that we’ll be talking about in terms of targeting is really this most common V600E mutation. Others we’re not fully sure what to do with, because they’re so heterogeneous and complex. But the BRAF V600E, also common in melanoma, and some of the initial studies that kind of a classic one.

Dr. Kopetz 3:54
This is one of the first studies that we ran where we said, okay, let’s treat melanoma. Let’s treat colorectal the same and we got very different outcomes, and that kind of set us off down this path to try to figure out what is it that’s unique about colorectal? How do we better target that? So there’s really two main crux, right? We have to improve the shrinkage of the tumor. And then, importantly, really, really target the durability. And we’ll talk about that, about how can we keep the cancer, shrink it down, and keep it down for as long as possible? So a lot of the work has been trying to do both, and you’ll see progress has been made there. All right, so let me take a step back. If you were a medical student, maybe first or second month of medical school, you would get introduced this concept of homeostatic regulation and how it’s used in the body. But I think it’s a useful concept for us to understand, and it’s this idea that our bodies like to be in a certain condition and that they have feedback mechanisms to keep us in that that condition. And there’s the more critical the pathway is, the more critical that regulation is, the tighter the feedback is present. And it turns out that this growth factor pathway, we call it the MAP kinase pathway, it incorporates K RAS, NRAS, BRAF. Those are incredibly important for cell growth and healthy cell division, and so that the cells, especially the colon cells, have a lot of these mechanisms to keep that level of signaling just right. so this is homeostatic. And Walter Cannon really was the–and you can see how, just by virtue of the picture, how old this concept is, but we still see it.

Dr. Kopetz 5:58
So what does it mean? Well, when we are in normal physiology, you can think about your glucose levels, if you’re not a diabetic, about how tightly regulated that is, but even something simple, like your body temperature, right? So you go out and sit in the sun, your body temperature rises, your brain recognizes that. It then dilates your blood vessels and also induces sweating. And then the response is, your body’s temperature is restored, right? Very simple concept, but it’s this kind of regulation to say your body wants to keep its temperature in this really tight range, and it’s going to do everything it can to maintain that. So the same thing happens after targeting BRAF, right? So in a BRAF mutation growth signaling this tumor cell is has a level of signaling that it wants, and we can give an inhibitor of BRAF, but there are feedback mechanisms that this tumor uses to say, nope, nope. That’s too low. I want higher signaling in this growth pathway. And one of the things that does is it activates EGFR, and it turns out that that then reactivates the growth, and the signaling is restored from the concept of the cancer cell, right? So this is homeostasis from the perspective of a cancer cell.

Dr. Kopetz 7:29
Now, I know there’s a lot of aficionados out there, so if I were to do this and try to do this simplistic Frank McCormick figure, it would look like this, right? Where there’s this signaling cascade, where one protein, activates the next one, which activates the next one, and down at the bottom of that is growth, right? This is the signal that says cancer’s growing. So if we have the BRAF mutation now, green is kind of signaling, an activation that’s just pumping out signal– we inhibit BRAF, what happens? It gets shut down, right? So transiently, it does a good job, but what happens then is you get these feedback mechanisms that get de repressed. EGFR now gets turned on. It now signals around that inhibition. We’re still blocking BRAF, but there’s pathways to get around it, and the signaling is restored, right? So that’s why BRAF alone doesn’t work, because the tumor is adapting so quickly. Now, when you then now come in and block BRAF and EGFR together, that’s when you can shut down the system, right? It can no longer compensate. You block two key nodes and and that was the premise. So fast forward through a lot of clinical trials and work, the BEACON study was the first to really show this, that when you combine BRAF and EGFR, compared to a control arm, you can improve overall survival response rates in this setting, and this was in a later line population, where there’s improvements here from 5.9 to 9.3 months. So improvements, there’s a bit of a tail. This idea that a proportion of patients can really have a longer duration of that as well. And the overall the side effects that you can see here as well. So this was several years back, and resulted in approvals for the second and third line. But we want to do better, right? And so really trying to understand, well, how could we do that? What’s the path forward there?

Dr. Kopetz 9:47
So gonna take a step back to the lab, because I’m a physician scientist. So we tend to do something the lab, bring into the clinic, learn from the patients, bring it back into the lab, and kind of keep iterating. And so throughout all of this, we’re doing a lot of preclinical modeling of cancer. And so, how do we do this? Well, we use mice for this. And why mice? It’s kind of weird, right? Like, why do we use mice? Why don’t we use other areas or other model systems? So it turns out that we actually have a fair bit of similarity with mice, like 95% similarity to mice in our genetic code. A lot of the ways that the our systems work are very similar. And then there’s some practical advantages that we can house them in controlled environments. Can handle them, and they have kind of been used for decades, continue to be used for a lot of this testing, right? And so we’re really really, I think, thankful for the opportunity to learn as much as we can in these systems before we bring to patients, so we’re bringing better things forward.

Dr. Kopetz 11:04
So, you know, just want to advocate. This is kind of what what the mice look like. So we actually use these mice that don’t have any hair, so they’re called nude mice. So, and then a lot of times the tumors are kind of grown on the flanks of the mice, so we can put little calipers around it and kind of measure how things are are going and advancing. Now we take extraordinary care to provide a really good environment for the mice. We actually have veterinarians whose sole job is every day to check on the well being and health of the mice, and they get all sorts of like things to socialize together through all of this. And so just know that we’re trying to be really good stewards of this, and we don’t take this research lightly, but we know that it’s really important for our patients. Okay with that a bit of aside, because we like to show as researchers how can we do things right? And so one of the questions that we were asking is, how can we improve the targeted therapy, and we did an earlier study where we actually combined with the earlier generations BRAF and inhibitors with with irinotecan and we had patients that their disease responded. So we gave chemo, EGFR and BRAF inhibition, and not just BRAF and EGFR alone. And so the question was, okay, we had responders, and it was working, and we had some patients that were really generous, and they said we will be willing to do a biopsy so that you can take tissue out from my tumor and you can study it. And so we’re so thankful for the patient’s contribution to not only enrolling in research, but to support things like this. But what that allowed us to do is say, Okay, I’m going to take that piece of tumor, I’m going to take it back to the mice, just like you saw, and I’m going to grow that patient’s tumor on the flank of the mouse, and I’m going to propagate that tumor, so I can treat many different mice, and then I can treat that tumor with the targeted therapy alone, the chemotherapy alone, or the combination. And then ask the question like, if that model works, what was that the patient was responding to? They got three drugs. But did they need all three? Maybe you only needed two in this or our other one. And we were really intrigued. And I just showed three examples here, where you want to see things kind of going below the lines, the lower, the better, smaller the tumors here. And what we found was that the targeted therapy slowed growth. Chemo slowed growth, in two of the models, but you only really got regressions and things shrinking down when you did the combination. And so that was a really important finding for us. Now it turned out because I wanted to show all the data that one on the far right here. What that said is, you know what? The targeted therapy didn’t do anything. It was all chemotherapy doing the heavy lifting here, we would predict in this patient. And so we kind of expanded that out and looked at some really resistant tumors and showed that indeed, that when you combine this, we were using a full theory regimen, so irinotecan and 5FU, that you could really get these synergies and really suggesting that there is opportunities to improve outcomes and the durability through this. So that kind concept, as well as the idea to say, well, let’s try to get this into more patients sooner, really led to the idea of the BREAKWATER study.

Dr. Kopetz 15:06
And so what did we do? Well, designed this study, randomized 637, patients to a standard of care without targeted therapy at BRAF. Patients could still get BRAF and EGFR in second or third line because it was approved. But the idea is to start with standard chemotherapy in the control arm. Or EC, encorafenib, cetuximab and FOLFOX or EC alone as a kind of a third arm. And so we were trying to gather some data, like, do you need the chemotherapy there? And then we’re looking at progression free survival, response rate. Here’s the characteristics of the patients enrolled, and this really reflects a bit of what we see in kind of general practice here. So what do we see? So remember, we said we want to improve response rate and durability. So first thing we said is, let’s look at response rate. And indeed, if you look at the blue bar with the EC and FOLFOX now we had two thirds of patients approximately responding to the therapy, meaning the tumor shrank down by 50% or more, versus 37% with the standard of care therapy, a little more than a third. And that this was durable, and that was encouraging. So when we get a response and there was some increased durability, now one of the terms that we use to measure durability is progression free survival, as you’re likely aware. And so we looked at that progression free survival curve, what we saw was an improvement in progression free survival of seven to 12 months.

Dr. Kopetz 16:42
So what does that mean? I’m sure many of you are well versed in these curves, but I thought it was always worth to do a little bit of a primer about what this means. These are a measure of any time point along the way, the number of patients that are still receiving therapy and have not progressed. So we can look at this, and for example, we can see about it at six months time frame here, that 60% of patients were still on therapy and were free of progression. And over time, more patients progress, and you can see the curve coming down. And so by the time you get to 12 months here in the control arm, about only 30% of patients were no longer progressing. So we’ll say, Okay, that’s good. How do we describe the curves here? And so you’ll hear this term median, right? Well, what does that mean? Well, it means, really at that 50%, meaning half the patients progress before, half the patients progress after that time point. So the median here we use as our estimate. And you can see, you know, the median is a little over six months 7.1 exactly here in the control arm, but that median is closer to 12.8 months here in the in the experimental arm. Now we can use these numbers and now start to compare across different settings, BRAF has always been a tough or has not always felt to respond well to standard chemotherapy. FOLFOX, FOLFIRI alone, even with Bevacizumab, usually get like 6-7 months. Now, while the non BRAF colorectal cancer is usually around 10 months or, maybe 11 months. So this is really striking, because we’ve taken a tumor that had well worse than your average outcomes, and now with this regimen, now we have a median progression free survival that looks better than all the other tumor types, subtypes of colorectal cancer out there. So it’s a really big kind of chip. And I think, as we mentioned before, we also see this, this tail, and this gets a little noisy because we don’t have as long a follow up yet, but this idea of, this flattening here, and about a third of patients, even at two years, are kind of still ongoing, and that’s a much higher tail, as we say. So, the idea that there’s a subset of patients that we don’t fully understand why, but they get a really durable, prolonged outcome from this. So we need to know more. We need to make more people like that. So that’s one of our goals.

Dr. Kopetz 19:48
All right. Now we talked about, there’s a third arm, if you recall, right where encorafenib, cetuximab was used alone, no chemotherapy. And here’s the orange line for the encorafenib Cetuximab alone. So didn’t do better than the standard chemotherapy, but didn’t do worse either. So it is, it kind of is in that middle ground. The kind of interpretation of this is, you know what this is, typically the the EC alone is better tolerated than FOLFOX. If there’s a patient that is maybe not the best candidate for FOLFOX, can’t really tolerate it well, for whatever reason, there’s an option to at least do the EC alone, and that may be better than than other options for that unique case. But for most patients, we think that that is EC and FOLFOX should be there. Now, progression free survival is important, but remember I mentioned that well, the control arm could go on and they could get BRAF and EGFR right, and so is this just shifting when things are and if that’s the case, for what we really care about is, can patients live longer with this regimen?

Dr. Kopetz 21:08
And so that’s the overall survival– very similar. We use this median to say half of patients now, in this case, are living longer and half are living shorter than that estimate. But what we saw was that the standard of care about 15 months– what we expect on average, but that we’re able to double that number. So really, a doubling of overall survival is a really, a compelling number to see. And so now getting medium survivals that are much, much higher. What about that third arm? Kind of fell right in between. So, it’s not an unreasonable consideration to kind of start with that, but still not as good as the EC and FOLFOX alone.

Dr. Kopetz 21:59
Okay, thanks doc for showing all those complex slides. What does it really mean? So, here’s kind of that graphic summary, thanks to nano banana. I’ll say a little AI generated one. But what you can see here is that really, progression free survival, you’re reducing that risk of progression. And then that survival time is, in essence doubled, going from 15 to 30 months. Those are the kind of the key takeaways. Now, what about side effects here? Most frequent side effects are shown here, in this figure. And what we can see is that nausea, diarrhea, those kind of things that we normally think about with the chemotherapy, is about the same between these and that the real difference here is kind of in some of the BRAF specific toxicities. In this case, it’s looking at arthralgia and rash. So you can see that the combination of with encorafenib+ cetuximab can generate some rash. We use grading systems to grade one two, which means a more mild rash and arthralgia, and still impact quality of life. And so it’s something that we manage and work through with patients.

Dr. Kopetz 23:35
Now, one of the questions that’s come up is like, well, is this better than if we did really intense chemotherapy at the beginning. And so there are regimens where we put FOLFOX and combined with irinotecan and what we call the triplet regimen. And so this was just a bit of an aside to say that we looked at what patients could have gotten some of these more intense regimens, and then looked at some of the survival here. And the bottom line is that it didn’t matter in the control arm, if you use really intense chemotherapy that that really you got the best survival with the with the EC FOLFOX. Now we’ve been talking a lot about FOLFOX, and this is data from last year. So, but what about alternates? So we like our acronyms as we know and so FOLFOX, of course, is a 5FU oxaliplatin. Oxaliplatin is the neuropathy one. There’s the FOLFIRI, it is irinotecan and 5FU. And there are situations where patients, just may not be best served with FOLFOX. They may have had prior oxaliplatin exposure, may have had an early stage tumors, resected, got adjuvant FOLFOX, for example, and then the disease recurred later. Or maybe patients that have kind of diabetic neuropathy, for example, where they have other reasons for nerve damage. And then sometimes it’s just a lot of providers are looking at the side effect profile and just saying, you know, I just think FOLFIRI is a better choice in general to start with. And so all these things now to the credit of the sponsoring company for BREAKWATER they heard us when we said, we really want to have more options for our patients. And we want to generate data as well with with FOLFIRI. Right now, most companies, I would say don’t really do two studies to look at the same thing, but they heard us and and agreed to run this smaller study. So remember, before we’re looking at over 600, here we have like, 140 something patients.

Dr. Kopetz 26:02
And now this is just after the BREAKWATER finished enrolling. We then opened and enrolled this one. Endpoints, response, rate, side effects, very similar here. There was, interestingly less arthralgia and rash in this one, not sure I fully understand it, but it was that’s kind of what we saw there, but really low rates of grade three toxicities in general. So didn’t add much in terms of toxicity. Here again, we saw very similar, about two thirds of patients responding versus about 39% of the control arm there. So encouraging that there’s that much higher response rate, even with a FOLFIRI backbone. And overall survival, really early, we will have some updated data we’ll be sharing in Jun. But that this kind of really nice early separation of the curves that were similar in magnitude to what we saw before. So that’s great. It tells us FOLFOX and EC can be a backbone. FOLFIRI and EC can be a backbone.

Dr. Kopetz 27:15
So wanted to spend maybe the last few minutes and just talk a little philosophically, and that little more of the science here, right? So one of the questions is, wow, we’re doubling overall survival, not by bringing a new drug in, but by taking a drug that we would normally give in second and third line, and now combining it with our first line regimen. What gives? Yes, maybe it’s better, but why a doubling in overall survival? And, I shared some of that kind of concepts pre clinically, and I didn’t get into a lot of the deep science that led us to think that this could really work. But one way to really think about this is that when we give chemotherapy alone, and these are completely arbitrary numbers. We give chemotherapy alone, there may be 10 different ways that the tumor cells can develop resistance. When we give BRAF EGFR inhibition, again, maybe 10 different ways that resistance can develop, including acquisition of KRAS and NRAS secondary mutations, for example, which are really well described and and I didn’t present that data, but this idea that other mutations can develop that can reactivate the pathway. Now the concept, though, is that a new KRAS mutation is not going to make them resistant to FOLFIRI, right? And likewise, some of the resistance mechanisms to the chemotherapy may be blocked by BRAF and EGFR. And so it’s not that the cancer can’t find a way to develop resistance. Gosh, it almost always does, but we’re just making it much, much harder. So the idea is that the shared pathways of resistance are constrained, so that’s this lower level of number of mutation or resistance pathways that can occur. So by putting them together, you really make the tumor work hard to find some mechanism that will result in resistance to the chemo and resistance to the targeted therapy together.

Dr. Kopetz 29:25
Now it’s a great theory. Did we actually see any data about that? Like is what we have there? So I mentioned that, and we did a lot of work and published papers around different mechanisms of resistance to BRAF and EGFR when it’s given alone. These secondary mutations are kind of the key ones that we see. So what we did is presented some of the data on the CT DNA, so you can use circulating tumor DNA to explore the mechanisms of resistance there. And what we showed was that by month seven in the targeted therapy arms of the of the BREAKWATER study that EC alone, about 38% of patients already had these resistance mutations that were developed and evident. They developed KRAS variants, NRAS, MAP2K1, which is downstream, amplifications like MET or BRAF exon deletions, all these things that have been shown. But when we combine it with chemotherapy, now there’s no selective pressure, really, to generate that the chemo can keep the cancer from growing, even with those. And only 6% of patients at month 7 in the combination arm had that mechanism of resistance. And you can see, even at the end of study, after prolonged treatment, that we were seeing much lower rates of these secondary alterations. So we’re trying to and this is really where we are at the frontier of trying to understand this, is kind of the idea to say, how can we constrain the mechanisms of resistance. What are those two remaining shared mechanisms that are allowing the cancers to evade? We don’t think they’re genomic. They’re not acquiring second mutations, necessarily, that’s driving this, but there’s some tumor plasticity, state changes that are occurring. These are kind of the terms you’re hearing in oncology field now about what’s the plasticity of the tumor, like, how is it adapting to these different states? So stay tuned. But this is really where we’re working on it. We’re trying to nip these remaining things in the bud.

Dr. Kopetz 31:42
Okay, so adaptive resistance, you got your primer on homeostasis, right? There’ll be a test later on the homeostatic regulations, but this combination of BRAF and EGFR blunts that. It is a standard of care, but that the chemotherapy combinations have compelling biologic rationale, as well as the really now strong clinical data, doubling overall survival. And so that we do think that EC and FOLFOX, and I would say EC and FOLFIRI as well, are a new standard of care in the US and and I think this is even when you compare to the really intense chemotherapy there. The key for all of this is that in order to actually act early and take advantage of all this great biology, you got to know what your molecular subtype is, and so this is why one of the key things about this is molecular testing early. Don’t wait till second or third line of treatment to really start to act on the molecular subtype of your tumor. It’s really important for patients to understand their molecular subtype at diagnosis and act on it, if there’s ways to act on it, and so that’s really a challenge for us to make sure we’re communicating that to oncologists throughout the US and throughout the world. And I think increasingly we’re seeing that most, most providers now, are getting that molecular testing done and and making treatment decisions early. And just want to end by thanking the patients first and foremost. We are always trying to do better, and this is always bittersweet. When we see advances, because we see progress, but we also recognize how far we still have to go. And I just wanted to thank the the patients in the past who really participated wholeheartedly and in these, this clinical trials and the patients in the future that are still upcoming, and where we hope we’ll have better therapies to offer. So with that, thanks and happy to take some questions.

Manju George 33:57
Okay, thank you, Dr. Kopetz, that was an amazing presentation. As always, you take us through hard concepts, explaining them very simply. So thank you very much. So with questions, in COLONTOWN, people have posted some questions, and I had emailed you them, so maybe we can start with those, f you’re okay,

Dr. Kopetz 34:20
Sure, absolutely.

Manju George 34:22
Yeah. So the first question is, of all the patients on the different E plus C combinations, what’s the longest time in your experience someone has been on it? And the second part of it is, what do you think is the reason? Like, what have we learned?

Dr. Kopetz 34:39
Yeah, great question. I don’t know the answer yet about why. So we’ve had some patients that are now four years or so, on some of these combinations. The front line, chemo, plus a lot of times, what we’ll do is just continue the 5FU and encorafenib, cetuximab, and we’ve had patients on that two and a half years going on three so that really there is a subset of patients who can do really well with it. We don’t understand, we don’t know, if the tumor has some biology that’s called adaptive mutability, which is how the tumors change, in essence, they kind of turn themselves in and increase the rates of their secondary mutations, so that this is one of the ways the tumors can adapt. They start making more mutations. Each time they divide, they have more mutations. And the hope is they, imputing a lot of of intent to them, but the idea is that they, as they develop a lot more mutations they can find, stumble across other mechanisms of resistance. So there is some hint, maybe, that some of these really patients with really long duration don’t engage this adaptive mutability pathway, so their tumors don’t use this as a mechanism. But that’s I think, work that we still have to sort out.

Manju George 36:24
Okay, thank you. The next question is, what advice do you have for someone who was on FOLFOX plus E plus C and is now on maintenance 5FU plus E plus C. Is adding irinotecan to this at progression a good idea. If not, what else can they get?

Dr. Kopetz 36:44
Yeah, great question. So one point, not the question, is that when there’s this inclination, no one likes the pump, I get it, right? There is this inclination and maintenance to say, well, EC is working, what if we just stopped the pump as well as the oxaliplatin, right? And I really, I think that biology suggests that you need that 5FU, so I would say, try to maintain the 5FU now, the great question was, should we add more on to that? We just don’t know, to be frank, on this, I think, there is this sense that trying to put something into it before progression may not be the best approach, but we honestly just don’t have a good sense of this yet. I think we have tried it in some patients where you’ll start to see things kind of creep up. It’s not that full resistance is developed to 5FU and encorafenib Cetuximab, we either add the oxaliplatin in, or, if there’s neuropathy, add in the irinotecan, alternatively, so and that can work. The question is, is that better than than using irinitecan later, we just don’t know.

Manju George 38:07
For someone with a sustained response to E plus C and E plus C plus FOLFOX who is now progressing, what’s the best option next? Yeah, similar question.

Dr. Kopetz 38:19
Yeah. Great question. So there’s a few approaches there. There are studies to say, remember we talked about that these tumors are really dependent on this MAP kinase pathway. So there one approach is to say, well, let’s double down on this inhibition. And there is another protein downstream called ERK and so there’s a next generation ERK inhibitor. We tried ERK once, but that was really intermittent ERK inhibition, and that didn’t work. For the officianados, that had been tried once, but we think there maybe a better inhibitor. So there’s a study ongoing to double down on that pathway inhibition. The other is, we talked a little bit about the plasticity and the state changes. And so we have a study through the ETCTN or the NCI, federal government sponsored study, where we’re trying to use an epigenetic modifier. It’s called a BET inhibitor, but the idea is that it really inhibit some of these state changes. And so that’s a study that’s enrolling right now. And then there are studies to kind of ask questions about, well, what if you go and you do something else altogether, right? Like, if you haven’t gotten FOLFIRI, maybe you go and get FOLFIRI, you give it a break from EC. And what we see is that a lot of times, the tumors will rewire in order to evade the FOLFIRI. Sometimes they’ll shift back into a state that becomes EC sensitive. And so this idea to say, can you do what we call a re challenge, which is do something separate from MAP kinase targeting, and then come back and hit again with the MAP kinase. We see benefits with that with the EGFR inhibitors. This is a RAS RAF, wild type tumors that you can inhibit EGFR and then take a break and then come back and do EGFR alone. So that’s another strategy, but I think there still is a lot more that we can do.

Manju George 40:26
Okay, okay, thank you. So I think that brings us to the next question where people have asked, Can the BEACON and BREAKWATER regimens be reused? And then, if yes, like with EGFR inhibitor, we say, like, four to six months. Do you have any idea what’s the break that people would need?

Dr. Kopetz 40:48
Yeah, we don’t, to be frank, I think, we would typically check Ct DNA to make sure there’s no secondary mutations. All those are uncommon after BREAKWATER. But can be seen. So just make sure those have gone away. Because if you can still see a KRAS mutation present on CT DNA, then maybe it’s not long enough. You give it a little more time. But you’re right, we kind of think about, four month or so time away. It may be enough to have the tumor resensitize,

Manju George 41:25
okay, okay. And then the next question is, for people who miss the first line option of breakwater, what’s your advice on using this in second line or third line?

Dr. Kopetz 41:36
Yeah, great question. I think it does give us confidence that, bringing EC in combination with chemotherapy may be better than EC alone. So the the SWOG study that I showed the one with then looked at and second or third line looked at, in essence, BRAF, EGFR, with irinotecan, and that showed activity. And so I think if, for example, you got FOLFOX alone, I think there’s a rationale to say that you could do an EC, irinotecan, or EC FOLFIRI, in a second line setting. In that sense, all we have are these kind of cross trial comparisons to suggest, so in it, and we don’t have that, what we say level one, randomized data, but that tends to be my practice in those situations.

Manju George 42:35
Okay, thank you so much. The next question is, what’s the status of the E plus C Nivo trial. Do you have some updates?

Dr. Kopetz 42:44
Yes, so we’re going to be so that is a small kind of phase II study that is trying to build on the EC nivo single arm data there. The hope is there’s a subset of patients that may be deriving benefits from the nivo. So that one we should be able to present at ASCO this year. So we’ll have some of that that it was small the control arm was I think less than 30 patients there, but we’ll have that data.

Manju George 43:22
Okay, okay, thank you. So the next is, what is in line next, in terms of new regimens, now that breakwater is done, where’s the field heading? What’s cooking in your lab?

Dr. Kopetz 43:36
Yeah. So we’re really interested in the these epigenetic state, inhibition, I think the the idea to say that, that there’s a subset of cells that are kind of are adapting in some way to evade the those therapies. And if we can understand what those dynamic changes are, then we can potentially, kind of come in with inhibition and and look at different ways, the different vulnerabilities that may come up now. These can take the form of, potentially, thinking about ways to combine it initially, like, how do you extend duration when combination? Or can you understand these paths of resistance and then, kind of treat upon progression? So we’re trying to explore both ways.

Manju George 44:39
Okay, okay, thank you. So I’m done with those questions, and then here we have some Q and A questions. So those who are listening, if you have more questions, please add them in there. So the first question is, if there is a chemo for life patient, is there an argument to be made to do standard of care followed by E plus C or vice versa to prolong longevity rather than use the efficacy of both treatments together?

Dr. Kopetz 45:06
Yeah, no, that’s a, I mean, that is, that’s the angst, and I think that’s what surprises us about BREAKWATER. So the control arm, even if we limit to those patients who and the majority of patients, had access to BRAF, EGFR and second line in the control. So this was that study, in essence, the say standard of care chemo, followed by EC. How do patients live longer than when you put it all together? And the short answer is, it really matters, when you put them all together, that there’s a true synergy. It’s not kind of a one plus one equals two, but you’re getting much more. We think it’s because of and I know this looks like this question was like part way through my lecture, so hopefully I answered it with the kind of explanation of the how we’re trying to constrain the mechanisms of resistance. But I really think the data suggests that in this case, at least, it’s not about stringing it out, but really about bringing the best regimen together at the beginning.

Manju George 46:09
Okay, thank you. The next question is for can this drug regimen be used for patients without a BRAF mutation?

Dr. Kopetz 46:19
Yeah, great question that the short answer is, not, at the moment, there are, there been kind of different areas to explore in this space to kind of think through how you know what BRAF can do. One little bit of an aside is that there has been a recognition that the skin toxicity of the BRAF and EGFR combination is much less than you’d expect with EGFR alone. So the Cetuximab rash kind of acneform, kind of face trunk, but when we give the BRAF inhibitor, it’s actually less. They actually have much less, patients still have some skin rash, but it is substantially less so one of the areas has been like, Okay, well, could you use BRAF inhibitor to try to modulate some of that toxicity? But now, instead of taking it as encorafenib, as a pill trying to reduce that toxicity, there’s a company that’s actually made an essence of BRAF inhibitor skin cream. And so the idea is, could you just put a BRAF inhibitor skin cream on and treat the EGFR rash there? So that’s one kind of creative way where the BRAF inhibitors are being utilized there and I think in some extent, these drugs were engineered to be more potent against the mutated form of the protein. So that mutation is not there, it makes it a little harder to kind of utilize it, although I still think there’s some creative opportunities there, we just have not fully explored.

Manju George 48:07
okay, but in general, like to as a line of treatment for somebody without a BRAF mutation. You don’t generally recommend it?

Dr. Kopetz 48:16
yes, I should just be clear with that. No, we shouldn’t use it. There’s really no data about using encorafenib for anything but that BRAF V 600 E. Now the corollaries we also, I talked a little bit at the beginning about what about other BRAF mutations? And I think the data really has not.. we’ve tried for some of them. There’s different classes as we talk about them and characterize them, we tried these in different ones, and they have not provided benefits. So I know it’s tempting, because sometimes you say, Well, my report says a BRAF mutation, but they behave very differently than the V600E.

Manju George 48:51
Okay, thank you, for those who can only tolerate E plus C alone. Can it be continued once progression occurs, will it slow growth? Does it have to be stopped once progression occurs?

Dr. Kopetz 49:06
Yeah, so good question. We don’t fully understand all the dynamics of it. What we can say is that when we’re doing EC alone, that the mechanisms of resistance tend to be genomic, and kind of a get acquired pretty robustly. So we do think in those settings that kind of stopping the EC is beneficial, and that doesn’t necessarily result in any kind of progression or that continuing, it doesn’t result in more inhibition of the growth.

Manju George 49:46
Okay, so the next couple of questions, like in the BREAKWATER trial, do you have some data on whether people were able to get to surgery to resectability?

Dr. Kopetz 49:57
Right, yeah. So we do. There is some data suggesting, perhaps, that more patients may be able to get to surgery. We just, we need to kind of get that data little cleaner. It’s been a complex area, because there were several years because of the biology of BRAF and the outcomes, surgeons had just said, I’m not going to take a patient with a BRAF mutation to surgery. I just don’t think that it’s kind of beneficial in that regard. I think now the field has shifted a little bit, and people are more willing to do that, and we are seeing that, we are seeing anecdotally even, that some patients that go to the or for resection of their metastatic disease can have complete pathologic responses, which is just really extreme, great response to the treatment.

Manju George 50:53
Okay, okay. And then the next thing is do you have some breakdown of the people on BREAKWATER like, what kind of mets? I think you had the table, right? How many people had peritoneal Mets, and how did they respond?

Dr. Kopetz 51:09
Yeah, we don’t have breakdown by sites. It’s a great question. And so that we don’t have that data to say, you know that this group of patients perform better than the others. We do have in some of our waterfall plots, we can try to tease that out by eye, and then there are kind of we call forest plots, that have looked at that. The numbers are just small, but it looks like, in general, they’re performing better, but we don’t have, like, a breakout of response rate, for example, by peritoneal mets in particular.

Manju George 51:50
Okay, so next question is, what trial options are available for BRAF patients after BREAKWATER, you mentioned the BET inhibitor, right? Like, what else?

Dr. Kopetz 52:02
ERK and the rechallenge are the main ones that are out there right now being explored.

Manju George 52:08
Okay, the next question is, can you speak to any BRAF targeted therapies that are in the pipeline that are expected soon?

Dr. Kopetz 52:15
Yeah, so there’s work on on degraders. So degraders are one space. The idea is, instead of inhibiting it, can you grab the BRAF and just pull it and destroy it? So just kind of chew it up. Now, the cell remakes it, so you have to keep grabbing the BRAF and destroying it. So that’s kind of one of them. There’s been other areas to try to improve upon them. Kind of these next generation BRAF inhibitors that has some characteristics about how the different BRAF and CRAF and ARAF all kind of linked together. So these other family members, it’s B, because there’s an A, B and C, by the way, in case you want to know where the B came from. So there’s these other family members in the RAF family, how they interact. So there are some smart chemists out there trying to sort that out. We don’t necessarily know that they’re going to be better than what we have right now.

Manju George 53:19
Okay, okay. And then what about immunotherapy combinations? Is anything new being tested?

Dr. Kopetz 53:26
Yes, we have the PD-1. And that was done when we are looking back in the preclinical models. And again, always trying to learn everything we can and thinking about other strategies. The intriguing thing is that it really looks like that more than PD-1 is CTLA-4 that is the one that’s driving a lot of benefit, which is a kind of a common theme we’re seeing in in colorectal in general. That PD-1 is okay, but CTLA-4, really, is kind of what induces a bit of greater responses. So there is some intriguing data to say if we had the SWOG study that the encorafenib, cetux nivo study, would a CTLA-4 be better than that. So, these are things that we just have to try to prioritize the questions that we ask and try to understand if that’s going to be better. The other is vaccines. So there are some. There’s been a lot of push. Elicio, for example, the company that’s been generating K RAS vaccines for pancreatic cancer and then for colon and many others have been whispering in their ear to say, think about BRAF. Think about BRAF. So that’s on their radar. And so the hope is that maybe there could be some vaccine strategies to to kind of follow since we are talking about a single point mutation. So it’s kind of well aligned for that.

Manju George 55:06
OK. Next question is, are we close to a CAR-T, options for BRAF V600E?

Dr. Kopetz 55:15
Great question. We don’t see anything. I don’t know I say close, I mean, I think CAR- T’s have just been tough to try to find the cells that can get into the tumor there. So, so I would say we still have a little bit of way to go to even get CAR- T’s, in general, in solid tumors working. But we’re starting to see some, some progress. The difficulty is that you know when you have a single point mutation, that it’s getting expressed by a TCR, and these are really more like TCR TIL therapies where you’re trying to target the BRAF itself is that you’re looking for just a single mutation, and sometimes it’s hard for the immune system to tease out, like, really small differences in there. A lot of the CAR- T options are targeting completely separate proteins that are on the surface of the tumors. So the CAR-T’s are coming in and binding something on the surface that may not be related to V600E, so maybe that some of the CAR- T therapies being developed can be applied to BRAF population, but may not be BRAF specific.

Manju George 56:33
Okay, okay. And then in the BREAKWATER results, do you see a difference in patients who are younger with the BRAF mutation versus the older, right sided tumors. Is there a difference in outcomes?

Dr. Kopetz 56:47
Yeah, so that we have some data on early onset BRAF that says that they are deriving benefit from the therapy just as well as patients that are average age of onset. So I think the you know some subtle differences, but that there are some distinctions. Now, BRAF, in general, tends to be associated with MSI high in later onset BRAF, so I guess the caveat is that early onset less likely to have a BRAF associated with MSI high more likely to be MSS, but within the MSS BRAF, they tend to do the same as average age.

Manju George 57:36
Okay, okay. And then this is my other favorite question. So, with the pharmacogenomics testing, because we are combining E plus C with FOLFOX or FOLFIRI. Do you think that there can be more tailoring of the chemo part of the regimen so that people can stay on it longer? Are there any efforts to do that?

Dr. Kopetz 58:01
So, you know, we’re still, I would say, nascent in our understanding of pharmacogenomics. We know for irinotecan, UGT1A1, there’s some older data about the utility of that to kind of tailor things that really is more relevant for higher dose. irinotecan, kind of saturates a lot of the metabolism transporters, for the doses that we’re giving every two weeks, it’s kind of less relevant. So there has been some discussion like, Well, gosh, could you increase the dose of irinotecan in a patient that may have just the right pharmacogenomic subtype there, and I think that there hasn’t been a lot of work being done on kind of dose escalating the chemotherapy based on pharmacogenomics. But certainly a possibility. The problem is we don’t yet have pharmacogenomics for why the patients are responding to BRAF, for example, so we don’t have good answers there.

Manju George 59:03
Okay, okay, I think we are at time. And thank you so much. This was an incredibly informative talk, and I hope we can have you back when you have new trials and give a talk.

Dr. Kopetz 59:18
Yeah, always a delight.

Manju George 59:20
Okay, thank you. Thanks to everyone who was able to join. And as I said before, a recording of the video will be posted in COLONTOWN University in about two weeks. Thanks. Thank you, everyone. Thanks. Bye. Dr. Kopetz, bye.

DocTalk
2022
Dr. Tie
ctDNA
Stage II
Trials

In this DocTalk recorded August 2022, Dr. Jeanne Tie from The Walter & Eliza Hall Institute of Medical Research in Australia discusses her ctDNA DYNAMIC II trial with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
04:29: Minimal residual disease (MRD)
06:06: Duke’s staging
07:11: AJCC TNM staging
07:50: Adjuvant treatment for early-stage CRC & challenges
08:53: Things tried in stage II Colon cancer
11:00: Better risk stratification in stage II colon cancer
11:59: Clinical dilemma in stage II colon cancer
13:50: Other challenges
15:55: How to move the field forward?
16:30: Circulating tumor DNA, what is it?
18:12: CtDNA detects MRD
19:19: CtDNA dynamic reflects tumor burden in CRC
20:04: Post-op ctDNA detection and what it means
23:29: CtDNA dynamics — Real-time monitoring & its value
25:18: Serial ctDNA — What info does it provide about adjuvant chemo?
26:35: GALAXY trial results: Role of adjuvant chemo?
27:50: The DYNAMIC II trial
30:00: DYNAMIC II — CtDNA assay used
31:02: DYNAMIC II — Main study results
31:35: DYNAMIC II — Additional results
32:25: DYNAMIC II — Summary
35:00: DYNAMIC III — Design
36:19: Post-treatment ctDNA, role?
37:25: Trials for CtDNA positivity after Adj treatment
40:00: Q & A

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CtDNA DYNAMIC II clinical trial

CtDNA DYNAMIC II clinical trial

DocTalk
2022
Dr. Tie
ctDNA
Stage II
Trials

In this DocTalk recorded August 2022, Dr. Jeanne Tie from The Walter & Eliza Hall Institute of Medical Research in Australia discusses her ctDNA DYNAMIC II trial with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
04:29: Minimal residual disease (MRD)
06:06: Duke’s staging
07:11: AJCC TNM staging
07:50: Adjuvant treatment for early-stage CRC & challenges
08:53: Things tried in stage II Colon cancer
11:00: Better risk stratification in stage II colon cancer
11:59: Clinical dilemma in stage II colon cancer
13:50: Other challenges
15:55: How to move the field forward?
16:30: Circulating tumor DNA, what is it?
18:12: CtDNA detects MRD
19:19: CtDNA dynamic reflects tumor burden in CRC
20:04: Post-op ctDNA detection and what it means
23:29: CtDNA dynamics — Real-time monitoring & its value
25:18: Serial ctDNA — What info does it provide about adjuvant chemo?
26:35: GALAXY trial results: Role of adjuvant chemo?
27:50: The DYNAMIC II trial
30:00: DYNAMIC II — CtDNA assay used
31:02: DYNAMIC II — Main study results
31:35: DYNAMIC II — Additional results
32:25: DYNAMIC II — Summary
35:00: DYNAMIC III — Design
36:19: Post-treatment ctDNA, role?
37:25: Trials for CtDNA positivity after Adj treatment
40:00: Q & A

Manju George 0:00
Hello everyone. Welcome to DocTalks. I’m Dr Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN. And today we have the pleasure of having Dr. Scott Kopetz with us, who’s going to tell us about the BREAKWATER trial. But before we start, Dr. Kopetz can you tell us how you got interested in doing clinical trials and working in GI oncology?

Dr. Scott Kopetz 0:25
Most certainly. So I think, like many, I had personal reasons to get into oncology. I lost my mother to cancer at a young age, and so I was motivated to tackle this, and ended up in GI oncology, because I just fell in with a wonderful mentor, Paul, who was here at MD Anderson at the time, and was working in colorectal cancer and just kind of fell in love with the clinical problems and the wonderful patients of course, and really have been inspired ever since by all of our patients.

Manju George 1:08
Thank you for sharing. So then, do you want to share your screen?

Dr. Scott Kopetz 1:11
Yep, absolutely. Yeah. So just delighted. This is always so much fun. And I just start by saying, really a delight to be able to discuss and to share some of the updates here, and want to touch on some of the efforts that are ongoing. I know it’s been a little while since we’ve had an update, and so I’ll start with a little bit of background, and then dive into where the field is now and where we’re going. So some conflicts: very involved in a lot of these companies that are involved in developing novel therapies for BRAF. So kind of a key point I always like to start off with, and so apologies for those of you that have seen this slide a dozen times before. But the idea is that this is a cancer that when we have a BRAF mutation, it results in activation of growth factors, or a growth signaling pathway, right? This is a normal, healthy pathway in your body. When you cut your skin, your epithelium- your skin cells, turn it on to grow and repair, and then it gets turned off. The problem when there’s a mutation in the pathway like BRAF is that it’s constantly on and these cells are then growing. And what we found, though, is that these cancer cells like to be in this state, and that when you inhibit BRAF, with a medicine like encorafinib, that you indeed can shut down that pathway. The growth turns off, but the tumor adapts. The cancer likes this state. And then in cancer terms, we talk about this as homeostatic regulation. It’s like the thermostat: If it’s hot or cold, things get turned on or off with your heat or AC to adjust, and it’s the same thing with with cancer cells. And so there’s a transient inhibition, but the tumor adapts, has all these feedback mechanisms. The wiring that turns on other things upstream through the EGFR receptor is one of the prominent ones, and then what happens is that same signaling pathway gets turned back on.

Dr. Scott Kopetz 1:11
So the fundamental concept, and why we are using combination therapy and BRAF is because when you inhibit that second node, the EGFR, then you can shut down that adaptive mechanism, and so the combination provides benefit where either one alone doesn’t. So of course, this is the rationale behind the BEACON study, which looked at the encorafinib, the cetuximab, the BRAF and EGFR, compared it to chemotherapy control, then and looked at both triplet with a MEK, which didn’t provide any benefit, or the doublet with the BRAF and EGFR, which showed very nice results and improved overall survival, increased response rate, was a nice building block then for us to now become a standard of care, but also recognizing ways that we want to improve.

Dr. Scott Kopetz 2:42
So one way to look at this is to say it’s clearly active providing benefit from patients. There’s a subset of patients who can be on this regimen for a really long time. There’s also a number of patients that get some benefit for several months, and then the tumor adapts and progresses. So one of the questions is, well, why is that? And one of the areas that we’ve been able to characterize is really understanding these mechanisms of resistance. This is a complex slide, but what I want to do is just to have you visually look at the control and looking for any red mark, and a red mark means there’s some acquired event in the tumor. You can see very little evidence of red but when you look at the treatments with the BRAF and EGFR, you see all of these red marks. These red marks are predominantly around RAS mutations. There’s some other ones. But really, this idea that KRAS and NRAS can get mutated, the tumor mutates those in order to maintain that addiction to that growth signaling. And so, there’s an example here of a case study. And this is something I reported last year at ESMO. And this is a patient that was on the trial and at the time of progression, after about eight months on treatment that we looked in the tumor by circulating tumor DNA. So all of these KRAS mutations. These are all present in different subclones. And this is a real challenge, right?

Dr. Scott Kopetz 2:42
How do we prevent these subclones from growing out and developing resistance to the therapies? So put a pencil on that -we’ll come back to that, and some interesting hypotheses coming on that, but just acknowledging that, that’s one of the limitations that we’re dealing with. So where’s the field going? This is a good foundation, as I mentioned, and I’ll talk about some of the studies here briefly, and not really focusing a bit on BREAKWATER study, which is our first-line trial, really trying to understand how we best utilize this.

Dr. Scott Kopetz 2:42
So first, let me share some of the preclinical data that’s ongoing, and asking, “Can we do better? Is the idea of targeted therapy and more traditional chemotherapy, can we combine those and get more benefit out of that?”. Well, one of the findings that we had when we looked at this in our mice work is–in the mouse, we can generate the tumors, we can treat them with one therapy, and then move into second-line in the mouse, and then, compare this to when we do it altogether. And what we can see is that this interesting phenomenon. We think about chemotherapy and targeted therapy is two different things, but the reality is that there is some degree of cross-resistance between them, meaning that when a tumor develops resistance to chemotherapy, itcan sometimes develop resistance to the BRAF inhibitor, even though it’s never seen the BRAF inhibitor, and then vice versa. So these are kind of complex figures, but I think the way to look at it is to say, here is the benefit of encoafinib in this model, when you give encorafinib and cetuximab in first-line, the tumor has never seen a chemotherapy. However, if you give chemotherapy first, wait for the tumor to progress, and then give the BRAF and EGFR, you don’t get as much benefit. So these models aren’t under control for as long. And interesting– the same with the chemotherapy, so the prior targeted therapy may impact that. So the question is that sequential may not always be optimal in that situation. And so when we look at this and say, ‘Well, what if we put them together? What if we put the chemotherapy together with this?’.

Dr. Scott Kopetz 2:42
If you’re not used to looking at these mouse model graphs, what you’re looking for are tumors that are shrinking, going below the lines. And here you can see in the blue, these are the lowest, the best, and the combination of the targeted therapy and chemotherapy may actually induce more activity. So some of the conceptual rationale behind the BREAKWATER study: This is a large international phase III study that’s ongoing, and I’ll show you some of the data from the safety lead-in which was just ensuring, as we thought, that this would be safe to combine chemo, either FOLFOX or FOLFIRI, with the encorafinib and cetuximab. The ongoing study from phase III has three arms currently as you can see here. We don’t have any results from that, so nothing I can share yet on the randomized portion. Well, I’ll share some of the really promising data on this safety lead-in. First we should reflect and remember that chemotherapy alone in first-line gives us about a 40% response rate, the targeted therapy about a 20% in the later lines. And so we’re looking at some of these response rates, now the combination and seeing in first-line now 68/75% of the patients are having their tumors shrink down by more than half in volume. And even in second-line, where we expect maybe a 10% activity of the chemotherapy, you can see really promising, 40 or so percent shrinkage. and that duration of response is really fairly long. So remembering that with encorafenib-cetuximab we’re seeing duration of responses in under six months or so, we seem going much higher. The other way we can look at it is these progression-free survival curves where we’re seeing PFS’s that are really promising here, even in second-line, where medium PFS is somewhere in that four to six months with our current standard of care now, these small cohorts see really promising data. So, just acknowledging encouraging numbers, these are small cohorts, but I think giving us in the field a lot of enthusiasm that we’re going to see benefit with these combinations.

Dr. Scott Kopetz 2:42
Alright, so let’s go back to this–what about the mechanisms of resistance? So, a little complex– throwing a lot of scientific terms out here, but you we can actually look and see what’s changing in the tumor. And the bottom line is that when tumors progress on chemotherapy or targeted therapy or the combination, they actually have a very different pattern. And you see a number of different changes that suggest that we’re constraining the potential mechanisms of resistance, and that when you give the cancer fewer opportunities to progress there are fewer solutions to the problem of how to grow it in this regimen, what we see is that means that the tumors have a longer period of disease control. So I think the biology is really suggesting that.

Dr. Scott Kopetz 2:42
Now, interestingly, if we look at not BRAF colorectal cancer tumors, but if we look at patients that don’t have a BRAF mutation or a RAS mutation, these are ones that would benefit from the EGFR inhibition alone. There’s some data that we presented just recently in 2 JCO papers that reflect on the fact that RAS mutations occur in 40 and 20% KRAS and NRAS of patients treated with an EGFR inhibitor alone, but when you combine that in first-line with chemotherapy, it turns out that less than 10% of patients develop one of these secondary alterations. So we’re going for more than 50% like we see in BEACON, acquiring these secondary alterations. Now, when we combine it with chemotherapy earlier on, you don’t see the tumors picking that mechanism of resistance of acquiring RAS mutations. So we don’t know, I think it’s going to be really interesting to find out, but the same could occur, right? Can the combined chemotherapy prevent some of these acquired RAS mutations? Now this kind of makes sense, if we recognize that RAS mutations actually don’t result in resistance to chemotherapy, right? So RAS mutations may be the easy way out for developing resistance to the BRAF, but when you’re giving a combination, the tumor has got to find a way to grow through the BRAF inhibitor and the EGFR inhibitor, and through the chemotherapy. And if the acquired RAS mutations doesn’t result in resistance to the cytotoxic chemotherapy. Well, that’s not a solution to the tumor to grow. It’s got to find a harder way an alternate way. So this conceptually makes sense, that we’re cutting off pathways of resistance that may occur. Now the other question that we’ve asked is, well, this combination chemotherapy, we know that at some point with oxaliplatin, we need to stop the oxaliplatin. We use these maintenance regimens. So how do we do that optimally?

Dr. Scott Kopetz 14:26
And and the mouse modeling at least, suggests, probably what we would think makes sense, which is, you can’t just do maintenance with encorafenib. You need both encorafenib and cetuximab, and then also that you may get some benefit by continuing some of that 5-FU alone with it, as we had been alluding to, resulting in some of the alternate mechanisms. So we really think that the maintenance regimens, and this is how it’s written in the study, should be like a 5FU, encorafinib, and cetuximab, once a patient has received a maximal amount of oxaliplatin.

Dr. Scott Kopetz 10:19
All right, so where else is the field going? I’ll share a little bit about some of the updates in the IO space here. And this is building on some nice data that MAPK pathway inhibition, can enhance some of the immune responses in BRAF patients. And so this is that actually, from Ryan Corcoran’s group, looking at – these are old studies that we have done in years past, looking at, in responding patients, it turns out that you see an evidence of immune infiltration. And when you look at paired biopsies from patients who were gracious enough to consent to those, you see this increase in these these T cells. So we know that even though there’s no immunotherapy given in these figures, that just the targeted therapy alone may drive an immune response. And so there was nice data for those interested, looking at a BRAF, MEK, PD-L1 that is in that prior publication, thinking about how do we build on encorafinib and cetuximab, a nice trial led by Van Morris in our group looking at this, saying, “Can you add a PD-1 on top of this, even in microsatellite stable?”, so a small study but encouraging 50% response rate, which favorably compares the 20% we’d expect with the encorafinib-cetuximab alone. And then increasing the durability of this, and I think really seeing some patients that are having amazing durability to their disease.

Dr. Scott Kopetz 16:43
So that is an ongoing randomized study that’s currently enrolling nationwide for patients in second or third-line to be randomized, encorafinib-cetuximab, with or without nivolumab. So two to one randomization, so every three people enrolled, two get the nivolumab and one with the encorafinib-cetuximab. I will mention as an aside that there’s some data suggest maybe the PD-1 can rescue resistance in some settings. So there is a study, or now a cohort, that’s open– encorafenib-cetuximab-nivolumab at our institution, even if patients that had prior encorafenib and cetuximab, there are openings there. So it’s an option to consider.

Dr. Scott Kopetz 1:11
The final study I’ll mention is the rare subset of patients that have MSI high, which is more immune-sensitive and a BRAF mutation. And this is a trial ongoing that’s randomizing an initial first line setting; Pembro or PD-1 with or without the encorafenib, cetuximab to try to again, show that synergy between immunotherapy and targeted therapy. All right, so with that, just to conclude, I think this group knows: BRAF mutations, poor prognosis. We should be testing for it. We should make sure that this is a known status and that combination strategies are certainly successful, the encorafenib-cetuximab’s, the current standard of care. But hopefully I convince you that there’s some good rationale, pre-clinically and preliminary data from our first 60 patients, of potential benefit when we combine chemotherapy with encorafenib-cetuximab, and that study is ongoing, the BREAKWATER study, but there’s really interesting biology suggesting that you may be influencing and constraining the mechanisms of resistance. So if we can really shut off some of those RAS mutations, for example, that would be a substantial benefit. A lot of other areas, I don’t have time to go through all of them, but just updating where we are with the PD-1 combination: There’s work going on in neoadjuvant in the UK and adjuvant settings here in the US, a number of novel combinations are ongoing, including – I’d highlight this really interesting data that came out of an unbiased screening study with BET inhibition which is a epigenetic modifier in BRAF-mutated colorectal cancer models that was presented at AACR this year, and there’s actually a trial through the NCI network that will be opening up here the next few months to test that in patients who’ve previously been treated with encorafenib and cetuximab. So with that, thanks, as always, for your time and interest.

Manju George 19:37
Thank you very much. So, I think I will ask the first question. For a newly diagnosed patient who is BRAF mutated, with all these trials available, what do you think – if they have access to all the trials, what would be the good sequence for them to enroll?

Dr. Scott Kopetz 20:01
I think if they have MSI-H tumor, about 20% of BRAF patients will, the SEAMARK study, the last one that I showed is a great one, thinking about, how do we combine immunotherapy and targeted therapy. In patients who have microsatellite stable, 80% of BRAF patients, those are ones that we really think the BREAKWATER study is a great one to participate in. I think it is really an exciting study. We really hope it will be beneficial there. After that, if after patients have been exposed to encorafenib and cetuximab in some way, again, thinking about, can immunotherapy rescue that, as Dr. Morris’ study here is exploring, but then thinking also about how these other novel therapies, deeper inhibition of MAP kinase pathway and others may play a role.

Manju George 21:01
So basically, you’re saying that – it’s really nice that, Dr. Morris’ study is now accepting patients with encorafenib and cetuximab, right? Because that was something that people were concerned about. And then the other thing is that, so you really believe that the combination plus chemo is better instead of waiting and then, having that separately and then getting on, say, for example, the Van Morris trial?

Dr. Scott Kopetz 21:27
Yeah, so the SWOG study. Right – and I think, and for patients that are maybe on the control arm, for example, of BREAKWATER, I think the SWOG study is a great one. I think your point’s a good one. Just participating in clinical trials is important, and not all trials will be available to all sites, but we really do think that these are some of the more compelling directions that the field could go.

Manju George 22:00
Annie has a question, “Have you seen responses in BRAF patients with peritoneal mets?”

Dr. Scott Kopetz 22:05
Hi Annie, great, great question, as always. So yes, we have. You know, peritoneal disease is sometimes hard to measure and so response rates kind of get a little murky. Without getting too detailed, peritoneal is a, kind of a strip more, kind of across a surface of a tumor. The way that the guidance is to measure tumors, is that you measure the longest dimension of the tumor. So if you think of a strip of cancer, you’ve got to kind of measure that the long dimension. So even if the tumor kind of shrinks down this way, it doesn’t really get reflected. So you will see lower response rates. But part of that’s a bit of a function, a little artificial, just how we quantify the responses, and so you don’t always appreciate the extent of that, but yes, we can see responses in that setting.

Manju George 23:07
OK. I have a question about the schema of BREAKWATER. It seems that they have many cohorts, some of them, I think the main studies, like FOLFIRI plus encorafenib, plus cetuximab, and then they have an additional cohort, like a side one cohort D or something, where they are combining with FOLFOX. And then I also heard that there is some kind of prioritization that patients would be first enrolled into the encorafenib plus cetuximab arm. So, these are some of the questions that patients have, if I’m a newly diagnosed patient and I’m considering BREAKWATER, what are my chances of getting into each of these arms? Because, for example, if I’m just going to get into encorafenib plus cetuximab and I won’t get into a combination arm, then patients are thinking whether that’s a good strategy for them first, to get exposed to it, because then you can’t get on, it shouldn’t narrow down the options that are available to them later.

Dr. Scott Kopetz 24:01
Yeah, right. Yeah, it is. And I think it is important things to understand; So a little clarification: There are some amendments coming to BREAKWATER, really to focus that down a little bit more. And what we’re seeing is that the FOLFIRI component will be evaluated in a bit of a later point, and won’t be part of the initial randomization. So it’s still going to be a FOLFOX based chemotherapy backbone. Just to say, there are some changes coming that will make it a little more condensed and I think a little more patient friendly. Because I think the arms that we really are interested in is, how much does the combination of chemotherapy and targeted therapy compare to what right now is considered the standard of care, which is the chemotherapy alone. So that’s the main question. And I think the goal of really trying to get to that question as soon as possible.

Manju George 25:08
Okay, okay… okay – we will see if there are other questions. I think Annie had maybe one more.

Dr. Scott Kopetz 25:15
Oh yeah, how full SWOG 2107 is right? So, yeah, it’s enrolling. There’s still openings. And I suspect at least over the next six months or so, we’ll have openings there as well.

Manju George 25:33
Then she’s asking about class two and class three mutations.

Dr. Scott Kopetz 25:37
Yeah, great. Yeah, the class two and class three. So class one, is the BRAF V600E. The other mutations in BRAFget separated out into two different classes of therapies. There were some low levels of activity that were presented with a number of different trials. It was a little heterogeneous across many different kinds of settings. Not a great home run evidence of activity in colorectal cancer there. So I’m not sure we have a great solution to those yet, but the rationale is still there. I think part of the problem is that these are very heterogeneous, like not all class twos behave the same, not all class threes behave the same. So it is a little hard to sort out, and they are a bit rare, but we’re learning. We’re making progress. There’s hints of activity, but not any amazing responses yet.

Manju George 26:45
There’s a question from Katie, are you able to get into the BREAKWATER trial, as a second line of treatment?

Dr. Scott Kopetz 26:52
So not into the BREAKWATER. Even though I showed some data from the safety lead-in that included second-line patients, that was just in the safety lead-in. Right now, in the randomized phase III portion it’s patients that are previously untreated that are entering. So the second-line would be more the SWOG 2107 study, enco-cetux with or without PD-1.

Manju George 27:18
Yeah, I think Annie has a question. We had a few patients on the BREAKWATER trial, what is the best next treatment? I think you had mentioned some in your talk, right?

Dr. Scott Kopetz 27:26
Yeah, good question. If they were on the chemotherapy arm, they could then go over to the SWOG study, for example. If they were on the encorafenib-cetuximab, or the combination arm with chemotherapy and encorafenib-cetuximab, then, at that point, you’re right thinking about, if they were just on encorafenib-cetuximab, you could certainly think about chemotherapy at that point. Or, like mentioned, there are clinical trials ongoing in that setting to try to explore.

Manju George 27:27
With the safety lead-in, there were some differences in results with FOLFOX and FOLFIRI, right? So, I’ve heard some people ask, with FOLFIRI, there were some interactions, and the drug availability was less… or something. And then the main randomized portion of the trial is now with FOLFOX, but then the long term data show that FOLFIRI as acombination has been better, right?

Dr. Scott Kopetz 28:35
Yeah, so, we don’t really know for sure, I think it’s fair to say. I hate to make too much out of these cohorts of 10 or 15 patients and try to combine in one or the other way. So I think I would be a little more cautious there. There’s a little bit of a PK interaction as I was mentioning, so you don’t get the same exposure to the drugs as you would normally. But not sure that’s playing a big deal based on the results that we’re seeing. Like you said, it was certainly encouraging. So I think that the data really suggests that there’s substantial benefit with the FOLFOX out of the safety lead-in so I’ve been very comfortable in recommending that to the patients. I don’t think we’re missing an opportunity necessarily, on the right partner.

Manju George 29:31
Okay, okay. And then once they finish the chemo plus the Encorafenib+Cetuximab potion, then are you thinking that, say for example, if they don’t have access, we have many – because BREAKWATER is open worldwide, we are fortunate to have the SWOG 2107 right? But many other countries, they don’t. The the idea of combining encorafenib plus cetuximab with nivolumab isn’t that common. So do you think that in that case, they can get LONSURF+bev, or once they progress on the trial, what options could they consider?

Dr. Scott Kopetz 30:08
Right, yeah, so, there’s always the alternate side of toxic regimens that may make a difference. LONSURF+bev I think certainly is reasonable as well. So we do, you’re right, just kind of lean back on what kind of works in general, in colorectal cancer.

Manju George 30:23
Okay, and then, when you look at the resistance mutations, there are so many met amplifications and things like that. Do you think STIVARGA (regorafenib) has worked for people? I’ve seen that some people prefer to use STIVARGA when they get progression on encorafenib plus cetuximab. So what is your personal —

Dr. Scott Kopetz 30:44
–Yeah – we don’t – It’s not great data on that, necessarily. I think it’s a reasonable option, but I don’t know that it’s not something we’ve seen pan out in our preclinical studies, that we’re driving towards a more sensitive phenotype to regorafenib, but certainly a reasonable option.

Dr. Scott Kopetz 31:05
Okay. Were there any learnings from ANCHOR CRC trial regarding PFS or OS to those without peritoneal mets?

Dr. Scott Kopetz 31:14
Yeah, so ANCHOR was a study looking at the encorafenib plus cetuximab plus a MEK inhibitor, and that was running in parallel with BEACON, and we learned from BEACON that the MEK was adding more toxicity, not adding as much benefit. So it’s a little harder to extrapolate some of the ANCHOR data otherwise, but I think what we recognized is that the PFS was kind of in the same range as what we’d expect with the chemotherapy alone and the OS, likewise, looked encouraging, but it was non-randomized for the OS, which makes it hard to interpret. So, the breakdown by with/without, peritoneal metastasis is not really well laid out.

Manju George 32:00
Okay. And then could you say something more about that BET inhibitor trial?

Dr. Scott Kopetz 32:11
Sure. So, this is through an unbiased screen where we asked, ‘if you have a patient or a tumor on encorafenib-cetuximanb, and we screen 1000s of different nodes for ways to modify and we find a node that really tends to be a vulnerability of the cancer, and that turns out to be a bromodomain, which is a regulator ofgene expression. And so there is actually an inhibitor of bromodomain, so we were able to then show the benefits there and bring that together into a clinical trial. So there’s a bromodomain inhibitor plus encorafenib and cetuximab. What it’s doing is, really for those aficionados, is deeper inhibition of the MAP kinase, as well as shutting down MYC signaling, which is a key survival mechanism. So it’s a really way to inhibit MYC, which is one of the key oncogenes.

Manju George 33:09
Okay, I think it’s sort of hard to get the word out to BRAF folks about this trial. Has enrollment been fairly brisk at NCI centers and academic centers worldwide?

Dr. Scott Kopetz 33:22
Uh, let’s see. So I’m not sure which trial?

Manju George 33:27
I think BREAKWATER.

Dr. Scott Kopetz 33:28
Oh, BREAKWATER, yes, it is. It’s going, you know, first-line studies are a little harder, because a lot of times we don’t always know the BRAF status by the time that patients start treatment. So it’s not quite as fast as BEACON but it’s going reasonably well. We’ll get it done. Not always as fast as we like, but we’ll get it done. And I think we’re kind of on track on projections at the moment.

Manju George 33:57
Yeah, yeah. I think that we are working with Pfizer to get, in COLONTOWN University, we are going to be having a featured trial, we’re doing that for BREAKWATER. So my other question would be, since you have those mouse lines that seemed very interesting, where you’re doing sequential treatment and testing, what kind of resistance develops. Are you also doing experiments where you’re doing the encorafenib plus cetuximab plus FOLFOX and seeing what else you can give those mice?

Dr. Scott Kopetz 34:25
Right, so, we haven’t pursued that. I think it’s an interesting area to say, ‘how do you even improve upon where the BREAKWATER is going to be’, right? But no, we haven’t started that type of work yet. But I like the way you’re thinking, let’s take a step ahead.

Manju George 34:44
Yeah, because I’m sure that in a year or two, then you’ll have lots of enrollment, and then people are going to be asking, ‘what next?’.

Dr. Scott Kopetz 34:53
So that’s right, – have something ready – because that’s right… we’re looking for good post docs to do that. If anyone knows of some good post docs out there, let us know.

Manju George 35:02
Okay, okay, yeah. So Annie says it was great to see that there was an epithelial to mesenchymal transition in preclinical research. Is that showing up in BREAKWATER patients too?

Dr. Scott Kopetz 35:15
Good question. We don’t know. You know, we don’t have progression biopsies on patients on BREAKWATER, orany biopsies, for that matter. So as phase III, they tend to not have that same degree of translational research. So we’ll have blood, but we can’t always assess some of these transition states, like you mentioned Annie, in some of the samples that we’re collecting. So we’re going to rely on other ancillary, smaller phase II studies or preclinical models.

Manju George 35:48
Okay, I think we have gone through this really fast.

Dr. Scott Kopetz 35:53
Wonderful. Yeah, no, that’s great. Well, thanks so much to everyone for the time and interest and happy to answer any other questions that come up offline.

Manju George 36:03
Thank you so much.

Dr. Scott Kopetz 36:06
Thanks.

Manju George 36:07
Bye

Dr. Scott Kopetz 36:08
Bye bye.

DocTalk
2022
Dr. Tie
ctDNA
Stage II
Trials

In this DocTalk recorded August 2022, Dr. Jeanne Tie from The Walter & Eliza Hall Institute of Medical Research in Australia discusses her ctDNA DYNAMIC II trial with PALTOWN Scientific Director, Dr. Manju George.

Table of contents

00:00: Introduction
04:29: Minimal residual disease (MRD)
06:06: Duke’s staging
07:11: AJCC TNM staging
07:50: Adjuvant treatment for early-stage CRC & challenges
08:53: Things tried in stage II Colon cancer
11:00: Better risk stratification in stage II colon cancer
11:59: Clinical dilemma in stage II colon cancer
13:50: Other challenges
15:55: How to move the field forward?
16:30: Circulating tumor DNA, what is it?
18:12: CtDNA detects MRD
19:19: CtDNA dynamic reflects tumor burden in CRC
20:04: Post-op ctDNA detection and what it means
23:29: CtDNA dynamics — Real-time monitoring & its value
25:18: Serial ctDNA — What info does it provide about adjuvant chemo?
26:35: GALAXY trial results: Role of adjuvant chemo?
27:50: The DYNAMIC II trial
30:00: DYNAMIC II — CtDNA assay used
31:02: DYNAMIC II — Main study results
31:35: DYNAMIC II — Additional results
32:25: DYNAMIC II — Summary
35:00: DYNAMIC III — Design
36:19: Post-treatment ctDNA, role?
37:25: Trials for CtDNA positivity after Adj treatment
40:00: Q & A

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Categories
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New treatment strategies for MSS CRC

New treatment strategies for MSS CRC

DocTalk
2021
Dr. Parikh
ctDNA
MSS

Dr. Aparna Parikh  of Mass General discusses “Strategies for Making Cold Tumors Hot.” “Cold” tumors do not respond to immunotherapy. This DocTalk was recorded in the fall of 2021 with PALTOWN Scientific Director Dr. Manju George.

Dr. George  0:00
Hello everyone. I’m Dr Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports Colontown. We are very happy to have Dr Aparna Parikh with us, and she’s going to talk about colorectal cancer strategies to make cold tumors hot. And just a little brief introduction about Dr Parikh. She completed her MD from the Indiana University School of Medicine, residency from Mass General, and fellowship at UCSF. She’s board certified in internal medicine as well as medical oncology, and she has a lot of nice papers, the most recent one is in Nature Cancer on radiation therapy and immunotherapy. And we are really excited to have you here with us. Take it away.

Dr. Parikh 0:13
Great. Thank you so much, Manju for inviting me. I want to just thank Manju tremendously for her incredible collaboration with a lot of our work that we’re working on kind of pan- stages of colorectal cancer, and I’ve gotten to know her through our Stand Up to Cancer Colon Dream Team and her advocacy and voice in our adjuvant study. So, you know, there’s lots of different areas where I sort of thought we could talk about today, but in light of our recent paper and some work that our disease group is working on, I wanted to share some of the strategies that we’re looking at in the metastatic setting to make some of these cold tumors hot, in colon cancer, but as well as other GI cancers. But I’m hoping today that we will leave ample time for discussion, and I know Manju had asked me to just briefly also comment on the status of our stage III CtDNA trial, as well as the study that our group is doing, this being led by Ryan Corcoran in the BRAF setting. So I will go through this deck, and we’ll have some questions, and then I’ll give some brief updates, and then we can close with a Q&A which I think would be very much welcome to me as well.

Dr. Parikh  2:06  
So I do apologize if some of you attended AACR, because this is somewhat of a repetition of the talk that I gave there, but I hope we’ll be able to spend a little bit more time in terms of our next steps from these first generation of trials in the setting. So here are my disclosures, and as part of this, I do need to mention that I am discussing Investigational Use of ipi and nivo as well as 3TC in colorectal cancer.

Dr. Parikh  2:39  
So this is a slide that won’t be new at all for this audience, but it’s one of my favorite slides, just in showing the gains that we have had from the 80s. But you know, except for biomarkers, subtypes, really, since 2014 with the pivotal 80405, first line study for the RAS wild type patients haven’t really seen a slope increase where we need it to be, in terms of where we are in 2021 and arriving on 2022 soon. I think it’s always helpful to put in context where our median OSs are for the latest non-biomarker, selected drugs such as rego and lonsurf, where rego was FDA approved first in 2012 and subsequently lonsurf in 2015…

Dr. Parikh  3:33  
Dr. Parikh: …where we see median OS is still less than two months. And except for these biomarkers, which I’m not diminishing the role of these biomarkers, because in summation, these biomarkers do add up. And a lot of exciting work obviously happening in the BRAFV600E and other activating non V600E alterations, The tremendous gains that we’ve seen in MSI disease over the last several years, the HER2, and the trastuzumab deruxtecan data, as well as several other small molecule inhibitors and TKIs for the HER2 setting, and then rapidly evolving G12C, plus, you know, D, V and others in that space too. So not diminishing the importance of predictive biomarkers and the great strides we’re making in those particular settings, but I think it’s really humbling to look at the rego and lonsurf data and put that in context of where we need to go.

Dr. Parikh  4:41  
Personally, if we’re sort of having a DocTalk, I don’t even really use rego, I do use lonsurf, if we don’t have a good trial option because we do see patients, with no great biomarker of who those patients are. But do have patients that do derive benefit for quite some period of time, but in now, kind of seven years sort of being an attending, just with Rego, haven’t seen anything. And as you all know, toxicity is tough. But I do use lonsurf.

Dr. Parikh  5:13  
So this, again, for this audience, isn’t going to be news to any of you, but I think it just goes to show that the PD-1 story in colon cancer has actually been around for some time, as far back as 2010 where we have tried to use PD-1 therapy without efficacy. So if you look at sort of summary of the numerators and denominators, very humbling numerators with a non trivial number in the denominator in terms of MSS patients that were treated with checkpoint inhibition. I think just for time, I’m going to skip over the MSI data, because you guys all know the keynote 177 data, but again, noting which many of us are paying close attention to, including approaches such as using CtDNA in the setting to try to really understand who these patients are that are dropping off early. So when you look at the keynote 177 data, the thing that I always like to point out is in the pembro group that you had a 30% non response rate. And so even for these patients, even though we have made tremendous headway with the MSI patients in pembro, nivo, nivo/ ipi, what are the biomarkers that are predicting lack of response here? And can tools such as CtDNA be used as a guide to predict who those non responders are going to be and potentially salvage an opportunity to switch to chemo sooner rather than later for those patients?

Dr. Parikh  7:01  
So this cancer immunotherapy cycle is, again, not a figure that’s new to the field, and was kind of a figure that initially came out of Ira Mellman and colleagues, but really shows us at the cellular level, what the problem is with these cold tumors and the various checkpoints and opportunities we have to try to engage tumoral responses. So some of the things that we’re going to be talking about too, is not only where we’re looking at removing the brakes of the checkpoint inhibitors, but I think a lot of interest in the TGF beta, the CMS4 colon cancers too, and how we can really help with infiltration into tumors, both enhancing the chemotherapy response, but protect potentially, other signaling pathways such as TGF beta to try to hinder TGF beta signaling and allow for immune trafficking, but also efficacy of chemotherapy. And then what we’re trying to do with some of our approaches here, are there ways for us to kind of stimulate antigen presentation and basically stimulate an in-situ vaccine response to try to get these tumors from here over to the left to the right side of this diagram.

Dr. Parikh 8:32  
So we at MGH have a very radiation heavy group, kind of a phenomenal group of radoncs, led by Ted Hong, who is the NRG chair. And because of that, we entirely recognize that, not only in colon cancer, but rectal cancer, pancreatic cancer, we’re a very radiation bias  sort of group. And do a lot of trials and work, to try to exploit radiation as a tool. And some of this work actually came from the Penn group initially, and the men and colleagues now several years ago, that showed that using radiation and dual checkpoint inhibition may actually activate non-redundant immune mechanisms. We’ve seen several other studies in other tumor types, such as lung cancer, GU cancers as well, showing that low dose radiotherapy may actually help your tumor presentation and prevent the resistance to immunotherapy that is happening. It is very controversial what the right dose of radiation is and whether one time radiation is sufficient or not. I actually think that you may need to give subsequent doses to create that T cell repertoire and  then maintain that T cell response over time, and maybe a one time or a couple dose of radiation isn’t going to be sufficient. But if you look here, with the Minn paper, here, with the preclinical data, looking at the control in the gray here, but combining the control with RT and CTLA4 and RT again responses here in the preclinical colon cell lines. So based on some of that work, and they used sort of an 8 gray times three fractionation schedule, and that’s what we ended up ultimately taking into the clinic.

Dr. Parikh  10:39  
So it’s complex, I think it’s one of these things that we’re really trying to understand what is happening. But we do know that it does seem that radiation is helping promote T cell infiltration, antigen presentation and shaping your T cell repertoire. We see that the responses that are happening to radiation seems to be happening in an interferon dependent manner, so really activating the innate immune response and not just sort of adaptive immunity. There is some evidence, preclinically, that there is actually through the kind of cellular processes and turn around that are happening with the low dose radiation, we’re not exhausting your T cells or burning them out, that you are releasing tumor specific antigens, and with those tumor specific antigens, mounting a direct T cell response to that. And we know actually that RT activates dendritic cells as well. And one of our lab collaborators who works in Nir Hacohen’s labs, Arnav Mehta, is really trying to look at some strategies using TLR9 and others to right now in pancreatic cancer, is where he has funding to try to look at dendritic cell activation with kind of TLR anti- agonist and RT. We know that anti CTLA4 promotes the expansion of T cells, inhibits TREGs and effectively increasing your CD8/ TREG ratio, and that PDL-1 blockade may actually reverse your T cell exhaustion and help mitigate that depression in your CD8 to TREG ratio further. Again, the idea being that we’re trying to get an oligoclonal T cell response here, even though we are going to be getting polyclonal responses. Really, the idea here is, is there a way to figure out a way to get that oligoclonal T cell expansion and response, and then help subsequently, with your T cell infiltration. And can we use these combination approaches to really kind of harness what radiation is able to do? 

Dr. Parikh  12:53  
So, given this, we embarked on a trial. It was a single institution trial funded by BMS, with correlatives supported by Stand Up to Cancer for the colon component. It was a trial that combined colon cancer, pancreatic cancer, as well as MSI disease. We haven’t completed the MSI cohort yet, but did complete the MSS, CRC and pancreatic cohorts. And what we did here is we gave Nivo and IPI at cycle one, day one. And then cycle two, six weeks later, we gave Nivo and IPI again, and we gave 8 gray X 3 to a single lesion that was radiated.

Dr. Parikh  13:44  
And what’s important to note here is that the lesion we radiated was not the lesion that was measured. We are pulling the data to look at the radiated lesion response, but currently what we reported and what the end point of study was to look at response outside of the radiated field. And then we continued Nivo and IPI after that initial 8 gray X 3 to a single lesion beyond that initial treatment. So here were the consort diagrams for both cohorts. For colon, we had 40 patients.

Dr. Parikh  14:24  
I do think it’s important to note from both cohorts we had around a 30% drop off from the start of Ipi+ Nivo to radiation. And so I’ll show you the data for both the all-comer population here, sort of the Intent To Treat, but actually what we call the modified Intent To Treat. So the response of people that actually went on to receive radiation. And what you can see the reasons for discontinuation, toxicity was a few, I think, keeping in mind that when we started to study in like 2016, 2017, IPI and Nivo were still relatively new to the GI space, so we were sort of figuring out how to manage the colitis and others, where we have made a lot of headway in the recent years  within the GI community, how to handle those side effects. But we were still learning how to safely give these drugs at that time. We had nine other patients that had PD (progressive disease). This is a heavily pre treated patient population, so unfortunately, by the time you register the patient and actually start treatment, we had nine patients that dropped off, and ultimately weren’t able to get to radiation.

Dr. Parikh  15:43  
So when you look at the per protocol analysis, these were people that actually ended up getting radiation, so not the all-comer, we see a disease control rate of nearly 40% and an objective response rate of 15%. And what I want to call attention to is the duration of responses in the patients that were deriving benefit. So if you look here at the CRs (complete response) and PRs (partial response) as well as the stable disease patients, and we didn’t put this figure in the paper, but we actually did map out the previous lines of therapy for these patients and how long they were on their last previous line. And I think what was notable to us was that for a number of these patients, the duration of treatment is exceeding a year.

Dr. Parikh  16:35  
And we don’t think that was just sort of biologically selecting patients, because again, when we looked at the previous line of therapy for those patients, it wasn’t quite nearly a year by any means. There was only one patient that had lung only Mets. She wasn’t a PR patient, but she was a stable disease patient, and so sort of lower volume lung only disease that her biology was clearly favorable. But besides her, we don’t think that this was sort of a fluke in terms of biologically selecting favorable patients.

Dr. Parikh  17:15  
All right. So here is just one example of the out of field responses. So this was a patient that I shared with Ted, and we did not pre-specify in the protocol what needed to be radiated. So Ted Hong or his colleague Jen Woo, would sort of pick if there was a lesion that was needed for symptom control or palliation, often would pick that region or another region that was amenable to biopsy, because we had to do a lot of correlatives here. And here what you can see for this particular patient, he radiated the liver. And what you can see here is a really nice response in the lung metastases. So these are the same cuts, and you see improvement, here of this lesion and actually disappearing of some of the other lung nodules that we saw.

Dr. Parikh  18:09  
When we look at the Kaplan Meier curves, just for, I put the PDAC (pancreatic ductal adenocarcinoma) just for reference here, but when you look at the PFS and OS for the patients that actually went on to benefit or not, 5.2 versus 2.4 months, and then the OS 20.9 months versus 7.7 months for patients that were not deriving benefit.

Dr. Parikh  18:36  
One of the questions–this actually we hadn’t done initially– because we sort of assumed it was fine, just based on this and then the reviewers actually asked us to go back and look at TMB, which we did, and not surprisingly, these were all low TMB patients, so TMB albeit controversial, and colorectal cancer was certainly not the reason that was driving this change. We had 41 samples, or we had paired germline and DNA, 17 patients that were actually analyzable with the radiation. There was really no change in TMB before, during after treatment. Profiling is what you would sort of expect–KRAS, P53, APC alterations. We did note, interestingly, some change in sort of DNA damage response genes, but again, numbers are really small, so hard to really draw a lot of conclusions around kind of any DDR signatures as well. But what was interesting is, you know, when we started to look at what was coming out, and sort of the bulk RNA Seq, and one of the other kind of changes that we were seeing is David Ting, who did a lot of the correlative work for this, was noticing that in the responders, they seem to be enriched in these, again, interferon signature response genes. So signifying again, that we’re something is happening with kind of the innate immune system, and perhaps that these patients that were going on to respond were somehow primed to respond to this approach. And what we’re really trying to figure out is, is there a way for us to figure out how can we make more patients sort of primed for this approach? And are there any ways? And I’ll show you what some of those ways are to try to exploit this vulnerability for patients.  We saw some change in antigen presentation, as well as kind of T cell recruitment signatures before and after radiation. And then we saw this differential expression of these non coding RNA repeats and all the biopsies from the responders to non responders, particularly one repeat, which is called HERV-K. And I’ll tell you a little bit about what these repeats are and in the subsequent slide or two.

Dr. Parikh  21:12  
So like I mentioned, HERV-K was one thing that came out, but also LINE-1, which is another repeat. And they’re actually kind of ISH (in-situ hybridization) assays that are easy to do to ascertain HERV-K and LINE-1 status. And again, we saw this, and what we have learned in other cancers, actually urothelial cancer, there was a great paper that I put in reference here, and I can make sure Manju has these slides, that basically showed that HERV-K was associated with response to urothelial cancer, and HERV-K sssociation, or HERV-K is actually been associated with NK (natural Killer) activation. So maybe there’s something with these non coding repeat elements that are actually the ones that are driving these tumors to be primed for responding. Our hypothesis is, and what we’re trying to really understand is, is there a way to exploit these repeats further?

Dr. Parikh  22:09  
So what we saw was that this strategy of CTLA-4 and PD-1 did show some activity in a subset of patients. I’ll show you the schema for our trial that we will have our last patient on this week and have finished this next MSS trial to kind of confirm the signals, and with this next trial, we tried to mitigate some of that toxicity fallout.  But also Nir Hercohen and others have done work that’s showing that perhaps  PD-1 blockade prior to the antigen priming, may paradoxically lead to T cell exhaustion. So independent of toxicity if we expose to the checkpoint inhibition early. can we help with the responses and obviously the ongoing biomarker work that we’re doing.

Dr. Parikh  23:13  
So this was the study that is 30 patients, and patient 30 will come on this week, where we did the exact same thing, 8 gray X 3 (RT), but moved Nivo and ipi up to cycle one day one. And then actually are only continuing with four cycles of IPI, just based on other tumor types, the data that maybe you don’t need the IPI long term.

Dr. Parikh  23:41  
So we’re seeing, it’s too early, we haven’t yet looked at the data. I’m treating a lot of these patients, and so we are seeing some benefit. I don’t think it’s going to be where we would like to be in terms of 40% response rates, but I do think I mean, I know we’re seeing some patients benefiting, and we’ll see what those numbers look like. And now we’re really trying to figure out what our path forward is here, and are there better ways to get more to respond? Or will BMS support a larger study with this approach? Because, as you all know, if you’re in that 20% of patients that you’re driving benefit for a while that’s real and meaningful, and it’s our job now to kind of figure out with biopharma how to support this.

Dr. Parikh  24:34  
So we’re doing a lot of  correlative work with this too. We’re looking at ctDNA. We’re doing single cell RNA sequencing. And the way I like to sort of think about some of these immuno oncology correlatives is it’s the single cell approach is to really understand what is in the tumor so, what is the composition of, NK, CD8s, dendritic cells. And then what’s important is not only in understanding what, but using some of these multiplex approaches to understand where are these different cellular components located, to try to understand what’s what, to try to help us understand what’s happening.

Dr. Parikh  25:15  
So then going back to the repeats. So this was something that also actually came from David Tings lab, and when he was in the cancer center director Daniel Havers lab, as a postdoc, long time ago now, and they started to identify, as well, some other groups these, what it’s being called as the repeatome, and it’s an unexplored facet of the genome. Which, when I first met with, the backstory is, I showed up at MGH, almost six years ago too, and David Ting and I met, and he was like, Hey, we found this stuff. It’s constituting 50% up to 70% of the genome, and we don’t think it’s just junk. And he showed me some data that he had in colon cancer, and we started to put our heads together kind of digging through the data and the repeat landscape. And was there a way for us to try to think about how to harness these repeats, which, interestingly, these repeats we see in embryogenesis, and you see really high levels of these. And then it seems to be pretty quiescent until expression, again, in cancer pathogenesis, but also in aging and autoimmune disease. So there’s something going on. And I think  from a very simplistic standpoint, it makes a lot of sense, like, why would something be there? And it must have some purpose. And if they’re suppressed, they don’t cause problems. But if they are not suppressed, it can lead to problems such as epithelial malignancies.

Dr. Parikh  27:05  
And so this is just to show you that these repeats have actually been around for some time and act like endogenous retroviruses and actually have their own reverse transcriptase (RT). But only in the last few years, are we seeing this, not only in GI cancers, but a lot of other malignancies, in terms of the role of these and how they may actually stimulate immune responses. We know that they represent in the genome, like viruses, they have an RT (reverse transcriptase) so different things like methylation can actually help derepress them. And then you can have this RT that we think helps them reintegrate and expand into the genome.

Dr. Parikh  27:55  
And this is sort of a nice diagram of the RNA to the RNA/DNA. And rdDNA constructs there, and how they eventually are reintegrated and expanded. And can we use something like an RTI (Reverse Transcriptase Inhibitor) to prevent this reintegration and then expansion? This was a Nature Genetics paper, a couple years ago that looked at these repeats and several different malignancies. And Interestingly, esophageal cancer is one of the higher ones, but you see here, colon cancer is another cancer where these repeats seem to be differentially expressed. And like I mentioned, is that we think that these RNA repeats are actually triggering an innate immune response. And with these repeats, we see a lot of these inflammatory cytokines go up. And what you can see here with HSET- 2, which is one of these repeats, you can see a difference here between  TNF, IL-6, expression, IL-12. So seems to be something happening with these and interferon responses.

Dr. Parikh  29:11  
This was a JCI paper. David Ting was a collaborator on this, as well as from Bersani and colleagues a few years ago, looking at these NRTIs. So using 3TC, for example, and to inhibit these tumor spheres of  p53 mutant colon cancer. I won’t go into some of the details of how TP 53 is repressing these repeats, but we do think that actually, these repeats tend to be linked to TP 53 expression. So if you see here, this is LINE-1 in the green. And if you look at TP53 Colon cancer versus wild type colon cancers, the TP53 mutant seem to be enriched in these repeats as well.

Dr. Parikh  29:55  
So David Tang sort of treated some mouse xenografts with 3TC, and you can look here in pretty standard colon cancer xenografts, here in cell lines, looking at what’s happening in TP 53, mutant tumors, as well as wild type tumors. In HCT 116, cell line versus the xenograft what is happening with 3TC and tumor growth here? So showing some activity of this in the mutant patients, but not in wild type.

Dr. Parikh  30:37  
So this led us to write a small grant that was funded by a foundation. You can imagine, it’s really hard to get these funded because biopharma, there’s not a clear R and D sort of path for these. So we tried lots of different avenues, and ultimately, a foundation, the Gateway Foundation, funded this trial, and it was a small study with 3TC alone. And we didn’t really think that 3TC alone was going to, I think we know even going forward, that we’re going to need to look at combination approaches, but we wanted to make this sort of a biomarker driven trial and see that with 3TC alone and doing biopsies, are we actually hitting the target here and engaging these repeats. And so we did the trial. We started initially at the HIV dosing, which is our hepatitis dosing too, which is 300 milligrams daily, and we ended up going up to 1200 milligrams daily. And this was actually based on the initial HIV data, where there were no DLTs at the 1200 but given the efficacy they saw in the  viral space, around 300 that’s what ultimately was approved.

Dr. Parikh  31:56  
And so we had nine patients that were enrolled at 300 and then we went up to 23 more patients with the higher dosing. Really no significant side effects, some fatigue. Hard to sort out was that cancer versus drug, and we had eight out of 32 patients that had disease control and one out of 32 patients that had a mixed response, that one person the mixed response did not meet RECIST criteria for response, but had a really nice CEA  decline, and then had some tumors that were actually regressing, and then others that were growing, but the CEA overall was coming down. So that’s this patient here with the CEA response, and you can see a little bit of CEA response there, and some stability, at least here.

Dr. Parikh  32:47  
And when we looked at the patients that were deriving benefits, again, what we saw was that in the responders versus non responders, the same thing this LINE1 protein which is another, it’s a another one of the proteins that is expressed or formed by these repeats, sort of the LINE-1 leads to LINE-1 protein. And we looked at line one status, and again, looks like differentially expressed in patients that were benefiting versus not. So that study is we are under revisions right now for publication and trying to figure out our path forward with both of these approaches. And I hope we can all continue to work together as a community, because these are hard studies for biopharma to support. But  we’re looking at other options to try to get some of these concepts through, and our priority options for even when we get patients that are interested in supporting trials and things too. So we’re looking at options with 3TC and RT, based on the initial data that I showed you from our RT study. If you use epigenetic drugs and preclinical data, you may be able to get these repeats expressed. They seem to be linked to DNA damage and DNA damage response and as a kind of repair mechanism for double stranded DNA breaks. And so we have brokered some pre clinical contracts with David Ting to look at some of the DNA damage drugs out there, but are really working hard to try to figure out how to exploit these and get patients access to some of these combination strategies.

Dr. Parikh  34:49  
So with that, I think I went a little bit over what I wanted to with the 30 minutes, but wanted to share with you all some of the things that we are working on and where we are headed. So maybe I’ll pause for questions, and I can give you kind of brief non slide updates on the BRAF study as well as the CtDNA studies. Does that sound okay?

Dr George:
Yeah, that sounds good. This is really exciting. Thank you. Dr Parikh, so we have some general questions, so maybe we can go through them quickly, what is the rationale and risk benefit for triplet chemo, like FOLFOXIRI,  in the first line versus sequential doublets?

Dr. Parikh
Yeah. So I think there is a lot of institutional bias around this. And in general, I think taking a step back, of triplet versus doublet as well as I think maintenance versus holidays is a big discussion that I think a lot of people sort of split our hairs around in trying to understand. I do think when you can give FOLFOXIRI safely, I do think that there is, it’s truly synergistic, right? It’s not just additive. And so I do think that there is a survival benefit. And I sort of believe the TRIBE 2 and studies that for patients, and we’ve seen this with pancreatic cancer and others. And, in cholangio, there was a study that just looking at FOLFIRINOX and Gem/Cis, and didn’t show that FOLFIRINOX was better than Gem/Cis. So it’s not always just more is better. But for colon cancer, I think we do have compelling data to say that  in the right patient who we can get through FOLFOXIRI and in experienced hands with dose adjustments and things, you can get people through FOLFOXIRI probably with survival benefit. So I, I’m biased. We’re a pro FOLFIRINOX group, FOLFOXIRI group, have been for years, and so I do believe that there is a survival benefit, but I’m also, I don’t think, not surprisingly, treatment holidays lead to a detriment in PFS, but overall survival benefits are the same. And so I’m a firm believer in quality of life discussions with the patient and what their goals are, and don’t think that with the right patients you’re going to lose survival by both, doing maintenance. But I’m also a believer in good induction.

Dr. George  37:26  
I mean, what would you think, would you give it to a younger patient? I know that many of the  BRAF V 600E mutant patients, they get FOLFOXIRI in the beginning, right? So do you use some criteria to decide who are the patients that you will give FOLFOXIRI up front?

Dr. Parikh
Even older patients that have good performance status, I feel like performance status is in the eyes of the beholder, but we have given FOLFOXIRI or FOLFIRINOX to octogenarians of pancreatic cancer, and have gotten them through. So I’m not shy about it and recognizing that we may have to dose adjust and things along the way, but I think performance status to me more than age.

Dr. George  38:09  
Okay, And then the next question is about re challenging with say, FOLFOX or FOLFIRI for a patient later, like two or three years after they have had those. What do you think about that as part of a statement strategy? So it’s something that you follow? 

Dr. Parikh
Very much. So I think we have good enough benefit if  I think if data that have neuropathy and things are okay, that you can  regain response, particularly to the platinum. So even with FOLFOXIRI, I should mention, I’m not pushing through necessarily six months of FOLFOXIRI, sort of doing four months, get a response, then ,I tend to be pro-FOLFIRI, just because of the neuropathy issue and trying to save the platinum for later. So FOLFIRI Bev or anti EGFR, depending on sidedness and mutational status, and then, giving a holiday at some point in time, and then reintroducing later

Dr. George 39:12  
Okay. And then the next question is about, what are some of the conditions under which you decide to stop the chemo? And then consider local or regional treatments.

Dr. Parikh  39:25  
Yeah, so this is a good question, and it gets debated all the time, because as you may know, that, for example, liver directed therapy hasn’t been survival advantages there. But we are a site that I said for limited disease, depending on locations, particularly if a patient needs a break from chemotherapy, whether it’s toxicity or just fatigue, or is that a good response for some time, and we have shown that we’re not going to get behind. Have certainly used, sbrt to a dominant liver lesion. And as long as we think we have a good handle of lung, we do ablation for small volume liver lung Mets, for example. So it’s really about following the biology and making sure that the systemic disease isn’t going to get ahead of you. And if you feel like you have that window to stay on top of the systemic disease, but you can treat a dominant liver meth that may cause problems imminently, and prevent that from causing problems, in discussion with the patient, sort of understanding that we haven’t [had a lot of trial data] yet. There’s an NRG trial that’s looking at oligomet treatment and radiation and things, but I think we’re all starting to get a sense that oligomet sort of treatment was probably kind of beneficial. So our group, again, recognizing the biases of not a lot of survival data yet to support these, but in the right patients aren’t shy about like organ specific disease control approaches.

Dr. George
Okay, thank you very much for that. There’s one question about trials, but maybe we’ll go to that later. There are some questions in chat. So any insight on overcoming resistance to G12C inhibitors, or ideas on sequencing? Is there any news on if switching to a new G12C inhibitor after failing another one will work?

Dr Parikh
Yeah, I don’t think another G12C inhibitor in of itself, is going to work. I think we are seeing the differences between the G12C inhibitors and which ones are better versus others. But I think the kind of dual, triple pathway blockade approach with looking at better, I think there are better ERK inhibitors that are coming. ERAS is a company that I think has a really exciting ERK inhibitor. I think we’re still looking at some of the SHP2combination approaches. So I think it’s going to be combination strategies, because as far as we know, Dr. Corcorans Lab is doing a lot of work in this, but a lot of the resistance alterations that we’re seeing, and then what they saw in the New England Journal lung cancer paper, aren’t necessarily resistance alterations that are going to be able to be overcome with just another G12C inhibitor. So it’s sort of combination or downstream approaches too.

Dr George
Okay. The next question is, how do experts use CtDNA or NGS testing to know when to re challenge targeted treatments –like CETUX, Ras treatment, BRAF inhibitor, etc? Is it an estimate of how many months between treatment is needed for optimal possible results?

Dr Parikh
It’s a great, great question. And you’ll see people like Len Salz argue from CHRONOS that it’s only a 20% response rate. And the reEGFR inhibitor  challenge of person is really like cost effective and useful? So, I don’t think we really know. I think we do kind of have a timeline of what we would expect, the kind of resistant clones half life of a few months in terms of decaying and six to eight months seems to be that window. What I tend to do at the time of RE, when people are going on either holidays or something else, is I just get, kind of every two months  ctDNA test and see what is happening to those resistance clones.  And, I think what’s so challenging with even just up front  ctDNA testing, is does a small KRAS clone at 0.1%, does that actually portend resistance or not? And the dogma now is  of course, I guess KRAS is a resistance alteration and has detriment to anti EGFR therapy. But if you see that a RAS wild type tumor, and then you see this small clone, is that really clonal? Not clonal? Should you not give that patient anti EGFR therapy,  when you have a limited toolbox of things to try?  Same thing with HER2. I had a patient that had a RAS mutation, but I didn’t have a lot of things to try, but was really and I had a HER2 at 25 to one. Am I going to believe that small CtDNA result and not give them HER2 directed therapy? It’s hard not to, right, when you have an amplification that sort of at 25 to one. So that patient benefited. But again, the purists  would say, KRAS alteration came up, and that’s a known resistance mechanism. Those patients aren’t getting benefit. But you’re not necessarily looking at the fact that, again, that for that particular patient, you had a amplification, it was like at 25 to one, and clearly your driver event here, and that KRS was probably just a sub clone that overall, wasn’t going to hinder benefits. So ctDNA is a great tool, and I’m obviously biased, but it is a tool,and you have to sort of think about what you have in your tool box to care for the patient individually. And luckily for colon cancer, sometimes you have a little bit of time to try one or two things before people fall off.  Unfortunately, you know where you may not. That’s not always the case. And sometimes you just have to make your best clinical judgment, but I think we use it as a tool, but not as the end all be all

Dr George
Like with with clinical judgment, right?

Dr Parikh
Yes, right.

Dr George
So I had two questions about your talk. So the HERV K that repeat element as well as the LINE-1. So are you seeing that before treatment itself, you could look at the tumor and see if there is over expression or not?

Dr Parikh
Yeah, yeah. David Ting did a really great look. He hasn’t published this yet, or we haven’t, but actually, when you look at we did a cohort of just neoadjuvant rectal cancer patients that did not go on to have a clinical complete response. And what he showed was that the patients that were what was left were these HERV K elements. So it’s almost seemed to be a biomarker of non response to just the chemo, too. And so what we’re trying to figure out, can we make these repeats engaged more to try to therapeutically, use them to push these tumors over to response.

Dr George
Yeah. And I was also curious to see that, like with the mutation, with the TP53 mutation, you’re seeing more LINE-1 expression and things like that, right? So, I mean, I would think that ideally, if they, if some of the testing companies, CtDNA, or the tumor testing companies, would also look at these elements that would be kind of nice to see for your trial itself, to select patients who you’d get a better response, right?

Dr.Parikh
Yeah. So we are actually working with some colleagues, actually at the Brigham to look at a LINE-1 blood assay as well, and then we’re trying to validate that with the tumor to sort of figure out. But as you can imagine, biopharma is like, what are these? What do we do with them? And David Ting and I are pitching this constantly, like, hey, we have an ISH, we have an assay. We can sort of, but it’s really hard for them to currently get it, but I think we’re getting there.

Dr George
Okay, thank you for that. So there is a patient with a pole mutation. It is like a S314A, missense variant and the TMB 7.4. So she’s asking, if there is, it will have an effect in choosing immunotherapy, like with the low TMB with pole? What do you think?

Dr Parikh
Yeah, so probably not. Unfortunately, I think I would have to look up this particular polE variant. It may just be a kind of a VUS. But you know, the typically, the PolE ones that we’re seeing response are like hundreds of TMB.

Dr George
Okay, thank you for that. I think that we can go for the updates, and then there is one BRAF-related question, so we can look at that. So you’re going to start with your CtDNA trial, right, first?

Dr Parikh 48:17
Yeah. So the CtDNA trial has had lots of challenges, but we’re not giving up on it yet. Some of the challenges came with being a trial that, just by nature, the Stand Up to Cancer team was only a northeast heavy team, and I don’t think when the team came together it was based on the correlative expertise and clinical expertise, but not necessarily like a cooperative group study. So it was a small number of sites that could activate the study and then COVID hit. And because it was a stage III trial, a lot of our institutions weren’t allowing stage III trials to continue on, because they were trying to improve cure, not necessarily metastatic, where they didn’t seem that there were other options. So we had a really big delay, and we so we’ve had around 40 ish patients at MGH, and it was only the last couple months that MSK and Hopkins and Cornell all came on board. So I think we’ll see now a rapid increase there. But we’re behind, but I think the  Stand Up to Cancer, even though the team is over, is still really committed to the question, and they’re not pulling funding from it, so we’re continuing. And, I think Manju, I had mentioned to you, and there was a lot of controversy around rectal. We were getting close to adding rectal, but people were very concerned that if we added rectal, we would get a lot of challenges about the meaningfulness of the data if we didn’t stratify it. And actually we ran the stats to stratify for rectal, it was going to be.. it’s already a 400 to 500 patient study to try to find 80 patients that are CtDNA positive after treatment and to give you a sense of that, almost 40 ish or so patients we have, it’s good we don’t want to be seeing positive results. We’re not seeing a lot of positive patients, which is good, but it’s not yet enough to sort of show that we’re able to, I don’t have it yet. I can’t tell you yet if we’re seeing a signal of clearance or not, with a small number, but committed to continuing the study. 

Dr. Parikh  50:27  
And then I think, mainly the updates from it that may not be yet, even on the clinical trials.gov was the HER2 edition, which I know I have mentioned to you. We have the cohorts that are just the MSS, getting FOLFIRI if they’re CtDNA positive versus randomized to a little bit more stringent surveillance than you would get under the NCCN guidelines. And then we have a Nivo arm for the MSI positive, HER2 arm for the HER2 amplified positive, and then the BRAF arm for the BRAF positive patients.

Dr. George 51:22  
I think that we are showcasing some of the trials in the COLONTOWN University website. So I think this might be a good trial to showcase. So maybe I’ll reach out to you after the call. So and then about Dr Cocorans trial?

Dr Parikh
Yeah. So no updates since ESMO, we haven’t looked,  so that’s the last update, but we had an expansion that already filled that BMS gave us for additional patients, so we’re looking through all of that now. Still have MSI BRAF spots open, but the BRAF MSS is finished accrual, and so now we’re looking at all their data. I think we’re hoping to repackage it, maybe for GI ESMO.

Dr. George  52:14  
Okay, July, then?  And then this is this question, some BRAF V600E patients in other countries are trying to replicate Dr. Corcoran’s and Dr Morris’s trial: checkpoint inhibitor + BRAF. Prior BRAF or IO, how has it affected the results? I think that he was allowing prior IO, and then, and now you’re not accepting it now…

Dr Parikh
We’re not Yeah, because it actually seemed the patients that were benefiting first were the untreated BRAF patients. So there were a few patients that had prior BRAF therapy that seemed to be benefiting, but it seems like the patients that were deriving the most benefit were not treated patients.

Dr George
Okay, okay, yeah. And then I think we’ve covered those questions. I was really interested in seeing that the 3TC results. I mean, are you planning trials? How can we help?

Dr Parikh
We are pitching it to a bunch of different people. So  we have five or six different schemas with different combinations, with radiation, checkpoint inhibition, with epigenetic drugs. Epigenetic space has been really tough for solid tumors, right? And so the companies that have guatacytabine, AZTEC, and ASA, given the challenges they’ve had, in solid tumors in the past haven’t been too key on a development path for solid tumors. So we’re trying, we’re looking at, potentially, there may be some opportunities just to do, like, via cooperative group, or Stand Up to Cancer, for example, like just in like a neoadjuvant FOLFIRINOX setting for rectal, sort of a proof of concept with 3TC and radiation. But we’re trying. we’re like, looking, we had some concepts brewing with ATM and ATM/ATR inhibitors, plus 3TC and IO, but biopharma is tough.

Dr. George 54:18  
Yeah. So again, in that also, are you seeing the LINE-1 expression in the TP 53 mutant? Like, I mean, actually, with patient selection, you should be able to get patients and I mean feasibility wise, it will be a great study, right?

Dr Parikh
Like, yeah. So I’m hoping, what’ll happen is once, if we can get these revisions out, it’s at a pretty high profile journal right now with kind of some major revisions. And so I’m hoping if that paper comes out in combination with this IPI and  NIVO study, people will kind of believe the story a little bit more, and then we have the tools, like we know how to select for these patients. So we’re not giving up.

Dr George 55:05  
Okay, I think the last question is about promising trials for all wild type MS patients. I mean, for  your patients, what are some of the things that you look for?

Dr. Parikh  55:16  
Yeah, we’re trying to look at some opening some new ADCs that are coming in the Phase I world. I’mnot gonna lie, I’m not too keen. We’re opening them because I think they’re good options to have. But some of the VEGF IO trials, I think we’ll just have to see where these Pembro lenvatinib Rego Nivo approaches. It’s interesting. You wonder if there are certain patients, liver metastases, patients where that may be more beneficial. And so it’s a little bit hand wavy now, but given kind of the responses we’re seeing with the TKI, VEGF combos in HCC, is there something about like liver mets or primary to see if that would allow those patients to benefit more. So very much looking at combination studies. But I think ADCs are another  area that we’re kind of paying attention to, in terms of companies that may have ADC for MSS disease. I think the other challenge with the MSS, which I don’t quite understand why biopharma hasn’t quite adopted is, sort of really looking at subsets of patients, right? We know, there was a TGF beta trial that ended up not showing.. the company ended up not deciding to put in colon cancer as an expansion cohort. But they didn’t select the right patients, right, that are kind of high stromal driven patients. And so I think, as we’re having conversations, trying to really encourage them to think about what the biomarkers are, and if it’s not CMS, is it things like this that can help us select patients.

Dr George
Yeah, it makes sense. So are you looking at the two ADCs, like the HER3 and the TROP2 those ones?

Dr Parikh
Okay, yeah, the TROP2. I think there are some, they’re looking at it potentially in the adjuvant setting too, using CtDNA too. So,yes. So exactly the HER3 and the TROP2.

Dr George
Okay, And then in your talk, you mentioned that you’re not a fan of stivarga, regorafenib- you choose lonsurf. Are you seeing that kind of a difference? Because the trials, they say they’re kind of comparable, but is there a larger number of patients that respond to lonsurf versus Stivarga?

Dr Parikh
I think so. I think I’ve seen true responses with lonsurf, and these are platinum refractory, 5FU refractory patients, Stivarga I’ve had very, very limited actual some disease control. But I’ve again, I just haven’t seen, I’ve seen maybe one true response. And getting getting to dosing at 160 is also really tough.

Dr George
Yes, yes, okay, it’s two o’clock. Thank you so much, this was amazing. The recording will be posted in COLONTOWN University. And thank you so much for your time and all the information. Thank you all for attending.

Dr. Parikh 58:19  
Bye, take care.

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2021
Dr. Parikh
ctDNA
MSS

Dr. Aparna Parikh  of Mass General discusses “Strategies for Making Cold Tumors Hot.” “Cold” tumors do not respond to immunotherapy. This DocTalk was recorded in the fall of 2021 with PALTOWN Scientific Director Dr. Manju George.

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Circulating tumor DNA: a new frontier in colorectal cancer

Circulating tumor DNA: a new frontier in colorectal cancer

DocTalk
2021
Dr. Cohen
ctDNA

Dr. Stacey Cohen of the Fred Hutchinson Cancer Research Center discusses circulating tumor DNA in this DocTalk, recorded for COLONTOWN in September, 2021. 

Manju George 0:00
Today, as part of Doc talks, we have Dr Stacey Cohen with us. She’s an associate professor at the University of Washington and an associate professor at the Fred Hutch Cancer Research Center, and she’ll be telling us all about circulating tumor DNA and its role in colorectal cancer. Thank you so much for doing this.

Dr. Stacey Cohen 0:19
Thank you. It’s a wonderful opportunity to get to speak with you, and I’m happy to talk today about circulating tumor DNA, which I’m calling a new frontier in colorectal cancer. Here are my disclosures.

Dr. Stacey Cohen 0:34
So we’re going to go over CtDNA, what is it? How do you detect it? Thinking about it as a marker of molecular residual disease, and then finally, it’s use in active cancer. So first taking a step back and what is CtDNA? So if we go at a really basic, basic level, inside every cell, there’s DNA gets converted to RNA, and then proteins, and from there, we can use those as potential, what we call biomarkers, or ways to try to sample what’s going on- that’s all within the cell. And then, if you take a single cell, and it’s a cancer cell, and it replicates and makes a tumor, then we’ve got a ball of cells there. So if we’re actually trying to sample or biopsy something, we could do our classic tissue biopsy, and then we have,a needle being put in, or a surgical biopsy, where we’re taking a piece of that ball of tumor. Or we could use blood based markers. So this could be something like CEA, which is a protein that’s made by the cells. Or the so called liquid biopsy, looking for circulating tumor DNA. And so this is a newer concept, because there you’re actually looking for the DNA of the cancer cells themselves in the blood. So in everybody, we have cell free DNA that can be detected, even in healthy individuals at low levels. And when it was first done as a screening tool, it was applied to prenatal screening- look for abnormalities in the numbers of chromosomes. So as an example, it could be used in a pregnant woman to look for trisomy 21 which is the hallmark chromosomal change of Down syndrome. But we now apply it in cancer to look for circulating tumor DNA, or CtDNA, which is the idea of looking in the blood for the mutations that we would expect to see in cancer, specifically.

Dr. Stacey Cohen 2:19
The reason why this could be very interesting is it gives us a real time sample of cancer activity. So it has a half life, or how long it’s around in the blood of less than two hours. So it changes very rapidly. And we know that there are some things that are good about it and some things that are limitations. So it is higher at higher levels of cancer. So we disay it’s cancer burden dependent. And there are ways that you could get potential false positives. So when we think about looking at CtDNA, there’s a lot of different ways that we can do it, but because it’s relatively easy to obtain, we can actually check this more than once. So we could do this early on.

Dr. Stacey Cohen 2:59
So this is kind of a timeline diagram here. So we could use it for the detection of cancer in the first place, hoping for screening or earlier diagnosis. We could think about it after a cancer is found, for molecular profiling or prognostication, to have an estimate of how someone might do with cancer. After surgery or definitive management, we could think about for detection of residual disease. If someone’s on longer term therapy, we could use it to monitor response to treatment. And then finally, we could do something looking for what’s called clonal evolution, or looking at the profile of different mutations in the DNA, and see how that changes over time, to try to see if that will help us better understand how to treat a patient.

Dr. Stacey Cohen 3:45
So when we think about methods for detection, there’s various different ways of doing this. There’s our basic PCR based approach, where you pick specific targets and it has fairly good sensitivity. Meaning that you don’t need very much of it to find it. And then we’ve got our fancier technology, next generation sequencing, where compared to the one target of PCR, we might look at over 1000 targets in this situation, and has much better sensitivity, though there is a range depending on the assay. Or you could do an even broader look, what they call whole genome or whole exome, where you look across the whole area, as opposed to specific area., And then you look at it with a little bit less sensitive approach. Within this we can also think about ways of detecting it that’s either what they call tumor naive so you’re checking the same sample or the same assay for every single person. Or tumor informed where you’re actually taking someone’s specific tumor sample and trying to find specific markers from the tumor sample that are also present in the blood. And with the data that we have so far, there seems to be some correlation between an individual’s tumor and finding it in the blood that might be a little bit more sensitive for molecular residual disease detection. Though, as I’ll talk about, as the assays get better, then that might not necessarily be the case.

Dr. Stacey Cohen 5:07
So this is not necessarily information that every patient needs to know, but I put this up here to say that there are pitfalls and limitations of CtDNA, just as there are with everything in medicine, and if something either isn’t collected correctly, or the person that’s ordering the test doesn’t know how to interpret it correctly, we can’t really use the information as readily. So again, important concepts are that it needs to be collected in the right types of tubes. This is not just a regular blood test. You have to know that you’re going in to order it. That the more cancer that there is, then the easier it is to detect it. And if you’re looking for really rare mutations, but you don’t have the type of test that’s looking for that, then you’re not going to find what you’re looking for.

Dr. Stacey Cohen 5:52
So as an example, this graph is supposed to show how different amounts of cancer in the body can actually affect the ability to detect CtDNA. So this person on the left here has a low amount of cancer, and so and then this person on the right has a higher amount of cancer, and you’ll see, in terms of the colors, they have more genetic variability. So if you’re doing blood samples, when you have lower amount of cancer, might be harder to detect the cancer at all. But as you get more amount of cancer, it’s easier to pick it up, and then you also get a greater variety of genetic mutations in your sample. So one way to overcome this is to take multiple blood tubes, and you’ll see that commonly, if you have CtDNA detected, or if you’re getting that drawn, that you’ll have two blood tubes, as opposed to our standard one blood tube because they’re trying to look for these rare mutations.

Dr. Stacey Cohen 6:45
So to kind of summarize the section of what is it? CtDNA is an emerging technology. It can be very useful as the so called liquid biopsy, as long as you recognize the limitations of this type of test and the particular platform or company that you’re using. The detection is based on the amount of tumor in the body, and tumor informed panels may be more sensitive, especially for molecular residual disease. Though, again, as the tumor naive platforms get better, they’re probably going to be more head to head. Next, we’ll think about this as a marker of molecular residual disease. So this is the idea of MRD, which either could stand for molecular residual disease or minimal residual disease. It’s been published in both ways. And this was done quite a bit in heme malignancy, so blood based cancers, with the idea that you’re looking in the blood to sort of see if everything is gone. And so the idea in a solid tumor is that we typically use scans to try to determine if the cancer is there or not, but what we’re actually looking for is with MRD, is trying to find an even smaller volume of disease sooner than you would be able to pick it up on scans or other clinical measures. And the idea here is that CtDNA might be that biomarker that helps us evaluate for MRD and might be able to pick up recurrences faster than CEA or other blood tests. The problem is, is that most of our analyzes so far have been retrospective or observational, which is a bit limited.

Dr. Stacey Cohen 8:15
So let’s think about how do you figure out if a biomarker is a good biomarker or not? The two terms that we’ll use to describe types of biomarkers, one is prognostic and one is predictive. So prognostic means, does it help us better understand overall survival. And predictive means, does it help us better understand treatment selection so that’s specific acute action. When we look at different patient samples in a retrospective series, so this might be, let’s say, a clinical trial, where they happen to check some blood samples along the way. It had nothing to do with the trial, but they looked back to see if they could find a biomarker for how people did. It could suggest a potential role, but there could be other causes going on, and it could be the result of chance, because it wasn’t really part of the trial. specifically. When we collect things in a prospective or forward moving way or in an observational way, this is better. But you need to have a certain number of events or occurrences of something that you’re interested in to be able to statistically say that something is different between groups. So again, in an observational study, that’s better, but we still don’t have a clear answer. So the best way to figure out that a biomarker is the right thing to do to make decisions on, is that it’s prospectively collected, and you’re actively making decisions in the study based on that biomarker. So for example here, let’s say we had a CEA, and we said, if someone had a high CEA, we were going to start a new chemotherapy regimen. If that was built into the study, and that was true, that that seemed to help people, that would be the best option for that test to become a new standard of care. So with circulating tumor DNA, we have some retrospective studies, we have some observational studies. But we’re still working on these prospective type studies.

Dr. Stacey Cohen 10:05
So why do biomarkers matter? Because again, we’re trying to help at time point zero decide how we should treat patients to try to get the best outcomes. So this is an example of a Kaplan Meier curve, and so at the top, at time point zero here we have 100% of people alive, and in this case, recurrence free. And if we look at the axes down here, we’re looking at time. So if we just take the black line in the middle in this supposed patient population, this is how all patients did. But we know some people are going to do better than that, and some people are going to do worse. So the question is, if we had CtDNA was a good biomarker. If CtDNA was negative, could we actually give them and we knew that those patients did better, could we give them less intense therapy? Or alternatively, if patients are CtDNA positive and are more likely to recur, could we actually increase or escalate their therapy to try to make it more intense and see if we can impact those outcomes.

Dr. Stacey Cohen 11:05
So now I’ll start to talk about some of the data where we’ve actually looked at CtDNA and see how it would impact survival. So first we’re going to start with prognostic markers, so looking at overall survival. This was done within the IDEA France study, which was one of the three versus six month trials. This one done in Europe, looking at adjuvant FOLFOX or CAPOX and stage III colon cancer. So they had over 2000 patients in the study, but about 1000 had Ct DNA that was sampled prior to the initiation of chemotherapy. There was a slightly higher risk population compared to the total sample. They looked at two methylated markers by PCR. So remember, PCR is kind of, in some ways, our most limited way of looking at CtDNA. And this was a tumor naive approach. So everybody got the same two markers. They showed that 14% of patients were CtDNA positive after surgery, and that the disease free survival was worse for patients who were CtDNA positive, as opposed to patients who were CtDNA negative. When they looked at three versus six months, this was significant within the three months population. And when they looked at low risk versus high risk, this was significant within the high risk population. So when compared to that example curve, where the curves could either go high or low with CtDNA, they did separate out the two groups, but maybe not as profoundly so as the cartoon showed. So this platform here is low cost. It’s very reproducible. It’d be easy for someone else to run this test. But the how useful this is, checking these two methylated markers is less clear because we didn’t see as profound differences.

Dr. Stacey Cohen 12:51
Next, I’m going to show some data from the Australian group, which has published a lot about CtDNA. And they were looking also at how does clearing CtDNA and checking it over time, how does that affect prognosis? So this is 96 consecutive stage three colon cancer patients who had surgery and then they were planned to have six months of adjuvant chemotherapy. CtDNA was collected after surgery and then again after chemotherapy. And in this particular one, they looked at 15 commonly mutated genes and picked one from the tumor to track in the blood. So it was a tumor informed approach. The majority of patients, but not all of them got an oxaliplatin based therapy. In this test, 21% were positive after surgery, and that decreased to 17% after chemotherapy. But where I think this is most interesting is when you look at patients over time. 25% recurred overall, and the majority of these were in CtDNA positive patients. And again, the majority of CtDNA positive patients did have a recurrence, which typically happened about two months difference from what you would see with imaging. So looking here, we see a more polarized difference between patients who were CtDNA positive versus CtDNA negative, but it was even more polarizing when you looked after chemotherapy in terms of survival being much worse in patients who were still CtDNA positive versus patients who were negative. So when we look at this over time, this is where I think it becomes interesting. So if someone was positive after surgery and they stayed positive despite chemotherapy, the survival was quite poor. But if they were positive after surgery and then cleared their CtDNA and became negative, their survival was much better. Similarly, patients who were negative after surgery did the best, especially if they stayed negative, but if they were negative after surgery and then their ctDNA turned positive, their survival is much worse. So this shows that this is a biomarker which is helpful, not just at a single time point, but also over time, and helping us understand prognosis for patients.

Dr. Stacey Cohen 15:01
So how does this compare to CEA? Because we have another blood marker. Do we really need something better? In this particular situation, the CtDNA outperforms the CEA. And so we can see here, patients who had the CEA elevated did worse in purple versus the patients who are negative and in green for normal. But I think the interesting part is when you compare both CEA and CtDNA. So there were six patients that had high CEA and also who were CtDNA positive, and five of them recurred, so almost all of them. But when you looked at the discordant ones, there were six patients who were high CEA, but negative CtDNA, and only oneof them recurred, suggesting that the CEA was not the best predictor, and CtDNA may be better. If we compare it to when we would have seen it on scans, this is two different studies, this is sort of a funny curve, but you read it from the bottom, so time to detection of relapse. Here’s zero time point down here at the bottom. And in the blue dots we have CtDNA, and in the yellow dots we have radiographic. And if it’s pointed up towards the left, it means that it took a longer time to see it on scans. And a median of 8.7 months in both trials actually. In a separate panel where they did a tumor naive panel, the lead time was 11.5 months, suggesting that those tumor informed approach may be better.

Dr. Stacey Cohen 16:37
So of course, though, we don’t just live in a bubble, and we want to say, is there something that we could actively do to try to help patients clear their CtDNA? So then we look at, does giving chemotherapy actually help us do that? So in this study, we have 130 colorectal cancer patients, and 89% were positive before surgery, and 11% were positive after surgery. And when we look at that after surgery time point, the majority of patients who were CtDNA negative did much better than patients who were positive. If we look at how chemotherapy influenced that, approximately 70% remained positive despite chemotherapy, so only 30% were able to clear their CtDNA. But if they did, and they got grouped in this upper group, they tended to do better. So this particular tumor informed panel seems to help us make some decisions. But again, downsides of this type of panel is that it’s expensive, it’s proprietary, so you send it off to the company. We don’t really know which specific gene they’re testing. It requires tissue, but it could be highly informative and give us much more interesting information and helpful information than we might have had with some of the more rudimentary approaches from before. But the more that these panels improve, the better options we have.

Dr. Stacey Cohen 18:07
So this is very recently published data. 84 patients of colorectal cancer undergoing curative intent treatment, all stages and you can see there’s a variety of stages here. 45% in neoadjuvant, 54% had adjuvant therapy. So there’s a variety of treatment patterns. 24% were positive for their CtDNA, and when we look at recurrences, so 36% recurred. It was much more common in the CtDNA positive folks than CtDNA negative. And the sensitivity while low with that original panel, when they added epigenetics or methylated markers, then we could improve the sensitivity. In comparing that with CEA, as you can see here, it really wasn’t as helpful with CEA alone. So again, in this sort of newer version of a tumor naive panel, again, expensive and proprietary, but has the potential to be highly informative and have rare false negatives. So some folks have said, we should be doing this type of platform for most patients, because you don’t have to wait for the tumor sample and have enough tumor to biopsy, and it takes a little longer to get that first result if you’re using a tumor informed panel. But I will say that in looking at the trial itself, they still had quite a few patients that had some either sample quality issue or limited sample issue where they couldn’t run the test. So in neither the tumor informed or tumor naive is there a sure thing to do. So we leave it right now is that we have a couple of different options that we could do.

Dr. Stacey Cohen 19:47
So could we actually change our treatment plan based on the CtDNA? So again, this is going back to the Australian group. So this is stage II colon cancer, and patients had surgery. And they got adjuvant chemotherapy, as was recommended by their physician. But recall that many people in stage II, and probably most people in stage II, did not get chemotherapy. As expected, it wasn’t as common to have CtDNA positivity, but 9% had it after surgery, and it did reduce in patients who had chemotherapy. So if we look at their CtDNA status again, patients who were negative did much better than patients who were positive. And if we look at clinical risk factors, so like T stage and other surgical features, patients who were considered to be low clinical risk did better than they were high risk, but maybe not as profoundly separated. Where it’s interesting is if you take this low risk group and you say, is there any way to figure out, just becauseyou’re T3N0 does not mean you’re never going to respond, its just less likely. So if we look at that low risk group and break it down, patients who are low risk and CtDNA negative did really well, but patients who are low risk but actually had CtDNA detected, they did much worse. So this suggests that maybe we could actually figure out which of these stage II patients we should give chemotherapy to, if we were able to separate out, not just by CtDNA, but also by looking at our clinical risk factors and combining the two together.

Dr. Stacey Cohen 21:21
I want to point out that a lot of what I’ve showed has been colon cancer, but we do have very similar data in rectal cancer, just not as much of it. So this is an example of one of these studies where we have, now radiation included, and we’ll see that from diagnosis to the end of radiation to after surgery, we see a decrease in the detection of CtDNA. And if we get all the way to that point and someone’s after surgery, again, someone who’s CtDNA undetectable or negative at that point has much better outcomes than someone who has positive CtDNA. This particular study did not include TNT or total neoadjuvant therapy, where we’d be giving chemotherapy in the neoadjuvant setting or before surgery, but it remains interesting and good to know that these patterns exist in rectal cancer as well.

Dr. Stacey Cohen 22:09
Now when we’re able to be aggressive in stage IV, of course, we can sometimes take these patients through surgery as well. And then we would want to know if what we’re doing in earlier stage disease also applies to stage IV. So this is some data that I presented last year, which is a so called “real world” approach, where this was clinically ordered CtDNA. So again, observational data, without being within a clinical trial. But what we could see again is that for patients who had pre surgical testing, that CtDNA was commonly detected. And it was found still after surgery in about half of the patients. If they got chemotherapy, it was suppressed, but again in the surveillance time, so after the chemotherapy was done, we still saw CtDNA positivity in about 50% of patients, which goes along with the expected relapse rate. I haven’t mentioned it too much, but we can also quantitate the CtDNA or give kind of a number to that positivity. And as we would expect after surgery, the numbers would go down, and then when we’re starting to pick up on that CtDNA in the surveillance setting, it’s going to be a lower number, because we’re looking out for recurrences in a faster timeframe.

Dr. Stacey Cohen 23:24
This is a bigger study with that same assay. So again, looking at metastatic patients in Europe undergoing curative intent treatment. And they had their CtDNA checked at some defined time points, and a portion of them had adjuvant therapy. Again, about half of patients had CtDNA detected after surgery, and what they were able to show again is that recurrence was higher in the CtDNA positive folks, 98% versus 37 of negative.So again, just because your CTD negative does not mean that the recurrence is zero, but it does suggest that it’s a much lower risk. If we look at a single time point after surgery, we see that there is good separation of the curves, and CtDNA negative patients do better than patients who are positive. And if we follow with multiple subsequent time points, then we can really tell that better over time. And I put some of the information here. So before we were talking about a lead time from imaging of 8, 9, 11, months, because these patients were being imaged a lot more often being stage IV, the lead time was 3 months, but still preceded what we would expect for radiographic occurrence. So to summarize this section on MRD, ctDNA positivity at the end of treatment is associated with worse outcomes. Detection of CtDNA during surveillance is highly associated with recurrence and may precede what we would see on imaging by several months, but we still need prospective data to use CtDNA to adapt therapy recommendations.

Manju George 25:04
Dr Cohen, can I ask a question? This is excellent. Lots of great information. So my first question was about the rectal cancer trial, where you said that they were doing radiation and then using CtDNA to show that after every step, the CtDNA levels were coming down, right? My question was did they mention in the study,what is a good time after radiation therapy to do CtDNA testing?

Dr. Stacey Cohen 25:32
Yeah, I think it remains a good question. I don’t think we fully know the answer. So after surgery, we typically say two to four weeks would sort of be the ideal time to check that. And there’s been other studies trying to find that key time point. It’s a little harder after radiation, because you don’t just take the tumor out of the body and then the blood can clear. Here, there’s a process of cell death that can last six eight weeks, so I don’t think we truly know, except to say that very few people are willing to wait that full six to eight weeks to find out just on a blood test, what’s going on. So I would think checking it around the four to six week mark might make the most sense. But in reality, we could be checking it sooner. I think we just don’t have the data for different time frames to understand when the best time is.

Manju George 26:20
Okay, thank you. And then my other question would be about what you just showed the stage IV treated to Ned, so the right side graph said that 37% recurred even when they were CtDNA negative. So was that like one time testing?

Dr. Stacey Cohen 26:40
They did a couple of time points, but again, it was still kind of an observational study. So we don’t know if that would really exactly mirror what’s currently done in clinical practice, but they did have a few time points that were checked there.

Manju George 26:58
Okay, so in relation to that, is it true that, like, for example, with early stage they say that the the highest chance of references in the first 18 to 24 months after the end of treatment. Does that hold good for this group, stage IV treated to NED?.

Dr. Stacey Cohen 27:13
Yeah. So I mean, many of the CtDNA studies are only checking it for two years after the time of surgery, regardless of any chemotherapy or anything else that’s given with the idea that if by the end of that two year time frame, you’re still negative, you also have this lead time, hoping that that would be farther than what you would see on imaging. And so two years should be sufficient, because the majority of recurrences do happen in that early time frame, and probably happen even faster for stage IV.

Manju George 27:43
Okay, thank you very much. Yeah. Does anyone else have questions? Or can we go forward? Yeah, I think so.

Dr. Stacey Cohen 27:53
Great. Thank you. I just wanted to throw up here a couple of studies, because of again, it’s really important that as we learn about CtDNA, that we’re supporting the efforts to learn more. So we really can make this part of practice, if that’s the right thing. And so I just included a couple examples of studies. There’s not a lot out there, but there’s a couple of examples, so we can both think about de escalating or escalating therapy. But the ones I show here are largely looking at, can we give different or more intense chemotherapy for patients who are CtDNA positive? And I expect that this is something that is going to be very well studied in the future, moving forward.

Dr. Stacey Cohen 28:35
So lastly, I’ll talk about the use of CtDNA in active cancer patients. So we already talked a little bit about a tissue biopsy versus a liquid biopsy. So the liquid biopsy is certainly less invasive, has less cell content, and there are pluses and minuses with it, but it is relatively easy to obtain. Does it actually matter, though? So this is an example of of why we could still use it. So this is an example of metastatic colorectal cancer patients who are receiving first or second line therapy. 77% had detectable ctDNA at baseline. Now this is lower than some of the other studies, and again, it also refers to what type of panel you use. And I think a bigger take home point is that it really matters which panel in which study, because we can’t necessarily say that we learn from one study to the next. And then, you get one company and then the other company, because each one sort of has to be replicated on its own. But within sort of the general concepts they seem to be the same. So what they showed is that higher levels of CtDNA were associated with worse survival. Which sort of goes along with what we’ll see with CEA, so maybe not that different. We can use it to detect commonly altered mutations. So KRAS, BRAF, these are key molecular markers that we need to know about every metastatic colorectal cancer patient. In this particular study, all had detectable CtDNA, and it had very good accuracy when we compared tissue to the blood based assay, so showing that these were reliable ways of checking it. But a more interesting thing that we’re starting to think about is, could we use this more longitudinally? Could we do this over time, to try to think about re exposure and whether or not that’s working? So as an example of this, this is the CHRONOS study that was just presented at ASCO this year. Patients who had prior EGFR therapy, not right before, but at least two lines before. So think of it, maybe someone who had it in first line, then they added different therapy in second line, and now you’re trying to decide what to do for third line. They used digital droplet PCR, so again, our more basic method, on cell free DNA to look for resistance mutations. And if patients seem to still be RAS RAF wild types, suggesting that they might respond to EGFR therapy, they were offered to go on this re challenge study where they received EGFR inhibitor again. And the response rate was 30%, they said they expected a response rate if we hadn’t done this test of 20%, so maybe it was a little bit better. And disease control rate of 63% with a progression free survival of four months. But what it concerns me a little bit is sort of what we see here over time. So this spider plot, what it’s showing is how patients did over the course of the study. So for lines that bend up, those are patients that are progressing. And in red, we have patients who cross the threshold where they’re going to call it progressive disease. In gray, you have the patients who have stable disease, and then in green, patients who actually hada response. And so you can see here that there is a group of patients that seem to respond, or actually have at least 30% tumor shrinkage. But those responses don’t seem to last very long, so almost as soon as they go down the lines go back up, suggesting that those responses were not durable or not maintained. So it means that, yes, we can potentially re expose patients to older therapies, but it still always begs the question of, did it work and is it worth it? And I think that’s something we’re still trying to figure out.

Dr. Stacey Cohen 32:19
One nice thing about CtDNA is we can use it to detect rare fusions. And this is important because sometimes there are targetable mutations and therapies like NTRK. And might work better than than tissue in certain examples. So for NTRK, specifically, if we look at it here, they were able to detect it at a slightly higher frequency as compared to tissue. But again, if we look at the scale here, these are incredibly rare. And notably, there was a lead time or difference of 24 months, (two years), between when the tissue was collected and when the CtDNA was collected. So if you think that someone’s mutation profile may be changing over time, going back to the old tissue and trying to find a mutation may be less helpful. But of these, the only one really approved for colorectal cancer is NTRK and they’re very similar. So I’m not sure that we necessarily need to all go out and get retested, but I think it’s just important to know that this could work quite well.

Dr. Stacey Cohen 33:21
Microsatellite instability is a lot harder because it’s not one specific genetic marker, but you’re looking at this pattern of change in the tumor. And so when we look at CtDNA versus standard methods, it seems to work pretty consistently. When we compare it to PCR and NGS, there are some discordant cases. So these are the ones in blue here where the CtDNA was positive, but the tissue was negative. And it probably has to do with the fact that IHC can sometimes be a little bit buggy, but in general, it was very well concordant, which are these dark gray and red bars that you’re seeing here. Again, we can use this over time. So this is an example of monitoring CtDNA while someone’s on therapy. So these patients were getting PD-1 therapy. And so this was from not just colorectal cancer, but other cancers as well, as long as they were MSI and getting this PD-1 therapy. And when we look at progression free survival, we see some differences.Looking at the tumor mutation burden in the plasma, patients who started out high did better than patients who were lower. And interestingly, you would expect all these patients were MSI by tissue, and so that’s how they got enrolled on the study. But what this was showing is that if we actually looked at the tumor mutation burden by the cell free DNA, that was probably a better marker for tissue response than looking at old tumor tissue for MSI analysis. So maybe it’s because it’s real time. Maybe it’s because there’s some variety what they call that mosaicism, where there’s different patterns of mutations in different parts of the tumor. And that kind of gets equilibrated out when you take a blood based test, but it’s interesting and thought provoking. Again, we right now don’t do this in trials. We don’t know if this is really the right or wrong thing to do, but it is interesting that maybe this could be something we would start doing.

Dr. Stacey Cohen 35:18
So finally, to summarize, so non invasive, liquid biopsy can be helpful to assess the cancer profile, or if a tumor biopsy can’t be obtained, then we could definitely use that to do molecular markers. Some platforms, but not all are validated for MSI or tumor mutation burden. And so these are things that, of course, if we were checking that we’d want to know in advance if our panel could do that. And importantly, if we take these tests over time or serial biopsies, we can sometimes watch how someone does, either from resistance or success, but the problem is we don’t know how to apply this to the clinic. And there remains issues regarding cost and reimbursement. So where are we at today? With CtDNA, these tests can be ordered by your physician. We can debate tumor informed versus tumor naive type panels, and there are good options and bad options for both, and there’s pros and cons of each strategy depending on the platform. So it would be deciding with your physician which they’re comfortable with and what you’re kind of looking for. The problem is it’s not yet clear how treatment decisions should be changed based on CtDNA results for minimal residual disease. So at this point, I consider it as another leg to stand on. We have our clinical factors, we have our imaging, CEA, and now we have a fourth leg to that stool, which is CtDNA, but by no means is it the be all and end all. It’s also not currently part of the NCCN or national guidelines, and I highlighted some of what they put here, which is that we right now don’t have that predictive data. We don’t know how we should use the CtDNA results to absolutely change therapy, and so because of that, we don’t yet recommend this for every patient, but the NCCN encourages enrollment in clinical trials, because we think that at some point this may be really useful information. And with that, I’ll say thank you for listening.

Manju George 37:09
Yeah, thank you so much. This was great. I have a couple of questions. So your slide on NTRK fusions. You thought that both the tissue and CtDNA were kind of similar, right? So do you suggest, then that for people who are interested, it’s best instead of having a new biopsy or tissue biopsy, it might be just better for them to do a blood test, right?

Dr. Stacey Cohen 37:34
Yeah, I think it would be fine to do a blood based biopsy rather than going to the old tissue if, it was that or get a new Bnew tissue biopsy, it might be very reasonable just to do the liquid biopsy instead.

Manju George 37:49
Okay, my other question was, like, I was kind of interested in what you said about that figure for MSI high, where you had that blue box, where there was some discordance between tissue IHC and CtDNA. So from your personal experience, do you think that the CtDNA test is better than the IHC? Does IHC have more false results? Is that what you meant?

Dr. Stacey Cohen 38:14
Right. So IHC, even though it’s one of the most common ways that we look for MSI in the tumor, it does have some errors, because we can’t always tell, it can show artificial loss of expression at the wrong times. And so my institution, for example, pretty much only runs next generation sequencing because we think that it gives the highest quality result. And so this would be next generation sequencing on the tissue. And I would say that versus the liquid biopsy are probably pretty similar. But it’s a more complex test to do NGS, more expensive, and so depending on institution and resources, IHC is still done routinely, but there sometimes is some interpretation that’s needed for it.

Manju George 39:07
Okay, my last question was about CtDNA for MRD. What you mentioned was the NCCN guidelines and all about escalation or de escalation of therapy. What is your opinion about using it for surveillance post treatment?

Dr. Stacey Cohen 39:24
Right. So I think that different providers have their different biases about whether or not they think that this is potentially a useful platform. Clearly, I have some bias thinking that it could. But I also remain cautious, because I’ve had patients say, start chemotherapy in the adjuvant setting, let’s say for low risk stage III, and say, okay, my CtDNA came back negative, can I stop? And I’m not yet comfortable making that determination. So I say it just gives us more confidence in maybe what we’re planning to do anyway. So if we were thinking, okay, you have a high risk stage II, and you really wanted to stop at three months, because we think that the differences in survival are only a couple of percent there. Maybe that CtDNA would give us some confidence, if it was negative, to stop early, and if it’s positive, maybe that would give us some motivation to say, let’s really try and clear it with the six months and see if that helps. So I think that it can kind of add to what you’re going to do anyway, which is why I think of it as another leg to stand on, as opposed to the only thing that’s determining how we treat patients.

Manju George 40:36
So but what about like, two years after adjuvan therapy? Would you recommend that among all the other tools, like, forexample, a patient who’s CEA is not useful. If it was like one or less than one, what in your mind would be the value of using a CtDNA test for surveillance?

Dr. Stacey Cohen 40:55
So I like to use it for my patients. Again, not everybody does, but I have been checking it on a lot of my patients. However, if someone was already a year two years out, I probably wouldn’t start checking it now, because I think in terms of timelines, the majority of the recurrences do happen earlier on, so I don’t know how much benefit we would getin starting to do surveillance testing at this point. But if someone was newly in the last few months, had had their surgery, then I think would be reasonable to ask your provider about if this was a test that would be useful.

Manju George 41:32
Okay, okay. I think we have one question in chat. Yeah. So he said the heather, do you want to read your question?

Heather 41:44
Yeah, sure. Thanks. So unfortunately, we just haven’t been able to get any traction with getting my husband’s care provider to even really have a conversation with us around potentially ordering a CT DNA test and the unfortunate thing is, his scans, nor his CEA level have given us any insight, and so I feel like this could be potentially beneficial. And when I had the conversation, I said, I don’t necessarily want to do this for you to drive treatment considerations off of but I think informationally, it may potentially give us a heads up. And I mean, they just shot us down quickly and wouldn’t even… So I mean, is there something I could say differently, or a way I could phrase the question or go about it to maybe get them to entertain the idea?

Dr. Stacey Cohen 42:34
Yeah, I think it’s really hard. Because, again, I think to some degree, like anything new, there’s kind of believers and non believers, and it might just be that the physician that you’re currently working with just doesn’t feel that it’s going to be reliable, or doesn’t think that we will know how to interpret the information well enough. And I mean, there’s a good lesson in medicine, which is, don’t order a test that you don’t know how to act on, right? So, but at the same time, I think that you named some really important features, which is when if we’re standing on those four legs, and we can’t stand on the CEA one, and the imaging is a little iffy, then it’s a lot harder to do surveillance reliably. And so, I feel like I might, not knowing the full story, I might be comfortable ordering in that situation, but a colleague might not. And so maybe one thing to do is just to consider a second opinion of someone at an academic institution nearby, or if you’re at an academic institution, a different one, and see if just a different provider might be more open to it, because I’m not sure you’re going to be able to change someone’s mind, because, again, the should part is not there. But I can tell you, anecdotally, I’ve had number of patients where the regular scans were unrevealing, the CtDNA went positive or high. And then we did a different type of scan, like an MRI or a PET scan, because of their unique situation, and we did detect a recurrence. So I have had situations where I do feel that the CtDNA helped me, and often it was in patients where the CEA was unrevealing, because not everyone makes CEA, so we don’t always have that as an option.

Manju George 44:20
Thank you. Thank you. Yeah. And what we have done in COLONTOWN is that since people started using Signatera, we have a Google Doc, or a Google sheet where any person who has ever had CtDNA testing would write the name of theirdoctor and this cancer center where they got the test. So our idea was that, when you have a new patient coming in and who’s interested in Signatera, we would say, hey, take a look at the list. If you have a doctor in your institution, somebody else who has ordered the test, the simple thing would be to tell your oncologist. Could he or she talk to that person ? Maybe that would change their mind. Or if you see the list and then see that they’re not the only person in that whole state using it, but there are a couple of people who have used it, maybe that would make them want to learn more. And kind of be helpful for the patient. The other question that I had is, like, recently, we have seen some plasma TMB tests that people are getting, and then the values are, like, 30 or 40 or something like that, when compared to, like tissue TMB, where the FDA approval for pembro, for example, is at beyond 10, right? And then there is some confusion, because, I think that there was maybe one paper or something which said that a plasma TMB of 18, maybe or 28 I don’t, can’t remember it right now, that was somehow similar to a tissue TMB of 10. I mean, I see these kinds of comments where people are confused about how to interpret it, and especially when they see the numbers, they’re like, Oh, should we be doing immunotherapy now that we have the number?

Dr. Stacey Cohen 46:08
Right. And I mean, I would say, even with tissue, we think that people are unlikely to respond at 10. With colorectal probably need 12 or higher so, and maybe even 15. So even though the FDA might make these blanket statements within an individual cancer, it might not be exactly correct, so I have to look at the specific test. But again, I think this goes back to that issue that even though we think of CtDNA as one concept and tissue is another concept, each individual person running the test may report out or analyze the data differently, such that we can’t always apply it across different ways of looking. And so we’d have to look and see like, kind of what their scale is in that particular plasma assay for how they call higher or lower, and then try to kind of equilibrate that down to what we would do for standard tissue based testing. Yeah, but yes, it’s incredibly confusing. Yeah, which is why I think a lot of doctors are not ready to order it, and that’s okay, because, again, if you don’t know how to interpret the results, as many providers do not, then it makes sense to not order the test that you might not feel comfortable with. But I think that this is a technology that is not going away anytime soon.

Manju George 47:24
Okay, thank you so much. This was great, and I’m hoping that I can edit it and post it in CTU so you can take a look and you’re welcome to share it with your patients, or you know however you want to use it.

Dr. Stacey Cohen 47:35
Okay, sounds great. Okay. Thank you. Bye, everybody. Thank you.

Manju George 47:38
Thank you! Bye. Thank you all for attending.

DocTalk
2021
Dr. Cohen
ctDNA

Dr. Stacey Cohen of the Fred Hutchinson Cancer Research Center discusses circulating tumor DNA in this DocTalk, recorded for COLONTOWN in September, 2021. 

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