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BREAKWATER: 2026 Update

BREAKWATER: 2026 Update

DocTalk
2026
Dr. Kopetz
BRAF
MSS
Trials

In this DocTalk, Dr. Scott Kopetz, MD Anderson Cancer Center, discusses the much awaited results of the FOLFIRI + Encorafenib + Cetuximab arm of this 1L trial for patients with BRAF V600E–mutated metastatic colorectal cancer. Recorded in February, 2026.

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN.Welcome to my first Doc Talk of 2026 and for those of you who are joining live, welcome. And I am so excited to have Dr Kopetz with us. And as many of you know, he’s no stranger to us in COLONTOWN. He’s an amazing oncologist, a very well known researcher , who designs these amazing colorectal cancer trials, and is a speaker at all the international and national conferences, and has received so many awards. And in between all of that, he finds time to engage with us, and for that, I’m so grateful. And he has many titles and honors, and I think to us, he’s a beloved oncologist who’s focusing on BRAF and KRAS mutated colorectal cancer. And so once again, I’m so thrilled to have Dr kopets with us to talk to us about the 2026 BREAKWATER updates. Welcome Dr Kopetz.

Dr. Kopetz 1:14
Yeah, thanks so much for such a delightful and kind introduction, and thanks for all that you do, and you really do such an amazing job of educating and advocating. And so we’re so grateful for community, for you as well. So delighted to be able to share some of the updates in BRAF.And I thought during this, I would take opportunity to kind of take a step back with a little bit of history, but then really talk about where we are. How are we thinking about this in 2026 so with that, I had to start with just the complexities that we’re dealing with. Don’t worry about interpreting all this. This is for the gurus in the field. There’s a Frank McCormick, he’s kind of considered one of the fathers of RAS and he’s kind of put together this pathway about all the complexities of how normal cells and then cancer cells signal. We kind of think about, and you may have heard in biomarker testing, kind of the key ways that colorectal cancer can acquire mutations. These can be through KRAS, NRAS mutations commonly, but also BRAF. And BRAF is a distinct entity. It’s probably the one that we were able to target first, but a lot of the lessons that we’re learning, and we’ll come back to this point that in BRAF are now being applied to KRAS G12C, and think in the future, G12D will be following right along in this path. So hopefully these wedges of targetable oncogenes will continue to grow.

Dr. Kopetz 3:05
Okay? I said BRAF was targetable. This now goes back for more than a decade where the kind of first inhibitors which some brilliant medicinal chemists figured out that you could actually target this specific mutation that’s present in BRAF. Now I’ll take a moment to say what we’re talking about is a BRAFV600 E, so it’s the most common mutation, but there are others. Now the others are a little more complex. Everything that we’ll be talking about in terms of targeting is really this most common V600E mutation. Others we’re not fully sure what to do with, because they’re so heterogeneous and complex. But the BRAF V600E, also common in melanoma, and some of the initial studies that kind of a classic one.

Dr. Kopetz 3:54
This is one of the first studies that we ran where we said, okay, let’s treat melanoma. Let’s treat colorectal the same and we got very different outcomes, and that kind of set us off down this path to try to figure out what is it that’s unique about colorectal? How do we better target that? So there’s really two main crux, right? We have to improve the shrinkage of the tumor. And then, importantly, really, really target the durability. And we’ll talk about that, about how can we keep the cancer, shrink it down, and keep it down for as long as possible? So a lot of the work has been trying to do both, and you’ll see progress has been made there. All right, so let me take a step back. If you were a medical student, maybe first or second month of medical school, you would get introduced this concept of homeostatic regulation and how it’s used in the body. But I think it’s a useful concept for us to understand, and it’s this idea that our bodies like to be in a certain condition and that they have feedback mechanisms to keep us in that that condition. And there’s the more critical the pathway is, the more critical that regulation is, the tighter the feedback is present. And it turns out that this growth factor pathway, we call it the MAP kinase pathway, it incorporates K RAS, NRAS, BRAF. Those are incredibly important for cell growth and healthy cell division, and so that the cells, especially the colon cells, have a lot of these mechanisms to keep that level of signaling just right. so this is homeostatic. And Walter Cannon really was the–and you can see how, just by virtue of the picture, how old this concept is, but we still see it.

Dr. Kopetz 5:58
So what does it mean? Well, when we are in normal physiology, you can think about your glucose levels, if you’re not a diabetic, about how tightly regulated that is, but even something simple, like your body temperature, right? So you go out and sit in the sun, your body temperature rises, your brain recognizes that. It then dilates your blood vessels and also induces sweating. And then the response is, your body’s temperature is restored, right? Very simple concept, but it’s this kind of regulation to say your body wants to keep its temperature in this really tight range, and it’s going to do everything it can to maintain that. So the same thing happens after targeting BRAF, right? So in a BRAF mutation growth signaling this tumor cell is has a level of signaling that it wants, and we can give an inhibitor of BRAF, but there are feedback mechanisms that this tumor uses to say, nope, nope. That’s too low. I want higher signaling in this growth pathway. And one of the things that does is it activates EGFR, and it turns out that that then reactivates the growth, and the signaling is restored from the concept of the cancer cell, right? So this is homeostasis from the perspective of a cancer cell.

Dr. Kopetz 7:29
Now, I know there’s a lot of aficionados out there, so if I were to do this and try to do this simplistic Frank McCormick figure, it would look like this, right? Where there’s this signaling cascade, where one protein, activates the next one, which activates the next one, and down at the bottom of that is growth, right? This is the signal that says cancer’s growing. So if we have the BRAF mutation now, green is kind of signaling, an activation that’s just pumping out signal– we inhibit BRAF, what happens? It gets shut down, right? So transiently, it does a good job, but what happens then is you get these feedback mechanisms that get de repressed. EGFR now gets turned on. It now signals around that inhibition. We’re still blocking BRAF, but there’s pathways to get around it, and the signaling is restored, right? So that’s why BRAF alone doesn’t work, because the tumor is adapting so quickly. Now, when you then now come in and block BRAF and EGFR together, that’s when you can shut down the system, right? It can no longer compensate. You block two key nodes and and that was the premise. So fast forward through a lot of clinical trials and work, the BEACON study was the first to really show this, that when you combine BRAF and EGFR, compared to a control arm, you can improve overall survival response rates in this setting, and this was in a later line population, where there’s improvements here from 5.9 to 9.3 months. So improvements, there’s a bit of a tail. This idea that a proportion of patients can really have a longer duration of that as well. And the overall the side effects that you can see here as well. So this was several years back, and resulted in approvals for the second and third line. But we want to do better, right? And so really trying to understand, well, how could we do that? What’s the path forward there?

Dr. Kopetz 9:47
So gonna take a step back to the lab, because I’m a physician scientist. So we tend to do something the lab, bring into the clinic, learn from the patients, bring it back into the lab, and kind of keep iterating. And so throughout all of this, we’re doing a lot of preclinical modeling of cancer. And so, how do we do this? Well, we use mice for this. And why mice? It’s kind of weird, right? Like, why do we use mice? Why don’t we use other areas or other model systems? So it turns out that we actually have a fair bit of similarity with mice, like 95% similarity to mice in our genetic code. A lot of the ways that the our systems work are very similar. And then there’s some practical advantages that we can house them in controlled environments. Can handle them, and they have kind of been used for decades, continue to be used for a lot of this testing, right? And so we’re really really, I think, thankful for the opportunity to learn as much as we can in these systems before we bring to patients, so we’re bringing better things forward.

Dr. Kopetz 11:04
So, you know, just want to advocate. This is kind of what what the mice look like. So we actually use these mice that don’t have any hair, so they’re called nude mice. So, and then a lot of times the tumors are kind of grown on the flanks of the mice, so we can put little calipers around it and kind of measure how things are are going and advancing. Now we take extraordinary care to provide a really good environment for the mice. We actually have veterinarians whose sole job is every day to check on the well being and health of the mice, and they get all sorts of like things to socialize together through all of this. And so just know that we’re trying to be really good stewards of this, and we don’t take this research lightly, but we know that it’s really important for our patients. Okay with that a bit of aside, because we like to show as researchers how can we do things right? And so one of the questions that we were asking is, how can we improve the targeted therapy, and we did an earlier study where we actually combined with the earlier generations BRAF and inhibitors with with irinotecan and we had patients that their disease responded. So we gave chemo, EGFR and BRAF inhibition, and not just BRAF and EGFR alone. And so the question was, okay, we had responders, and it was working, and we had some patients that were really generous, and they said we will be willing to do a biopsy so that you can take tissue out from my tumor and you can study it. And so we’re so thankful for the patient’s contribution to not only enrolling in research, but to support things like this. But what that allowed us to do is say, Okay, I’m going to take that piece of tumor, I’m going to take it back to the mice, just like you saw, and I’m going to grow that patient’s tumor on the flank of the mouse, and I’m going to propagate that tumor, so I can treat many different mice, and then I can treat that tumor with the targeted therapy alone, the chemotherapy alone, or the combination. And then ask the question like, if that model works, what was that the patient was responding to? They got three drugs. But did they need all three? Maybe you only needed two in this or our other one. And we were really intrigued. And I just showed three examples here, where you want to see things kind of going below the lines, the lower, the better, smaller the tumors here. And what we found was that the targeted therapy slowed growth. Chemo slowed growth, in two of the models, but you only really got regressions and things shrinking down when you did the combination. And so that was a really important finding for us. Now it turned out because I wanted to show all the data that one on the far right here. What that said is, you know what? The targeted therapy didn’t do anything. It was all chemotherapy doing the heavy lifting here, we would predict in this patient. And so we kind of expanded that out and looked at some really resistant tumors and showed that indeed, that when you combine this, we were using a full theory regimen, so irinotecan and 5FU, that you could really get these synergies and really suggesting that there is opportunities to improve outcomes and the durability through this. So that kind concept, as well as the idea to say, well, let’s try to get this into more patients sooner, really led to the idea of the BREAKWATER study.

Dr. Kopetz 15:06
And so what did we do? Well, designed this study, randomized 637, patients to a standard of care without targeted therapy at BRAF. Patients could still get BRAF and EGFR in second or third line because it was approved. But the idea is to start with standard chemotherapy in the control arm. Or EC, encorafenib, cetuximab and FOLFOX or EC alone as a kind of a third arm. And so we were trying to gather some data, like, do you need the chemotherapy there? And then we’re looking at progression free survival, response rate. Here’s the characteristics of the patients enrolled, and this really reflects a bit of what we see in kind of general practice here. So what do we see? So remember, we said we want to improve response rate and durability. So first thing we said is, let’s look at response rate. And indeed, if you look at the blue bar with the EC and FOLFOX now we had two thirds of patients approximately responding to the therapy, meaning the tumor shrank down by 50% or more, versus 37% with the standard of care therapy, a little more than a third. And that this was durable, and that was encouraging. So when we get a response and there was some increased durability, now one of the terms that we use to measure durability is progression free survival, as you’re likely aware. And so we looked at that progression free survival curve, what we saw was an improvement in progression free survival of seven to 12 months.

Dr. Kopetz 16:42
So what does that mean? I’m sure many of you are well versed in these curves, but I thought it was always worth to do a little bit of a primer about what this means. These are a measure of any time point along the way, the number of patients that are still receiving therapy and have not progressed. So we can look at this, and for example, we can see about it at six months time frame here, that 60% of patients were still on therapy and were free of progression. And over time, more patients progress, and you can see the curve coming down. And so by the time you get to 12 months here in the control arm, about only 30% of patients were no longer progressing. So we’ll say, Okay, that’s good. How do we describe the curves here? And so you’ll hear this term median, right? Well, what does that mean? Well, it means, really at that 50%, meaning half the patients progress before, half the patients progress after that time point. So the median here we use as our estimate. And you can see, you know, the median is a little over six months 7.1 exactly here in the control arm, but that median is closer to 12.8 months here in the in the experimental arm. Now we can use these numbers and now start to compare across different settings, BRAF has always been a tough or has not always felt to respond well to standard chemotherapy. FOLFOX, FOLFIRI alone, even with Bevacizumab, usually get like 6-7 months. Now, while the non BRAF colorectal cancer is usually around 10 months or, maybe 11 months. So this is really striking, because we’ve taken a tumor that had well worse than your average outcomes, and now with this regimen, now we have a median progression free survival that looks better than all the other tumor types, subtypes of colorectal cancer out there. So it’s a really big kind of chip. And I think, as we mentioned before, we also see this, this tail, and this gets a little noisy because we don’t have as long a follow up yet, but this idea of, this flattening here, and about a third of patients, even at two years, are kind of still ongoing, and that’s a much higher tail, as we say. So, the idea that there’s a subset of patients that we don’t fully understand why, but they get a really durable, prolonged outcome from this. So we need to know more. We need to make more people like that. So that’s one of our goals.

Dr. Kopetz 19:48
All right. Now we talked about, there’s a third arm, if you recall, right where encorafenib, cetuximab was used alone, no chemotherapy. And here’s the orange line for the encorafenib Cetuximab alone. So didn’t do better than the standard chemotherapy, but didn’t do worse either. So it is, it kind of is in that middle ground. The kind of interpretation of this is, you know what this is, typically the the EC alone is better tolerated than FOLFOX. If there’s a patient that is maybe not the best candidate for FOLFOX, can’t really tolerate it well, for whatever reason, there’s an option to at least do the EC alone, and that may be better than than other options for that unique case. But for most patients, we think that that is EC and FOLFOX should be there. Now, progression free survival is important, but remember I mentioned that well, the control arm could go on and they could get BRAF and EGFR right, and so is this just shifting when things are and if that’s the case, for what we really care about is, can patients live longer with this regimen?

Dr. Kopetz 21:08
And so that’s the overall survival– very similar. We use this median to say half of patients now, in this case, are living longer and half are living shorter than that estimate. But what we saw was that the standard of care about 15 months– what we expect on average, but that we’re able to double that number. So really, a doubling of overall survival is a really, a compelling number to see. And so now getting medium survivals that are much, much higher. What about that third arm? Kind of fell right in between. So, it’s not an unreasonable consideration to kind of start with that, but still not as good as the EC and FOLFOX alone.

Dr. Kopetz 21:59
Okay, thanks doc for showing all those complex slides. What does it really mean? So, here’s kind of that graphic summary, thanks to nano banana. I’ll say a little AI generated one. But what you can see here is that really, progression free survival, you’re reducing that risk of progression. And then that survival time is, in essence doubled, going from 15 to 30 months. Those are the kind of the key takeaways. Now, what about side effects here? Most frequent side effects are shown here, in this figure. And what we can see is that nausea, diarrhea, those kind of things that we normally think about with the chemotherapy, is about the same between these and that the real difference here is kind of in some of the BRAF specific toxicities. In this case, it’s looking at arthralgia and rash. So you can see that the combination of with encorafenib+ cetuximab can generate some rash. We use grading systems to grade one two, which means a more mild rash and arthralgia, and still impact quality of life. And so it’s something that we manage and work through with patients.

Dr. Kopetz 23:35
Now, one of the questions that’s come up is like, well, is this better than if we did really intense chemotherapy at the beginning. And so there are regimens where we put FOLFOX and combined with irinotecan and what we call the triplet regimen. And so this was just a bit of an aside to say that we looked at what patients could have gotten some of these more intense regimens, and then looked at some of the survival here. And the bottom line is that it didn’t matter in the control arm, if you use really intense chemotherapy that that really you got the best survival with the with the EC FOLFOX. Now we’ve been talking a lot about FOLFOX, and this is data from last year. So, but what about alternates? So we like our acronyms as we know and so FOLFOX, of course, is a 5FU oxaliplatin. Oxaliplatin is the neuropathy one. There’s the FOLFIRI, it is irinotecan and 5FU. And there are situations where patients, just may not be best served with FOLFOX. They may have had prior oxaliplatin exposure, may have had an early stage tumors, resected, got adjuvant FOLFOX, for example, and then the disease recurred later. Or maybe patients that have kind of diabetic neuropathy, for example, where they have other reasons for nerve damage. And then sometimes it’s just a lot of providers are looking at the side effect profile and just saying, you know, I just think FOLFIRI is a better choice in general to start with. And so all these things now to the credit of the sponsoring company for BREAKWATER they heard us when we said, we really want to have more options for our patients. And we want to generate data as well with with FOLFIRI. Right now, most companies, I would say don’t really do two studies to look at the same thing, but they heard us and and agreed to run this smaller study. So remember, before we’re looking at over 600, here we have like, 140 something patients.

Dr. Kopetz 26:02
And now this is just after the BREAKWATER finished enrolling. We then opened and enrolled this one. Endpoints, response, rate, side effects, very similar here. There was, interestingly less arthralgia and rash in this one, not sure I fully understand it, but it was that’s kind of what we saw there, but really low rates of grade three toxicities in general. So didn’t add much in terms of toxicity. Here again, we saw very similar, about two thirds of patients responding versus about 39% of the control arm there. So encouraging that there’s that much higher response rate, even with a FOLFIRI backbone. And overall survival, really early, we will have some updated data we’ll be sharing in Jun. But that this kind of really nice early separation of the curves that were similar in magnitude to what we saw before. So that’s great. It tells us FOLFOX and EC can be a backbone. FOLFIRI and EC can be a backbone.

Dr. Kopetz 27:15
So wanted to spend maybe the last few minutes and just talk a little philosophically, and that little more of the science here, right? So one of the questions is, wow, we’re doubling overall survival, not by bringing a new drug in, but by taking a drug that we would normally give in second and third line, and now combining it with our first line regimen. What gives? Yes, maybe it’s better, but why a doubling in overall survival? And, I shared some of that kind of concepts pre clinically, and I didn’t get into a lot of the deep science that led us to think that this could really work. But one way to really think about this is that when we give chemotherapy alone, and these are completely arbitrary numbers. We give chemotherapy alone, there may be 10 different ways that the tumor cells can develop resistance. When we give BRAF EGFR inhibition, again, maybe 10 different ways that resistance can develop, including acquisition of KRAS and NRAS secondary mutations, for example, which are really well described and and I didn’t present that data, but this idea that other mutations can develop that can reactivate the pathway. Now the concept, though, is that a new KRAS mutation is not going to make them resistant to FOLFIRI, right? And likewise, some of the resistance mechanisms to the chemotherapy may be blocked by BRAF and EGFR. And so it’s not that the cancer can’t find a way to develop resistance. Gosh, it almost always does, but we’re just making it much, much harder. So the idea is that the shared pathways of resistance are constrained, so that’s this lower level of number of mutation or resistance pathways that can occur. So by putting them together, you really make the tumor work hard to find some mechanism that will result in resistance to the chemo and resistance to the targeted therapy together.

Dr. Kopetz 29:25
Now it’s a great theory. Did we actually see any data about that? Like is what we have there? So I mentioned that, and we did a lot of work and published papers around different mechanisms of resistance to BRAF and EGFR when it’s given alone. These secondary mutations are kind of the key ones that we see. So what we did is presented some of the data on the CT DNA, so you can use circulating tumor DNA to explore the mechanisms of resistance there. And what we showed was that by month seven in the targeted therapy arms of the of the BREAKWATER study that EC alone, about 38% of patients already had these resistance mutations that were developed and evident. They developed KRAS variants, NRAS, MAP2K1, which is downstream, amplifications like MET or BRAF exon deletions, all these things that have been shown. But when we combine it with chemotherapy, now there’s no selective pressure, really, to generate that the chemo can keep the cancer from growing, even with those. And only 6% of patients at month 7 in the combination arm had that mechanism of resistance. And you can see, even at the end of study, after prolonged treatment, that we were seeing much lower rates of these secondary alterations. So we’re trying to and this is really where we are at the frontier of trying to understand this, is kind of the idea to say, how can we constrain the mechanisms of resistance. What are those two remaining shared mechanisms that are allowing the cancers to evade? We don’t think they’re genomic. They’re not acquiring second mutations, necessarily, that’s driving this, but there’s some tumor plasticity, state changes that are occurring. These are kind of the terms you’re hearing in oncology field now about what’s the plasticity of the tumor, like, how is it adapting to these different states? So stay tuned. But this is really where we’re working on it. We’re trying to nip these remaining things in the bud.

Dr. Kopetz 31:42
Okay, so adaptive resistance, you got your primer on homeostasis, right? There’ll be a test later on the homeostatic regulations, but this combination of BRAF and EGFR blunts that. It is a standard of care, but that the chemotherapy combinations have compelling biologic rationale, as well as the really now strong clinical data, doubling overall survival. And so that we do think that EC and FOLFOX, and I would say EC and FOLFIRI as well, are a new standard of care in the US and and I think this is even when you compare to the really intense chemotherapy there. The key for all of this is that in order to actually act early and take advantage of all this great biology, you got to know what your molecular subtype is, and so this is why one of the key things about this is molecular testing early. Don’t wait till second or third line of treatment to really start to act on the molecular subtype of your tumor. It’s really important for patients to understand their molecular subtype at diagnosis and act on it, if there’s ways to act on it, and so that’s really a challenge for us to make sure we’re communicating that to oncologists throughout the US and throughout the world. And I think increasingly we’re seeing that most, most providers now, are getting that molecular testing done and and making treatment decisions early. And just want to end by thanking the patients first and foremost. We are always trying to do better, and this is always bittersweet. When we see advances, because we see progress, but we also recognize how far we still have to go. And I just wanted to thank the the patients in the past who really participated wholeheartedly and in these, this clinical trials and the patients in the future that are still upcoming, and where we hope we’ll have better therapies to offer. So with that, thanks and happy to take some questions.

Manju George 33:57
Okay, thank you, Dr. Kopetz, that was an amazing presentation. As always, you take us through hard concepts, explaining them very simply. So thank you very much. So with questions, in COLONTOWN, people have posted some questions, and I had emailed you them, so maybe we can start with those, f you’re okay,

Dr. Kopetz 34:20
Sure, absolutely.

Manju George 34:22
Yeah. So the first question is, of all the patients on the different E plus C combinations, what’s the longest time in your experience someone has been on it? And the second part of it is, what do you think is the reason? Like, what have we learned?

Dr. Kopetz 34:39
Yeah, great question. I don’t know the answer yet about why. So we’ve had some patients that are now four years or so, on some of these combinations. The front line, chemo, plus a lot of times, what we’ll do is just continue the 5FU and encorafenib, cetuximab, and we’ve had patients on that two and a half years going on three so that really there is a subset of patients who can do really well with it. We don’t understand, we don’t know, if the tumor has some biology that’s called adaptive mutability, which is how the tumors change, in essence, they kind of turn themselves in and increase the rates of their secondary mutations, so that this is one of the ways the tumors can adapt. They start making more mutations. Each time they divide, they have more mutations. And the hope is they, imputing a lot of of intent to them, but the idea is that they, as they develop a lot more mutations they can find, stumble across other mechanisms of resistance. So there is some hint, maybe, that some of these really patients with really long duration don’t engage this adaptive mutability pathway, so their tumors don’t use this as a mechanism. But that’s I think, work that we still have to sort out.

Manju George 36:24
Okay, thank you. The next question is, what advice do you have for someone who was on FOLFOX plus E plus C and is now on maintenance 5FU plus E plus C. Is adding irinotecan to this at progression a good idea. If not, what else can they get?

Dr. Kopetz 36:44
Yeah, great question. So one point, not the question, is that when there’s this inclination, no one likes the pump, I get it, right? There is this inclination and maintenance to say, well, EC is working, what if we just stopped the pump as well as the oxaliplatin, right? And I really, I think that biology suggests that you need that 5FU, so I would say, try to maintain the 5FU now, the great question was, should we add more on to that? We just don’t know, to be frank, on this, I think, there is this sense that trying to put something into it before progression may not be the best approach, but we honestly just don’t have a good sense of this yet. I think we have tried it in some patients where you’ll start to see things kind of creep up. It’s not that full resistance is developed to 5FU and encorafenib Cetuximab, we either add the oxaliplatin in, or, if there’s neuropathy, add in the irinotecan, alternatively, so and that can work. The question is, is that better than than using irinitecan later, we just don’t know.

Manju George 38:07
For someone with a sustained response to E plus C and E plus C plus FOLFOX who is now progressing, what’s the best option next? Yeah, similar question.

Dr. Kopetz 38:19
Yeah. Great question. So there’s a few approaches there. There are studies to say, remember we talked about that these tumors are really dependent on this MAP kinase pathway. So there one approach is to say, well, let’s double down on this inhibition. And there is another protein downstream called ERK and so there’s a next generation ERK inhibitor. We tried ERK once, but that was really intermittent ERK inhibition, and that didn’t work. For the officianados, that had been tried once, but we think there maybe a better inhibitor. So there’s a study ongoing to double down on that pathway inhibition. The other is, we talked a little bit about the plasticity and the state changes. And so we have a study through the ETCTN or the NCI, federal government sponsored study, where we’re trying to use an epigenetic modifier. It’s called a BET inhibitor, but the idea is that it really inhibit some of these state changes. And so that’s a study that’s enrolling right now. And then there are studies to kind of ask questions about, well, what if you go and you do something else altogether, right? Like, if you haven’t gotten FOLFIRI, maybe you go and get FOLFIRI, you give it a break from EC. And what we see is that a lot of times, the tumors will rewire in order to evade the FOLFIRI. Sometimes they’ll shift back into a state that becomes EC sensitive. And so this idea to say, can you do what we call a re challenge, which is do something separate from MAP kinase targeting, and then come back and hit again with the MAP kinase. We see benefits with that with the EGFR inhibitors. This is a RAS RAF, wild type tumors that you can inhibit EGFR and then take a break and then come back and do EGFR alone. So that’s another strategy, but I think there still is a lot more that we can do.

Manju George 40:26
Okay, okay, thank you. So I think that brings us to the next question where people have asked, Can the BEACON and BREAKWATER regimens be reused? And then, if yes, like with EGFR inhibitor, we say, like, four to six months. Do you have any idea what’s the break that people would need?

Dr. Kopetz 40:48
Yeah, we don’t, to be frank, I think, we would typically check Ct DNA to make sure there’s no secondary mutations. All those are uncommon after BREAKWATER. But can be seen. So just make sure those have gone away. Because if you can still see a KRAS mutation present on CT DNA, then maybe it’s not long enough. You give it a little more time. But you’re right, we kind of think about, four month or so time away. It may be enough to have the tumor resensitize,

Manju George 41:25
okay, okay. And then the next question is, for people who miss the first line option of breakwater, what’s your advice on using this in second line or third line?

Dr. Kopetz 41:36
Yeah, great question. I think it does give us confidence that, bringing EC in combination with chemotherapy may be better than EC alone. So the the SWOG study that I showed the one with then looked at and second or third line looked at, in essence, BRAF, EGFR, with irinotecan, and that showed activity. And so I think if, for example, you got FOLFOX alone, I think there’s a rationale to say that you could do an EC, irinotecan, or EC FOLFIRI, in a second line setting. In that sense, all we have are these kind of cross trial comparisons to suggest, so in it, and we don’t have that, what we say level one, randomized data, but that tends to be my practice in those situations.

Manju George 42:35
Okay, thank you so much. The next question is, what’s the status of the E plus C Nivo trial. Do you have some updates?

Dr. Kopetz 42:44
Yes, so we’re going to be so that is a small kind of phase II study that is trying to build on the EC nivo single arm data there. The hope is there’s a subset of patients that may be deriving benefits from the nivo. So that one we should be able to present at ASCO this year. So we’ll have some of that that it was small the control arm was I think less than 30 patients there, but we’ll have that data.

Manju George 43:22
Okay, okay, thank you. So the next is, what is in line next, in terms of new regimens, now that breakwater is done, where’s the field heading? What’s cooking in your lab?

Dr. Kopetz 43:36
Yeah. So we’re really interested in the these epigenetic state, inhibition, I think the the idea to say that, that there’s a subset of cells that are kind of are adapting in some way to evade the those therapies. And if we can understand what those dynamic changes are, then we can potentially, kind of come in with inhibition and and look at different ways, the different vulnerabilities that may come up now. These can take the form of, potentially, thinking about ways to combine it initially, like, how do you extend duration when combination? Or can you understand these paths of resistance and then, kind of treat upon progression? So we’re trying to explore both ways.

Manju George 44:39
Okay, okay, thank you. So I’m done with those questions, and then here we have some Q and A questions. So those who are listening, if you have more questions, please add them in there. So the first question is, if there is a chemo for life patient, is there an argument to be made to do standard of care followed by E plus C or vice versa to prolong longevity rather than use the efficacy of both treatments together?

Dr. Kopetz 45:06
Yeah, no, that’s a, I mean, that is, that’s the angst, and I think that’s what surprises us about BREAKWATER. So the control arm, even if we limit to those patients who and the majority of patients, had access to BRAF, EGFR and second line in the control. So this was that study, in essence, the say standard of care chemo, followed by EC. How do patients live longer than when you put it all together? And the short answer is, it really matters, when you put them all together, that there’s a true synergy. It’s not kind of a one plus one equals two, but you’re getting much more. We think it’s because of and I know this looks like this question was like part way through my lecture, so hopefully I answered it with the kind of explanation of the how we’re trying to constrain the mechanisms of resistance. But I really think the data suggests that in this case, at least, it’s not about stringing it out, but really about bringing the best regimen together at the beginning.

Manju George 46:09
Okay, thank you. The next question is for can this drug regimen be used for patients without a BRAF mutation?

Dr. Kopetz 46:19
Yeah, great question that the short answer is, not, at the moment, there are, there been kind of different areas to explore in this space to kind of think through how you know what BRAF can do. One little bit of an aside is that there has been a recognition that the skin toxicity of the BRAF and EGFR combination is much less than you’d expect with EGFR alone. So the Cetuximab rash kind of acneform, kind of face trunk, but when we give the BRAF inhibitor, it’s actually less. They actually have much less, patients still have some skin rash, but it is substantially less so one of the areas has been like, Okay, well, could you use BRAF inhibitor to try to modulate some of that toxicity? But now, instead of taking it as encorafenib, as a pill trying to reduce that toxicity, there’s a company that’s actually made an essence of BRAF inhibitor skin cream. And so the idea is, could you just put a BRAF inhibitor skin cream on and treat the EGFR rash there? So that’s one kind of creative way where the BRAF inhibitors are being utilized there and I think in some extent, these drugs were engineered to be more potent against the mutated form of the protein. So that mutation is not there, it makes it a little harder to kind of utilize it, although I still think there’s some creative opportunities there, we just have not fully explored.

Manju George 48:07
okay, but in general, like to as a line of treatment for somebody without a BRAF mutation. You don’t generally recommend it?

Dr. Kopetz 48:16
yes, I should just be clear with that. No, we shouldn’t use it. There’s really no data about using encorafenib for anything but that BRAF V 600 E. Now the corollaries we also, I talked a little bit at the beginning about what about other BRAF mutations? And I think the data really has not.. we’ve tried for some of them. There’s different classes as we talk about them and characterize them, we tried these in different ones, and they have not provided benefits. So I know it’s tempting, because sometimes you say, Well, my report says a BRAF mutation, but they behave very differently than the V600E.

Manju George 48:51
Okay, thank you, for those who can only tolerate E plus C alone. Can it be continued once progression occurs, will it slow growth? Does it have to be stopped once progression occurs?

Dr. Kopetz 49:06
Yeah, so good question. We don’t fully understand all the dynamics of it. What we can say is that when we’re doing EC alone, that the mechanisms of resistance tend to be genomic, and kind of a get acquired pretty robustly. So we do think in those settings that kind of stopping the EC is beneficial, and that doesn’t necessarily result in any kind of progression or that continuing, it doesn’t result in more inhibition of the growth.

Manju George 49:46
Okay, so the next couple of questions, like in the BREAKWATER trial, do you have some data on whether people were able to get to surgery to resectability?

Dr. Kopetz 49:57
Right, yeah. So we do. There is some data suggesting, perhaps, that more patients may be able to get to surgery. We just, we need to kind of get that data little cleaner. It’s been a complex area, because there were several years because of the biology of BRAF and the outcomes, surgeons had just said, I’m not going to take a patient with a BRAF mutation to surgery. I just don’t think that it’s kind of beneficial in that regard. I think now the field has shifted a little bit, and people are more willing to do that, and we are seeing that, we are seeing anecdotally even, that some patients that go to the or for resection of their metastatic disease can have complete pathologic responses, which is just really extreme, great response to the treatment.

Manju George 50:53
Okay, okay. And then the next thing is do you have some breakdown of the people on BREAKWATER like, what kind of mets? I think you had the table, right? How many people had peritoneal Mets, and how did they respond?

Dr. Kopetz 51:09
Yeah, we don’t have breakdown by sites. It’s a great question. And so that we don’t have that data to say, you know that this group of patients perform better than the others. We do have in some of our waterfall plots, we can try to tease that out by eye, and then there are kind of we call forest plots, that have looked at that. The numbers are just small, but it looks like, in general, they’re performing better, but we don’t have, like, a breakout of response rate, for example, by peritoneal mets in particular.

Manju George 51:50
Okay, so next question is, what trial options are available for BRAF patients after BREAKWATER, you mentioned the BET inhibitor, right? Like, what else?

Dr. Kopetz 52:02
ERK and the rechallenge are the main ones that are out there right now being explored.

Manju George 52:08
Okay, the next question is, can you speak to any BRAF targeted therapies that are in the pipeline that are expected soon?

Dr. Kopetz 52:15
Yeah, so there’s work on on degraders. So degraders are one space. The idea is, instead of inhibiting it, can you grab the BRAF and just pull it and destroy it? So just kind of chew it up. Now, the cell remakes it, so you have to keep grabbing the BRAF and destroying it. So that’s kind of one of them. There’s been other areas to try to improve upon them. Kind of these next generation BRAF inhibitors that has some characteristics about how the different BRAF and CRAF and ARAF all kind of linked together. So these other family members, it’s B, because there’s an A, B and C, by the way, in case you want to know where the B came from. So there’s these other family members in the RAF family, how they interact. So there are some smart chemists out there trying to sort that out. We don’t necessarily know that they’re going to be better than what we have right now.

Manju George 53:19
Okay, okay. And then what about immunotherapy combinations? Is anything new being tested?

Dr. Kopetz 53:26
Yes, we have the PD-1. And that was done when we are looking back in the preclinical models. And again, always trying to learn everything we can and thinking about other strategies. The intriguing thing is that it really looks like that more than PD-1 is CTLA-4 that is the one that’s driving a lot of benefit, which is a kind of a common theme we’re seeing in in colorectal in general. That PD-1 is okay, but CTLA-4, really, is kind of what induces a bit of greater responses. So there is some intriguing data to say if we had the SWOG study that the encorafenib, cetux nivo study, would a CTLA-4 be better than that. So, these are things that we just have to try to prioritize the questions that we ask and try to understand if that’s going to be better. The other is vaccines. So there are some. There’s been a lot of push. Elicio, for example, the company that’s been generating K RAS vaccines for pancreatic cancer and then for colon and many others have been whispering in their ear to say, think about BRAF. Think about BRAF. So that’s on their radar. And so the hope is that maybe there could be some vaccine strategies to to kind of follow since we are talking about a single point mutation. So it’s kind of well aligned for that.

Manju George 55:06
OK. Next question is, are we close to a CAR-T, options for BRAF V600E?

Dr. Kopetz 55:15
Great question. We don’t see anything. I don’t know I say close, I mean, I think CAR- T’s have just been tough to try to find the cells that can get into the tumor there. So, so I would say we still have a little bit of way to go to even get CAR- T’s, in general, in solid tumors working. But we’re starting to see some, some progress. The difficulty is that you know when you have a single point mutation, that it’s getting expressed by a TCR, and these are really more like TCR TIL therapies where you’re trying to target the BRAF itself is that you’re looking for just a single mutation, and sometimes it’s hard for the immune system to tease out, like, really small differences in there. A lot of the CAR- T options are targeting completely separate proteins that are on the surface of the tumors. So the CAR-T’s are coming in and binding something on the surface that may not be related to V600E, so maybe that some of the CAR- T therapies being developed can be applied to BRAF population, but may not be BRAF specific.

Manju George 56:33
Okay, okay. And then in the BREAKWATER results, do you see a difference in patients who are younger with the BRAF mutation versus the older, right sided tumors. Is there a difference in outcomes?

Dr. Kopetz 56:47
Yeah, so that we have some data on early onset BRAF that says that they are deriving benefit from the therapy just as well as patients that are average age of onset. So I think the you know some subtle differences, but that there are some distinctions. Now, BRAF, in general, tends to be associated with MSI high in later onset BRAF, so I guess the caveat is that early onset less likely to have a BRAF associated with MSI high more likely to be MSS, but within the MSS BRAF, they tend to do the same as average age.

Manju George 57:36
Okay, okay. And then this is my other favorite question. So, with the pharmacogenomics testing, because we are combining E plus C with FOLFOX or FOLFIRI. Do you think that there can be more tailoring of the chemo part of the regimen so that people can stay on it longer? Are there any efforts to do that?

Dr. Kopetz 58:01
So, you know, we’re still, I would say, nascent in our understanding of pharmacogenomics. We know for irinotecan, UGT1A1, there’s some older data about the utility of that to kind of tailor things that really is more relevant for higher dose. irinotecan, kind of saturates a lot of the metabolism transporters, for the doses that we’re giving every two weeks, it’s kind of less relevant. So there has been some discussion like, Well, gosh, could you increase the dose of irinotecan in a patient that may have just the right pharmacogenomic subtype there, and I think that there hasn’t been a lot of work being done on kind of dose escalating the chemotherapy based on pharmacogenomics. But certainly a possibility. The problem is we don’t yet have pharmacogenomics for why the patients are responding to BRAF, for example, so we don’t have good answers there.

Manju George 59:03
Okay, okay, I think we are at time. And thank you so much. This was an incredibly informative talk, and I hope we can have you back when you have new trials and give a talk.

Dr. Kopetz 59:18
Yeah, always a delight.

Manju George 59:20
Okay, thank you. Thanks to everyone who was able to join. And as I said before, a recording of the video will be posted in COLONTOWN University in about two weeks. Thanks. Thank you, everyone. Thanks. Bye. Dr. Kopetz, bye.

DocTalk
2026
Dr. Kopetz
MSS
Trials
Doc Talks

In this DocTalk, Dr. Scott Kopetz, MD Anderson Cancer Center, discusses the much awaited results of the FOLFIRI + Encorafenib + Cetuximab arm of this 1L trial for patients with BRAF V600E–mutated metastatic colorectal cancer. Recorded in February, 2026.

Recommended Resources

Research article
Encorafenib, cetuximab and chemotherapy in BRAF-mutant colorectal cancer: a randomized phase 3 trial
Scott Kopetz | Nature Medicine
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BRAF Poster

BRAF Poster

DocTalk
2025
Dr. Maddalena

Dr. Giulia Maddalena discusses her ASCO-GI 25 poster titled “Challenges in patient selection for surgical options in V600E BRAF-mutated metastatic colorectal cancer.” Recorded in February, 2025.

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN. Today, we are doing a slightly different format. We have Dr Maddelina here with us, and she is going to go over her ASCO GI 25 poster, Dr Maddelina, welcome.

Dr. Giulia Maddelena 0:24
Thank you so much for this introduction. I’m back in Italy now. I’m Giulia Maddalena. I spent the last two years at MD Anderson with Dr Kopetz, great mentor, and I’m now back to Italy, in clinic in Istituto oncologica Veneto in Padua, and I’m briefly presenting today cooperation between the two institution with this project about V600E BRAF mutated metastatic colorectal cancer, subgroup of patients. So my poster presentation at ASCO GI was entitled “Challenges in patient selection for surgical option in the V600E BRAF mutated metastatic colorectal cancer”. As we know, metastatic colorectal cancer, there are different mutational subgroups of disease, and in particular, V600E BRAF mutated patients are about 10% of the entire metastatic coloreactal cancer patients, and this is associated with poor prognosis, but also it’s been studied, and it’s been noted that this is a very heterogeneous subgroup of patients. So not every history is the same, and we know that a great improvement in the treatment of colorectal cancer is from surgery of metastatic disease. So the integration of surgery, along with systemic treatment, really improved the outcome for our patients. So while many patients with these mutations have a very aggressive disease and unfortunately, never have the chance to undergo surgery, it is not clear how to navigate the clinical heterogeneity, and if we, as physicians, if we are able to select better patients that may benefit the most from the surgery on metastatic disease.

Dr. Giulia Maddelena 2:57
So we collected 71 cases of V600E BRAF mutated colorectal cancer patients between the two institutions. And we tried to evaluate outcomes according to clinicopathological features such as sex, such as histology, differentiation of the tumor, site of metastasis, such as liver or peritoneum, and sideness of the primary tumor. In the entire cohort, the medium relapse free survival was about 7.9 months after the surgery, and we were not able to highlight clinico pathological variables that may help in patient selection. The only element that was clearly associated with poorer outcome was R-1 resection in the pathological report. It means when in the pathological report, some cells are detected really close to the margin of resection. This is helpful, because it adds information in the prognosis evaluation and clinical management. However, it is not something that we can know before surgery. So to the point of the project, how can we better select those patients who may benefit the most, we don’t have an answer yet. This was a retrospective collection. Therefore it is supposed to be hypothesis generating. And basically the take home message is that the heterogeneity of the subgroup of patients deserve a better evaluation of every single case and when surgical rejection, is an option, at least the discussion is worth it to surgery. I really hope this may help some patients to understand their treatment management, and I’m happy to take any questions.

Manju George 5:28
Okay, thank you very much. Dr Maddelina That this was very helpful. So one of the things that I was interested to know is that, what kind of treatments did these patients get, did they get targeted therapy?

Dr. Giulia Maddelena 5:48
Because this is a limited subgroup of patients, this comes from also few years ago when targeted treatment was not available. Therefore, this is a very important point, and thank you for the question, and it is something that we really need to look at, but the information is not available right now.

Manju George 6:15
Okay, thank you very much. So it was very informative that you said that even though your goal was to find out something that would help, learn about the heterogeneity, yeah, it is after the results that the main or the only thing that was different was clean margins versus, R-1 resection status, right? So perhaps, from a patient perspective, looking at it like somebody with a higher chance of getting to an R0 resection may have a better chance of having longer recurrence free survival. Would that be okay to interpret it like that?

Dr. Giulia Maddelena 7:00
Yes, I believe it’s a good interpretation to the point is that, not always what we see in a CT scan is what a surgeon then detect in the OR. So, of course, the entire evaluation has to be to the point to get a radicality, but we really know that after the surgery.

Manju George 7:32
Okay, yeah, thank you. That’s a great point, because you mentioned you’re looking at patients with liver disease and peritoneal mets, and sometimes peritoneal mets, only after the surgeon opens the patient up can they have a better understanding of the extent of disease. So in the end, what you’re really saying is that if you are able to get to patients early in the disease with limited metastatic disease, which are surgically resectable to get clean margins, those patients might have better outcomes, right? So because among patients, the general opinion is that somebody with a BRAF mutation, they are usually not, when you go to a surgeon, they are usually the people who are told that you can’t have surgery because these have poor outcomes. And there is also the conversation that because the disease so aggressive, the physical issues with or the time off treatment while the patient is having surgery, in recovery, that also has to be factored in. So we usually hear that, these are patients who are told no surgery for you. So this information that you have from this perspective, so the study is important in showing that there is a subset of patients who may benefit from having surgery, and learning more about that subset would help greatly, right?

Dr. Giulia Maddelena 9:01
Yes, I agree with you. Unfortunately, for this subgroup of patients, surgery is not always an option, even to the discussion of the surgery, right? But for those patients with a more indolent disease, and this is something that we can see along the treatment plan and how things are going, how the patient is feeling, what’s the response to the treatment, even if it’s not, we still need to, provide data and evaluate this integration with the treatment, especially with targeted treatment. But for those patients with a more indolent disease, a discussion, and a limited amount a limited disease burden, a discussion could be worth it.

Manju George 9:55
Okay, thank you very much. This is very helpful.

DocTalk
2025
Dr. Maddalena

Dr. Giulia Maddalena discusses her ASCO-GI 25 poster titled “Challenges in patient selection for surgical options in V600E BRAF-mutated metastatic colorectal cancer.” Recorded in February, 2025.

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Early-stage BRAF V600E MSS colon cancer — What’s next after adjuvant treatment

Early-stage BRAF V600E MSS colon cancer: What’s next after adjuvant treatment

DocTalk
2024
Dr. Yaeger
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In this DocTalk, Dr. Rona Yaeger from Memorial Sloan Kettering discusses how to approach early-stage BRAFV600E MSS colon cancer following adjuvant treatment with PALTOWN Scientific Director Dr. Manju George. Recorded in June, 2024.

Manju George  0:00 
Hello, everyone. Welcome to DocTalks. I’m Dr. Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN. Today we have Dr. Rona Yaeger from Memorial Sloan Kettering Cancer Center to talk to us about what’s next after adjuvant treatment for early stage BRAF mutated MSS colon cancer. But before we start, I want to ask Dr. Yaeger how she got interested in GI oncology,  and in doing the kind of work that she does. Welcome.

Dr. Rona Yaeger  0:33 
Manju, thank you for having me, it’s a pleasure to be here. Like you mentioned, I’m very lucky that I get to focus on an area that interests me a lot. I work on colorectal cancer and targeted therapies. I find genetics very interesting. And when I was younger, and I saw the way you could see how colorectal cancer develops from polyps, I thought this is really an interesting area to work. And I like the relationships we have with patients, where I have many patients I’ve treated for many years, and have a very close relationship. So I felt like this was the right area for me. I see patients one day a week. And then I run clinical trials and also have a wet lab. So I have a nice combination of kind of all the components. But the actual work we do is very focused on colorectal cancer and targeted therapies. So thank you for having me and give me the chance to give an update on what’s next, potentially after adjuvant therapy for colon cancer with a BRAF V600E mutation that’s microsatellite stable.

Dr. Rona Yaeger  1:40 
So I wanted to just start off by talking about how we treat early stage colon cancer, and what we think of when we see these tumors. So this is a slide kind of showing the current paradigm of treatment. So initially, patients are diagnosed either they will have a screening colonoscopy, and something might be found in the colon, or they may have symptoms that lead to an evaluation with a colonoscopy that can show mass within the colon that is biopsied and comes back as cancer. The next step is to be sure there’s no evidence of spread. So patients have scans to look at the body, usually a CT scan to make sure there’s no evidence of spread. And if there isn’t, and the colon tumor is limited, the next stage is what we call a resection where we remove the cancer. So here you can see within the bowel, there is an abnormality that is removed, and then the bowel is reconnected. Following that, the tumor that is removed is studied under the microscope by pathologists who generate a report describing what they see. And that’s what’s used for risk assessment. So patients who have a tumor that’s limited to the colon has no evidence of distance spread are early stage. And if the tumor has higher risk features, such as having lymph nodes involved, involving the full thickness of the bowel wall, we often suggest additional treatment with chemotherapy with a goal to reduce the risk of recurrence. And if patients don’t have this features, they are then observed. And we watched patients for a total of five years, after which the chance of recurrence is so low that we say that’s it, you’re cured and you don’t need to be followed so closely. So this is our current paradigm. And we know that most patients are cured following this current paradigm, but there are some patients who still recur, even despite chemotherapy. So this brings up the question, is there anything more to do for those patients?

Dr. Rona Yaeger  3:40 
So my next slide is looking at colorectal cancer both in advanced disease and early stage disease, where we now see that it’s particularly when we think of advanced disease, the colorectal cancer isn’t a single cancer. We can define different subsets of patients and tailor treatment based on how the cancer is developed. So the first group that I want to point out is this MSI high. Patients who have tumors or MSI high either have a genetic predisposition, or they have a colon tumor that has evolved in such a way that it feeds into a similar pathway. And MSI, what does that mean? Basically, when cells divide, they need to make another copy of their DNA. And there are stretches within the DNA where you have the same letter are the same two letters of DNA that repeat. And in those structures when you make another copy, it’s easy for the enzyme that is filling in those nucleotides to slip because you see the same two letters repeating over and over. And so when that happens, there is afterwards a proofreading, where the copy that’s made is checked to be sure that it matches what was there in the kind of parent strand. And so people who have inherited problems with this proofreading function- there’s this cancer syndrome called Lynch, or people who have silenced the proofreading function in the development of the colon tumor or have what’s called microsatellite, unstable, MSI high colon cancer. And that name comes from the fact that these stretches are what’s called microsatellites and they’re unstable because they can be shorter or longer if you don’t have correct proofreading. So that’s a small group of patients with advanced disease. But it’s very important because first of all, those patients may have a genetic risk, and they need to be followed more closely and their family should be alerted. And also, there is now Immunotherapy. So they respond differently to treatment than other patients. But beyond that group, in patients with advanced disease, we have many subsets depending on how the cancer has developed. And one group is what you see in our title is this BRAF V 600E, where there’s a mutation in a gene called BRAF that can turn on signal to the cancer to grow. And that has target therapy associated with that. So we treat those patients differently. It’s also important because patients with advanced disease who have a BRAF mutation in their cancer have a more aggressive disease. And we know that the presence of BRAF V 600E mutation marks a group of patients who have a kind of a more aggressive, a tougher prognosis. And so those are patients we want to think about and figure out how we can give them matched therapy and what more we could do for them. There are other groups in advanced disease, we have other groups with matched treatment, patients who have amplification of a gene called HER2, or a specific mutation in KRAS you may see, I’m sure there’s a lot in Colontown about Biomarkers. So these are markers that we think about in patients with advanced disease. And we actually split the pie into what is driving the patient’s cancer, and how can we target that.

Dr. Rona Yaeger  7:01
When we look at early stage colon cancer, so again, this is colon cancer that’s limited to the bowel, has not spread beyond local lymph nodes, and is removed surgically. We really only think about this one biomarker, the MSI, and we know those patients do a lot better. And there’s a lot of studies now looking at giving Immunotherapy, potentially, after surgery, some trials even in lieu of surgery. So that’s an area of a lot of research. But the rest of the patients who have microsatellite stable colon cancer, are treated the same. And this is the large majority. And in the rising incidence of colon cancer in young people, most of those tumors developing microsatellite stable. So we know that in early stage colon cancer, there’s also a subset that had BRAF B 600E mutation. And there’s a subset that have this BRAF mutation that are not MSI high. It’s about 6% of patients. And we’re going to focus on them today for two reasons. The first is, like I said that in advanced disease, they have a worse prognosis. And we know that in early stage disease, they have a higher risk of recurrence. And the second is we have a matched treatment for them. We have a targeted therapy that goes after the BRAF, the altered BRAF. And so there’s a potential to do more.

Dr. Rona Yaeger  8:18
So what does it mean to say, oh, there’s this mutation and BRAF. What does that do for the cancer. So I have here a cartoon of a cell, and I’ll walk you through it. So basically, normally, a cell will only divide and grow if there is a stimulus to the cell, saying it’s a good time to grow. And so there are growth factors that lie outside the cell. This is the outside of the cell. Here, you can see below the membrane inside of the cell that bind to receptors on the surface, these receptors are meant to sense what’s going on outside. And when the growth factors bind, they basically are telling the cell this is a good time to grow, there’s a reason to grow. And when that happens, that signal is carried to the nucleus through a bunch of proteins that include the RAS protein, which is often mutated in colorectal cancer, and also RAF, which includes BRAF as one of the RAF proteins, and they signal down this group of proteins to get to the nucleus to say to the cells, it’s time to grow, we should divide we should survive. But at the same time, these signals are turned on normally there’s a counter signal, that puts a stop. So cells divide a little bit and then they stop. What happens in cancer is cells divide and they divide irrespective of having any growth factors, they just divide on their own, and they don’t have the normal brakes. So for example, this BRAF V600E is a mutation in BRAF, it turns on this RAF member and makes the RAF member turn on irrespective of what’s happening outside the cell. In fact, the BRAF V600E doesn’t need any activation from RAS, it’s on all the time. And if there is a feedback to turn off the signal, the BRAF is on on all the time, it’s insensitive to that. So that allows the cancer to keep growing. And all cancers have to figure out a way to keep growing. This is one way the BRAF mutation. Another way is the KRAS mutations that we often see. But today we’re focusing on BRAF, because as I’ve said, there’s matched treatment for it. So this matched treatment, there is an FDA  approved treatment for patients who have advanced disease where the tumor has spread beyond the bowel. So distant sites like liver or lung who have received prior treatment with chemotherapy. There’s an FDA approved a treatment based on an improvement in the time to progression for patients compared to standard therapy, patients live longer who get targeted therapy, and the quality of life is preserved. The targeted therapy consists of two components. It consists of a pill, BRAFTOVI is the trade name, encorafenib is the generic name. Patients take four tablets once a day. And it’s combined with an infusion called cetuximab that’s given intravenously, it can be given weekly or every other week, together with the pills taken daily. And what these drugs do the encorafenib+Braftovi binds to the activated BRAF and turns it off. And that’s the cetuximab binds to the receptor and turns off any other input into this growth pathway to hopefully turn off all the growth signal and to stop the cancer from growing. It doesn’t necessarily work for every patient. But most patients with advanced disease have some regression. And we think that this combination can stop the growth signal and most cancers that have a BRAF V600E. Most colorectal cancers, they have a BRAF V600E mutation.

Dr. Rona Yaeger  11:46
So how about early stage disease. So, like we said, most patients are cured. So these are curves that look at recurrence and survival after recurrence. So I’ll walk you through it. But basically, in black, you see the curve for patients who don’t have a mutation in the BRAF gene, or in the KRAS gene who have microsatellite stable and not the MSI high colon cancer. And you can see that all our curves are above 50%. Most patients are cured. But there is a big gap between the black and the blue or the blue is BRAF V600E mutated.  In the middle is a KRAS mutated so you see that the BRAF causes a higher risk of recurrence, but it’s a small effect. However, when patients recur, this is the survival after recurrence, we see having the BRAF leads to worse outcomes. So if we could prevent patients from getting to the point of recurring, it would make a big difference. So that’s what we are looking at with a new clinical trial that I am excited to talk about today. This is a trial that’s being done through the NCI so it’s open across the country. And it is open for patients who have early stage so stage three so that’s colon cancer that involves local lymph nodes, or stage two, T4, T4 means the tumor involves a full thickness of the bowel wall. So like if our bowel were like a hose, the tumor would reach the other side of the hose. You can see it through but it does not spread to distant site and might touch an adjacent organ but it is a contiguous involvement. So stage III, so nodal involvement from colon cancer or T4 full bowel wall thickness, patients who have received standard treatments, so these patients are considered higher risk, they would receive chemotherapy. In the study, if their tumor has a BRAF V600E mutation, they are randomized, half the patients will get usual care, which is observation after they finished chemo and half the patients are getting the targeted treatment of encorafanib and cetuximab for six months.

Dr. Rona Yaeger 13:46 
BRAF V600E testing is not currently standard, because like we said, we don’t really do anything with it. So patients who whose doctor has tested them for BRAF V600E, and know that their  tumor has a BRAF mutation, they can go on study based on that. But if their doctor did not test for it, if their site participates in this clinical trial, we set up retesting through the NCI where a few slides can be sent to a central lab. That’s a single lab working with the clinical trial, the single lab is in Dartmouth, a few sites can be sent and then your doctor will get a result BRAF V600 E mutation present or BRAF V600E mutation not detected. The patients start the study after they complete treatment. So there’s a lot of time after surgery, to think about the trial and patients only enroll after they complete treatment. So we account for the different treatments and also for the different extent of disease that patients had when they go on study. So this stratification is to make sure we have in both arms and equal group of patients who got FOLFOX or CAPOX–these are the two standard chemotherapies given for colon cancer. We stratified by the the length of time they got treatment, if they got three months or longer than three months, and also by the extent of the tumor that was removed, how far the tumor penetrate the bowel wall and were lymph nodes involved. And then we also stratify for something called circulating tumor DNA. What that is, is there are small fragments of DNA that are released by cells, they can be released by our normal cells, and they can be released by cancer cells. And they are available in the blood, in the circulation. So if the patient still has cancer cells present in their body, those cancer cells can release small fragments. And they can be detected. For example, they might have the BRAF V600E mutation. So there’s blood tests that are available to test for this, its not a standard test, but it’s being increasingly done with patients who have early stage disease. And if patients had this detectable DNA fragments from the tumor, we we want to have them on equal groups, because we know that that is associated with higher risk of recurrence. And the patients are then treated for the six months versus observation, you know what arm you get, there is no blinding, and then they’re watched, they’re followed as you would anyway, with scans and with blood tests to see what happens.

Dr. Rona Yaeger  16:13
So I just want to go over a little bit about the endpoints of the study and who is eligible. And then I’m happy to discuss and take any questions. So this trial is called a phase 2/phase 3 study, a phase 2 study is looking at the efficacy of an intervention saying how effective is this? And the phase 3 is saying how does this compare to what we do as a standard? So the phase 3 is saying do we affect the disease free survival? Do we have fewer patients recur when they get this treatment? But that’s a long endpoint, we have to follow patients for years. So we put in the study a phase 2, where we could look sooner and enroll fewer patients and be sure that there is something happening with this combination, before opening to the full phase 3. And so we’re looking at the circulating tumor DNA. In the patients who have circulating tumor DNA present, do they clear it more when they get this treatment compared to just observing them. And in the ones that don’t have detectable circulating tumor DNA, do they remain without detectable circulating tumor DNA, where they are in treatment, and if either group looks better for the treatment, we are good to continue and to proceed to the phase 3. The secondary endpoints, the other things we’re watching is we’re evaluating people for overall survival, we’re checking their toxicities from this treatment. And we’re looking at this alternative disease free survival from the time in which they had surgery to match with the published data on disease free survival. We’re looking at patients in the subset who have positive circulating tumor DNA, because we know they have a higher risk of recurrence. So maybe this is only helpful for those patients. And then we’re asking patients to fill out information-key symptoms associated with these drugs, which include rash, diarrhea, fatigue.

Dr. Rona Yaeger  17:58 
And so who is eligible? We went through a lot of this, but I want to reiterate –patients with colon cancer, that is stage III, that means colon cancer involving lymph nodes, or stage II, that is T4 involving the full thickness of the bowel wall, the patient’s tumor has a V600E mutation. If you don’t know if you have it, your doctor can send it to a central test, it requires only three slides and you get the result within a few days. Or if your doctor has already tested for that and they found that you have a BRAF mutation in your tumor, that is sufficient to get on study. The tumor has to be microsatellite stable, or mismatch repair proficient, so not that group that is MSI high that does better. All patients going on the study have to receive chemotherapy first. We require at least five cycles of FOLFOX or three cycles of CAPOX, they have to go on within eight weeks of completing treatment, no other cancer therapy besides the surgery and the chemotherapy, this is how well they have to be , you have to be more or less okay up in about for at least half the day. We know people just got chemo so we’re trying to be flexible, but we want them to be well enough to be on study. Similarly, we have some lab parameters, which we tried to make very flexible, because we know people just got chemo so their blood counts might be low.

Dr. Rona Yaeger 19:15 
So this is a national study. It is open in sites across the country. This is a map that  shows the number of sites currently, this is from clinical trials.gov. And you can see that in the northeast, we’re open in New York and Boston. We’re open in the Chicago area. It is open in Minnesota and Ohio. There are sites in Texas, and there are more sites coming online. I’m happy to connect people and to try to help figure out what site is closest. And also to turn to local hospitals and see if maybe they can open the study if there are patients who are interested. So this is my final slide I wanted to put up here. This is the clinical trials.gov ID for this trial. And this is the formal name of the study. It is a randomized study of the additional treatment with encorafenib and cetuximab versus observation for patients with Stage III or stage IIII BRAF V 600E in colon cancer. And I want to give a shout out to Qing Shi, she’s a statistician who helped me design the study. And the study’s open through the NCI, we have it open through multiple NCI groups to hopefully have national coverage. Thank you.

Manju George  20:31 
Okay, thank you so much, Dr. Yaeger. There are a couple of questions in chat. So one question is,  the patient, he’s concerned about once somebody enrolls in this trial, and then there is a recurrence and he’s on, encorafenib + cetux. What happens, he is using that one line of therapy already, right? So what are you thoughts on that?

Dr. Rona Yaeger  21:02
That’s a good question. So when the patients go on study, we do a CT scan, first, make sure they go on without any visible disease. But say a patient, like you’re saying in the scenario gets the six months of encorafenib+ cetuximab, and during that time, recurs. So that means that that tumor recurred through this treatment. So it is true, you wouldn’t give that treatment later, but it’s also true that for that tumor that treatment wasn’t doing enough, right? Because if the tumor was able to recur through it, even in the advanced setting, where are you starting treatment, when you see it, it was not giving you enough. There are trials for patients with advanced disease, but this is the only FDA approved treatment right now, that is matched for a BRAF V600E mutation. I think, while it is possible, this could happen and you wouldn’t want to give that treatment again, I think that it’s not highly likely, it’s quite unlikely to recur. First of all, the patient just had a scan, and they’re being followed within the first six months. And also we know that if you look at advanced disease, most people have some response, some shrinkage with this combination. But it’s true. It could happen. And if it does, this is just not the right treatment for your cancer.

Manju George  22:21 
Okay, continuation to that question is that they are wondering that prior exposure to E+C would make them ineligible for a trial like the SWOG 2107? Yeah, that would be the case.

Dr. Rona Yaeger  22:36 
Yeah, that would be the case. Because this trial, you mentioned is this combination of encorafenib and cetuximab  versus this combination plus Immunotherapy. And if this tumor was able to grow through it’s not a good treatment for that cancer. And so that trial, one half of it is giving you a treatment where the tumor would have already grown through that. So that is correct. Yeah. So we’re saying if you give it earlier, do you do better? And we don’t know. That’s, that’s what we’re asking.

Manju George  23:07 
Yeah. Okay. And then the question I have is that like, so the assumption is that, because these are people without any visible disease, getting them on encorafenib plus cetux early on, you’re trying even if there is microscopic disease growing that is not yet visible, because the tumor volume is so low this treatment is like, it’s almost like prophylactic treatment to prevent or delay the recurrence. Is that what the idea is?

Dr. Rona Yaeger  23:39
Exactly? That’s an idea. We don’t see anything. We know some people will recur,  so some people must have microscopic disease. And we’re trying to hopefully prevent the recurrence, or at least, to delay the recurrence and there is precedent in melanoma. The treatment with these BRAF drugs actually improves the cure rate, not these, but with BRAF drugs, improves the cure rate and we know in lung cancer, targeted therapy can also after surgery, improve the cure rate. So there’s precedent, but there’s no experience for this in colorectal cancer. So, so we don’t know we’re looking at patients with colon cancer here. Yeah.

Manju George  24:14 
Okay. And I think so this patient is saying that it’s a tough choice. Okay. So they’re asking why is the therapy not six months? Oh, I think they’re asking why the patient’s only need– I’m hoping that what this person is asking– is that you say that the patient should have at least three months of adjuvant chemo and then they’re eligible, right?

Dr. Rona Yaeger 24:14 
Yes, exactly. So they should get standard treatment at least three months, then they can go on to study and then we limited the time of the target therapy as six months. Because when we look at the effects of target therapy in the advanced setting, we see the greatest benefit within the six first six months.

Manju George  24:59
Okay. That makes sense. I hope your question is answered. And then I think that like from from our BRAF group, what we have generally seen is that, people after they have the treatment, they finish urgent treatment, they are very nervous about what to do next. So in that setting, I think having a trial like this, it’s something to do, because otherwise patients are just waiting. Many of them are really anxious that they might have a disease recurrence. So with this trial they have the feeling that they’re doing something more proactively to catch it, and then to do something about it. Right?

Dr. Rona Yaeger  25:37
Yeah, exactly. And so we’re thinking, this is a subgroup, but we have something we can do, and there is enough of a risk that we think it’s worth testing. Yeah.

Manju George  25:48 
Okay. And so the next question is, would stage IV have any chance of using this maybe after chemo can staging ever go down from 4 to 3.

Dr. Rona Yaeger  26:02 
So there are patients who have stage IV colon cancer, who can have all the tumor removed. And there are patients who have stage IV disease where the tumor is too extensive to remove. In the patients where it’s not all removed, these are FDA approved, they can get the BRAF therapy. In the ones where they might have a single or a few liver or lung lesions that can be removed, we don’t have data at that point for giving the additional BRAF treatment. And this study, we limited to patients who have stage II or III because we’re trying to select a group that is very similar. So it’s unknown. So at this point, if someone has stage IV, and they enter what we call NED, there’s no evidence of disease, they shift from visible disease where all disease is removed, they would be watched. Your doctor will guide you in terms of how long to do chemotherapy, but afterwards, just like the early stage patients, they’re watched and many of them can be cured. If this study, were positive, we may end up thinking about that stage IV setting but this study is limited to the stage II, stage III.

Manju George  27:14 
Okay, Thank you. And I think I asked this question before we started the call. But we also have patients who are MSI. High. Could you please explain why they are not included in this trial?

Dr. Rona Yaeger  27:27
Yeah, so the patients who are MSI high have a much lower rate of recurrence. So the stage II patients who are MSI high colon cancer, the rate of recurrence is actually very low. And most of those patients we just watch. And then the stage III setting there is some recurrence but the risk is a lot less than for the MSS, BRAF, V600E. And there are also studies in that group for Immunotherapy. So we think that there’s a very good tool available, and that rather than develop this treatment, in patients who are MSI high or the BRAF mutation, we’re giving a chance for the Immunotherapy data to develop where we think if more treatment is needed, there is a good tool there that could have a long, long effect. Patients here who are MSS can’t get Immunotherapy, the tumors don’t respond. And so we have to find another way to go after it. And that’s why we’re doing the targeted therapy here.

Manju George  27:51 
Okay, that that makes sense. So the this question is, so someone coming off adjuvant chemo with a ctDNA negative, do those people have a lower risk of recurrence?

Dr. Rona Yaeger  28:47 
Yes, they do. So we know that having detectable ctDNA after treatment raise raises the risk of recurrence, probably there’s some cells that are making this circulating tumor DNA. If ctDNA is negative, the risk is lower, but it’s not zero. So our study is enrolling irrespective of circulating tumor DNA. So there are studies out there that are for circulating tumor DNA positive only, this study enrolls either way, but we take the circulating tumor DNA into account to make sure that there’s an equal number of patients in both groups with that with that feature. But you’re right, that is a very important prognostic marker.

Manju George  29:31 
Okay, thank you. And the next question is, I think I’m probably missed it. What is the number of people or number of slots that are available for this trial?

Dr. Rona Yaeger  29:41 
The trial has about 200 slots for the phase II component and about another 200 for the phase III. So in total, it’s up to 400. So lots of slots because it’s a small subset of patients, so it’s no issue in terms of slots for the study.

Manju George  29:57 
Okay, so, for a patient who was stage III or you know, T4 stage II. So your recommendation would be that, if they know that they are BRAF V 600E, mutated, they contact, the trial sites to find out if they can get on the trial almost when they come to know of their BRAF status?. Yeah. And then for for the other people who don’t know their BRAF status, how would they go about getting the tests? What do you suggest.

Dr. Rona Yaeger  30:33 
So if you’re interested in the study, anytime after surgery, even during chemotherapy, I would discuss it with your doctor who can set up the BRAF testing. They can do it, if they are set up to do it with their own labs, they can just do it that way. If not, they can send it to that NCI central site, and then they’ll tell you whether the BRAF mutation is detected. And if it is, then you can talk about whether to consider the study. And then after you finish treatment, you’re already set up you know what to do, you know, oh, I’m planning to consider the study I want to register, or I’m not interested in the study. If the testing is done through the NCI, there is a consent form. That’s a pre screening. So you’re already set up to easily enroll on the study. But we know that most patients who have the the testing will not have the BRAF mutation, it’s about 6% of patients overall, who are microsatellite stable and have a BRAF V600E mutation.

Manju George  31:30 
Okay, so my next question is, is there like a specific group of colon cancer patients that you know, with a higher chances of being BRAF that you would recommend to ask their oncologist for this test? Like, what would that group be?

Dr. Rona Yaeger  31:48
That’s a great question. BRAF is, like we said, it has a slightly higher recurrence. So it’s associated with T4, and N2. So that means tumors that penetrate deeper and involve more lymph nodes, we tend to see that go along with BRAF. You can see BRAF in patients who are older, but sometimes those are MSI high and not the MSS. But you can definitely see as people get older, there is a higher incidence of the BRAF mutation. But often it’s a less aggressive MSI high subset. Otherwise, there’s no easy marker.

Manju George  32:27 
What about like ceacal tumors or proximal colon?

Dr. Rona Yaeger  32:33 
Yeah, it’s more on the right side. Yeah, that’s a great point. So we talk about the colon is like an upside down U. So the first part of the colon you have that arm that you that goes up, and so that’s called the right side. So the Cecum, the first part of the colon or the ascending colon, the BRAF V600E mutation is more common there. But it can be anywhere along the colon. Yeah, that is correct.

Manju George  32:59 
Yeah. Okay. So for us to talk about it in in Colontown, we could say that people with T4 tumors, and especially they have T for N2, then we would strongly recommend that they talk to their care team about this trial. And if they have not got a BRAF V600E testing, then this would be a way to get it tested. And then they can decide if they want to be part of the trial or not. Right, this will be an opportunity to find out if they have high risk disease that may have a high slightly higher chance of recurrence. So this other question, is they are asking if you must enroll within eight weeks of conclusion of adjuvant chemo?

Dr. Rona Yaeger  33:46 
Yeah, because we don’t want to have some people who go on and have had such a long gap. So we try to keep it similar. Yeah, so that’s where we are.

Manju George  33:57 
Okay, so maybe then another point to keep in mind is that it might be as as soon as they know their TNM status, maybe at that time is the best time for them to reach out and find out if they are BRAF positive, right?

Dr. Rona Yaeger  34:11 
I agree.

Manju George  34:11 
Okay, So let me see if there are other questions.I’m not seeing any so let me think if I have anything else.

Dr. Rona Yaeger  34:31 
I’m happy to talk to anyone. The trial’s up in clinical trials.gov My email is on clinical trials.gov. You can send me a quick email if you want and say, Oh, I have this scenario. And I can say it looks like this is appropriate or it looks like this is not the right study. I’m happy to quickly screen for anyone. I’m happy to speak about BRAF V600E. You know, you can connect with me if needed. But yeah, it’s as you said, so the T4 Stage III patients, patients who are at higher risk, it’s worth considering if you’re T4N2, if there’s something more you can do, it’s probably worth considering. So that’s a good group to look for that BRAF mutation to see.

Manju George  35:10 
Okay, okay, I think Julie is making a list of firstl ine trials that we were wanting to give more information to patients.  So we could talk about this trial in stage II, as well as stage III groups, and then say that, you know, if you don’t know your BRAF status, and you have a T4 N2 tumor, then this will be a great opportunity to find out if you have in the unlikely chance that you have the BRAF mutation, here’s something else that you can do.

Manju George  35:44
There is another question.

Manju George  35:54 
Oh, I think this person is asking, which is just a little more explaining of what we think is happening while the patient is on treatment? Is it removing any microscopic cancer or suppressing it?

Dr. Rona Yaeger  36:09 
So what we think is that the patients on the study had all the cancer that we can see removed, but we know that many of them, that’s all the cancer there is, and they’re here. But for some of them, there are cells that we didn’t see that are still there. And so the goal of chemotherapy is to kill those cells. But not not everyone gets chemotherapy  is cured. So that means that some of those cells, some people who have those cells, it’s only a portion of patients, but some people will have those cells, the cells are able to survive the chemotherapy. So the goal here with the BRAF treatment, is to try to kill any cells that have a BRAF mutation. And that’s what we need the tumor to have a BRAF mutation to go on the study. But if those cells have a BRAF mutation, these drugs will go in your body and all your circulation will hopefully get to those cells and hopefully destroy them. And so if that’s possible, that would improve the cure rate. But we don’t know. So that’s why the study is randomized, because any treatment has some risks. So we’re saying, you know, is it is it worth it? Do do we affect the chance that the cancer will come back to affect patient survival with this treatment? And also we ask patients, like what were your side effects, was it worth being on the study?. But that’s our goal. But if there are some cells out there that have the BRAF mutation, this treatment can get there and hopefully kill those cells.

Manju George  37:32 
Okay. And then maybe, I don’t want you to explain a little bit about the the idea of emergence of resistance. And you know, the selection of those things depend on what’s the initial volume of the cells, right, like, if there is very micro metastatic disease, and the number of cells is so small, then the chances of resistance emerging is much lower when compared to when there is established disease.

Dr. Rona Yaeger  37:58
Exactly. So that’s our hope here. So when patients have metastatic disease that we can see, there’s actually millions and billions of cells. And so when you give the target therapy, you don’t usually cure patients. The tumor shrinks, you can get a nice response, but you don’t usually get rid of all of it. So our hope here is that there’s very little right, we don’t even see it. And so that treatment here might be sufficient to kill all of that, just like Manju said that when there’s less there, you have fewer cells available to find a way to outsmart the drug. And so maybe if you’re killing off a portion here, you can kill off all of them, especially because they’re simpler. They haven’t figured out a way to spread yet. They’re just few cells probably that haven’t yet implanted and extended to be a visible metastasis. So that’s the idea. And that’s why we take hope that in melanoma and lung cancer, they actually seem to be curing more patients. So we see a paradigm where it is possible.

Manju George  39:01 
Okay, Thank you so much. This is about the Stand Up To Cancer, the Dr. Parikh’s trial. Has the arm with the targeted treatment shown any promising data?

Dr. Rona Yaeger 39:16 
So the Stand Up To Cancer trial has a BRAF V600E arm for patients who are ctDNA positive, and they have a BRAF V 600E mutation. They get the same encorafenib and cetuximab, but they also get a MEK inhibitor, Binimetinib. So they’re getting a triplet therapy. The FDA approved double a therapy but the triplet therapy is meant to have a similar effect to shut down this pathway. At this point, there are too few patients treated on that arm for us to know. But it’s really a similar idea, but that arm is exploratory in the patients who have ctDNA positive. So on some level the study is asking the question in a bigger way but it’s a similar idea. If given BRAF therapy after chemo improves the chances the patients will be cured.

Manju George  40:09 
Okay, I think that’s all the questions. Thank you so much. And I think that we will probably also share your email address with everyone. So you know if they have any questions then they can reach out to you. Okay. A recording of the talk will be available on Colopntown University.

Dr. Rona Yaeger  40:30 
Thank you. Thank you for the opportunity.

Manju George  40:34
Okay, take care. Bye. Thanks, everyone for attending.

DocTalk
2024
Dr. Yaeger
BRAF
MSS
Early-stage

In this DocTalk, Dr. Rona Yaeger from Memorial Sloan Kettering discusses how to approach early-stage BRAFV600E MSS colon cancer following adjuvant treatment with PALTOWN Scientific Director Dr. Manju George. Recorded in June, 2024.

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BREAKWATER trial

BREAKWATER trial

DocTalk
2023
Dr. Kopetz
BRAF
MSS
Trials

Dr. Scott Kopetz from MD Anderson Cancer Center discusses the BREAKWATER trial with PALTOWN Scientific Director Dr. Manju George. Recorded in May 2023.

Manju George 0:00
Hello everyone. Welcome to DocTalks. I’m Dr Manju George, the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN. And today we have the pleasure of having Dr. Scott Kopetz with us, who’s going to tell us about the BREAKWATER trial. But before we start, Dr. Kopetz can you tell us how you got interested in doing clinical trials and working in GI oncology?

Dr. Scott Kopetz 0:25
Most certainly. So I think, like many, I had personal reasons to get into oncology. I lost my mother to cancer at a young age, and so I was motivated to tackle this, and ended up in GI oncology, because I just fell in with a wonderful mentor, Paul, who was here at MD Anderson at the time, and was working in colorectal cancer and just kind of fell in love with the clinical problems and the wonderful patients of course, and really have been inspired ever since by all of our patients.

Manju George 1:08
Thank you for sharing. So then, do you want to share your screen?

Dr. Scott Kopetz 1:11
Yep, absolutely. Yeah. So just delighted. This is always so much fun. And I just start by saying, really a delight to be able to discuss and to share some of the updates here, and want to touch on some of the efforts that are ongoing. I know it’s been a little while since we’ve had an update, and so I’ll start with a little bit of background, and then dive into where the field is now and where we’re going. So some conflicts: very involved in a lot of these companies that are involved in developing novel therapies for BRAF. So kind of a key point I always like to start off with, and so apologies for those of you that have seen this slide a dozen times before. But the idea is that this is a cancer that when we have a BRAF mutation, it results in activation of growth factors, or a growth signaling pathway, right? This is a normal, healthy pathway in your body. When you cut your skin, your epithelium- your skin cells, turn it on to grow and repair, and then it gets turned off. The problem when there’s a mutation in the pathway like BRAF is that it’s constantly on and these cells are then growing. And what we found, though, is that these cancer cells like to be in this state, and that when you inhibit BRAF, with a medicine like encorafinib, that you indeed can shut down that pathway. The growth turns off, but the tumor adapts. The cancer likes this state. And then in cancer terms, we talk about this as homeostatic regulation. It’s like the thermostat: If it’s hot or cold, things get turned on or off with your heat or AC to adjust, and it’s the same thing with with cancer cells. And so there’s a transient inhibition, but the tumor adapts, has all these feedback mechanisms. The wiring that turns on other things upstream through the EGFR receptor is one of the prominent ones, and then what happens is that same signaling pathway gets turned back on.

Dr. Scott Kopetz 1:11
So the fundamental concept, and why we are using combination therapy and BRAF is because when you inhibit that second node, the EGFR, then you can shut down that adaptive mechanism, and so the combination provides benefit where either one alone doesn’t. So of course, this is the rationale behind the BEACON study, which looked at the encorafinib, the cetuximab, the BRAF and EGFR, compared it to chemotherapy control, then and looked at both triplet with a MEK, which didn’t provide any benefit, or the doublet with the BRAF and EGFR, which showed very nice results and improved overall survival, increased response rate, was a nice building block then for us to now become a standard of care, but also recognizing ways that we want to improve.

Dr. Scott Kopetz 2:42
So one way to look at this is to say it’s clearly active providing benefit from patients. There’s a subset of patients who can be on this regimen for a really long time. There’s also a number of patients that get some benefit for several months, and then the tumor adapts and progresses. So one of the questions is, well, why is that? And one of the areas that we’ve been able to characterize is really understanding these mechanisms of resistance. This is a complex slide, but what I want to do is just to have you visually look at the control and looking for any red mark, and a red mark means there’s some acquired event in the tumor. You can see very little evidence of red but when you look at the treatments with the BRAF and EGFR, you see all of these red marks. These red marks are predominantly around RAS mutations. There’s some other ones. But really, this idea that KRAS and NRAS can get mutated, the tumor mutates those in order to maintain that addiction to that growth signaling. And so, there’s an example here of a case study. And this is something I reported last year at ESMO. And this is a patient that was on the trial and at the time of progression, after about eight months on treatment that we looked in the tumor by circulating tumor DNA. So all of these KRAS mutations. These are all present in different subclones. And this is a real challenge, right?

Dr. Scott Kopetz 2:42
How do we prevent these subclones from growing out and developing resistance to the therapies? So put a pencil on that -we’ll come back to that, and some interesting hypotheses coming on that, but just acknowledging that, that’s one of the limitations that we’re dealing with. So where’s the field going? This is a good foundation, as I mentioned, and I’ll talk about some of the studies here briefly, and not really focusing a bit on BREAKWATER study, which is our first-line trial, really trying to understand how we best utilize this.

Dr. Scott Kopetz 2:42
So first, let me share some of the preclinical data that’s ongoing, and asking, “Can we do better? Is the idea of targeted therapy and more traditional chemotherapy, can we combine those and get more benefit out of that?”. Well, one of the findings that we had when we looked at this in our mice work is–in the mouse, we can generate the tumors, we can treat them with one therapy, and then move into second-line in the mouse, and then, compare this to when we do it altogether. And what we can see is that this interesting phenomenon. We think about chemotherapy and targeted therapy is two different things, but the reality is that there is some degree of cross-resistance between them, meaning that when a tumor develops resistance to chemotherapy, itcan sometimes develop resistance to the BRAF inhibitor, even though it’s never seen the BRAF inhibitor, and then vice versa. So these are kind of complex figures, but I think the way to look at it is to say, here is the benefit of encoafinib in this model, when you give encorafinib and cetuximab in first-line, the tumor has never seen a chemotherapy. However, if you give chemotherapy first, wait for the tumor to progress, and then give the BRAF and EGFR, you don’t get as much benefit. So these models aren’t under control for as long. And interesting– the same with the chemotherapy, so the prior targeted therapy may impact that. So the question is that sequential may not always be optimal in that situation. And so when we look at this and say, ‘Well, what if we put them together? What if we put the chemotherapy together with this?’.

Dr. Scott Kopetz 2:42
If you’re not used to looking at these mouse model graphs, what you’re looking for are tumors that are shrinking, going below the lines. And here you can see in the blue, these are the lowest, the best, and the combination of the targeted therapy and chemotherapy may actually induce more activity. So some of the conceptual rationale behind the BREAKWATER study: This is a large international phase III study that’s ongoing, and I’ll show you some of the data from the safety lead-in which was just ensuring, as we thought, that this would be safe to combine chemo, either FOLFOX or FOLFIRI, with the encorafinib and cetuximab. The ongoing study from phase III has three arms currently as you can see here. We don’t have any results from that, so nothing I can share yet on the randomized portion. Well, I’ll share some of the really promising data on this safety lead-in. First we should reflect and remember that chemotherapy alone in first-line gives us about a 40% response rate, the targeted therapy about a 20% in the later lines. And so we’re looking at some of these response rates, now the combination and seeing in first-line now 68/75% of the patients are having their tumors shrink down by more than half in volume. And even in second-line, where we expect maybe a 10% activity of the chemotherapy, you can see really promising, 40 or so percent shrinkage. and that duration of response is really fairly long. So remembering that with encorafenib-cetuximab we’re seeing duration of responses in under six months or so, we seem going much higher. The other way we can look at it is these progression-free survival curves where we’re seeing PFS’s that are really promising here, even in second-line, where medium PFS is somewhere in that four to six months with our current standard of care now, these small cohorts see really promising data. So, just acknowledging encouraging numbers, these are small cohorts, but I think giving us in the field a lot of enthusiasm that we’re going to see benefit with these combinations.

Dr. Scott Kopetz 2:42
Alright, so let’s go back to this–what about the mechanisms of resistance? So, a little complex– throwing a lot of scientific terms out here, but you we can actually look and see what’s changing in the tumor. And the bottom line is that when tumors progress on chemotherapy or targeted therapy or the combination, they actually have a very different pattern. And you see a number of different changes that suggest that we’re constraining the potential mechanisms of resistance, and that when you give the cancer fewer opportunities to progress there are fewer solutions to the problem of how to grow it in this regimen, what we see is that means that the tumors have a longer period of disease control. So I think the biology is really suggesting that.

Dr. Scott Kopetz 2:42
Now, interestingly, if we look at not BRAF colorectal cancer tumors, but if we look at patients that don’t have a BRAF mutation or a RAS mutation, these are ones that would benefit from the EGFR inhibition alone. There’s some data that we presented just recently in 2 JCO papers that reflect on the fact that RAS mutations occur in 40 and 20% KRAS and NRAS of patients treated with an EGFR inhibitor alone, but when you combine that in first-line with chemotherapy, it turns out that less than 10% of patients develop one of these secondary alterations. So we’re going for more than 50% like we see in BEACON, acquiring these secondary alterations. Now, when we combine it with chemotherapy earlier on, you don’t see the tumors picking that mechanism of resistance of acquiring RAS mutations. So we don’t know, I think it’s going to be really interesting to find out, but the same could occur, right? Can the combined chemotherapy prevent some of these acquired RAS mutations? Now this kind of makes sense, if we recognize that RAS mutations actually don’t result in resistance to chemotherapy, right? So RAS mutations may be the easy way out for developing resistance to the BRAF, but when you’re giving a combination, the tumor has got to find a way to grow through the BRAF inhibitor and the EGFR inhibitor, and through the chemotherapy. And if the acquired RAS mutations doesn’t result in resistance to the cytotoxic chemotherapy. Well, that’s not a solution to the tumor to grow. It’s got to find a harder way an alternate way. So this conceptually makes sense, that we’re cutting off pathways of resistance that may occur. Now the other question that we’ve asked is, well, this combination chemotherapy, we know that at some point with oxaliplatin, we need to stop the oxaliplatin. We use these maintenance regimens. So how do we do that optimally?

Dr. Scott Kopetz 14:26
And and the mouse modeling at least, suggests, probably what we would think makes sense, which is, you can’t just do maintenance with encorafenib. You need both encorafenib and cetuximab, and then also that you may get some benefit by continuing some of that 5-FU alone with it, as we had been alluding to, resulting in some of the alternate mechanisms. So we really think that the maintenance regimens, and this is how it’s written in the study, should be like a 5FU, encorafinib, and cetuximab, once a patient has received a maximal amount of oxaliplatin.

Dr. Scott Kopetz 10:19
All right, so where else is the field going? I’ll share a little bit about some of the updates in the IO space here. And this is building on some nice data that MAPK pathway inhibition, can enhance some of the immune responses in BRAF patients. And so this is that actually, from Ryan Corcoran’s group, looking at – these are old studies that we have done in years past, looking at, in responding patients, it turns out that you see an evidence of immune infiltration. And when you look at paired biopsies from patients who were gracious enough to consent to those, you see this increase in these these T cells. So we know that even though there’s no immunotherapy given in these figures, that just the targeted therapy alone may drive an immune response. And so there was nice data for those interested, looking at a BRAF, MEK, PD-L1 that is in that prior publication, thinking about how do we build on encorafinib and cetuximab, a nice trial led by Van Morris in our group looking at this, saying, “Can you add a PD-1 on top of this, even in microsatellite stable?”, so a small study but encouraging 50% response rate, which favorably compares the 20% we’d expect with the encorafinib-cetuximab alone. And then increasing the durability of this, and I think really seeing some patients that are having amazing durability to their disease.

Dr. Scott Kopetz 16:43
So that is an ongoing randomized study that’s currently enrolling nationwide for patients in second or third-line to be randomized, encorafinib-cetuximab, with or without nivolumab. So two to one randomization, so every three people enrolled, two get the nivolumab and one with the encorafinib-cetuximab. I will mention as an aside that there’s some data suggest maybe the PD-1 can rescue resistance in some settings. So there is a study, or now a cohort, that’s open– encorafenib-cetuximab-nivolumab at our institution, even if patients that had prior encorafenib and cetuximab, there are openings there. So it’s an option to consider.

Dr. Scott Kopetz 1:11
The final study I’ll mention is the rare subset of patients that have MSI high, which is more immune-sensitive and a BRAF mutation. And this is a trial ongoing that’s randomizing an initial first line setting; Pembro or PD-1 with or without the encorafenib, cetuximab to try to again, show that synergy between immunotherapy and targeted therapy. All right, so with that, just to conclude, I think this group knows: BRAF mutations, poor prognosis. We should be testing for it. We should make sure that this is a known status and that combination strategies are certainly successful, the encorafenib-cetuximab’s, the current standard of care. But hopefully I convince you that there’s some good rationale, pre-clinically and preliminary data from our first 60 patients, of potential benefit when we combine chemotherapy with encorafenib-cetuximab, and that study is ongoing, the BREAKWATER study, but there’s really interesting biology suggesting that you may be influencing and constraining the mechanisms of resistance. So if we can really shut off some of those RAS mutations, for example, that would be a substantial benefit. A lot of other areas, I don’t have time to go through all of them, but just updating where we are with the PD-1 combination: There’s work going on in neoadjuvant in the UK and adjuvant settings here in the US, a number of novel combinations are ongoing, including – I’d highlight this really interesting data that came out of an unbiased screening study with BET inhibition which is a epigenetic modifier in BRAF-mutated colorectal cancer models that was presented at AACR this year, and there’s actually a trial through the NCI network that will be opening up here the next few months to test that in patients who’ve previously been treated with encorafenib and cetuximab. So with that, thanks, as always, for your time and interest.

Manju George 19:37
Thank you very much. So, I think I will ask the first question. For a newly diagnosed patient who is BRAF mutated, with all these trials available, what do you think – if they have access to all the trials, what would be the good sequence for them to enroll?

Dr. Scott Kopetz 20:01
I think if they have MSI-H tumor, about 20% of BRAF patients will, the SEAMARK study, the last one that I showed is a great one, thinking about, how do we combine immunotherapy and targeted therapy. In patients who have microsatellite stable, 80% of BRAF patients, those are ones that we really think the BREAKWATER study is a great one to participate in. I think it is really an exciting study. We really hope it will be beneficial there. After that, if after patients have been exposed to encorafenib and cetuximab in some way, again, thinking about, can immunotherapy rescue that, as Dr. Morris’ study here is exploring, but then thinking also about how these other novel therapies, deeper inhibition of MAP kinase pathway and others may play a role.

Manju George 21:01
So basically, you’re saying that – it’s really nice that, Dr. Morris’ study is now accepting patients with encorafenib and cetuximab, right? Because that was something that people were concerned about. And then the other thing is that, so you really believe that the combination plus chemo is better instead of waiting and then, having that separately and then getting on, say, for example, the Van Morris trial?

Dr. Scott Kopetz 21:27
Yeah, so the SWOG study. Right – and I think, and for patients that are maybe on the control arm, for example, of BREAKWATER, I think the SWOG study is a great one. I think your point’s a good one. Just participating in clinical trials is important, and not all trials will be available to all sites, but we really do think that these are some of the more compelling directions that the field could go.

Manju George 22:00
Annie has a question, “Have you seen responses in BRAF patients with peritoneal mets?”

Dr. Scott Kopetz 22:05
Hi Annie, great, great question, as always. So yes, we have. You know, peritoneal disease is sometimes hard to measure and so response rates kind of get a little murky. Without getting too detailed, peritoneal is a, kind of a strip more, kind of across a surface of a tumor. The way that the guidance is to measure tumors, is that you measure the longest dimension of the tumor. So if you think of a strip of cancer, you’ve got to kind of measure that the long dimension. So even if the tumor kind of shrinks down this way, it doesn’t really get reflected. So you will see lower response rates. But part of that’s a bit of a function, a little artificial, just how we quantify the responses, and so you don’t always appreciate the extent of that, but yes, we can see responses in that setting.

Manju George 23:07
OK. I have a question about the schema of BREAKWATER. It seems that they have many cohorts, some of them, I think the main studies, like FOLFIRI plus encorafenib, plus cetuximab, and then they have an additional cohort, like a side one cohort D or something, where they are combining with FOLFOX. And then I also heard that there is some kind of prioritization that patients would be first enrolled into the encorafenib plus cetuximab arm. So, these are some of the questions that patients have, if I’m a newly diagnosed patient and I’m considering BREAKWATER, what are my chances of getting into each of these arms? Because, for example, if I’m just going to get into encorafenib plus cetuximab and I won’t get into a combination arm, then patients are thinking whether that’s a good strategy for them first, to get exposed to it, because then you can’t get on, it shouldn’t narrow down the options that are available to them later.

Dr. Scott Kopetz 24:01
Yeah, right. Yeah, it is. And I think it is important things to understand; So a little clarification: There are some amendments coming to BREAKWATER, really to focus that down a little bit more. And what we’re seeing is that the FOLFIRI component will be evaluated in a bit of a later point, and won’t be part of the initial randomization. So it’s still going to be a FOLFOX based chemotherapy backbone. Just to say, there are some changes coming that will make it a little more condensed and I think a little more patient friendly. Because I think the arms that we really are interested in is, how much does the combination of chemotherapy and targeted therapy compare to what right now is considered the standard of care, which is the chemotherapy alone. So that’s the main question. And I think the goal of really trying to get to that question as soon as possible.

Manju George 25:08
Okay, okay… okay – we will see if there are other questions. I think Annie had maybe one more.

Dr. Scott Kopetz 25:15
Oh yeah, how full SWOG 2107 is right? So, yeah, it’s enrolling. There’s still openings. And I suspect at least over the next six months or so, we’ll have openings there as well.

Manju George 25:33
Then she’s asking about class two and class three mutations.

Dr. Scott Kopetz 25:37
Yeah, great. Yeah, the class two and class three. So class one, is the BRAF V600E. The other mutations in BRAFget separated out into two different classes of therapies. There were some low levels of activity that were presented with a number of different trials. It was a little heterogeneous across many different kinds of settings. Not a great home run evidence of activity in colorectal cancer there. So I’m not sure we have a great solution to those yet, but the rationale is still there. I think part of the problem is that these are very heterogeneous, like not all class twos behave the same, not all class threes behave the same. So it is a little hard to sort out, and they are a bit rare, but we’re learning. We’re making progress. There’s hints of activity, but not any amazing responses yet.

Manju George 26:45
There’s a question from Katie, are you able to get into the BREAKWATER trial, as a second line of treatment?

Dr. Scott Kopetz 26:52
So not into the BREAKWATER. Even though I showed some data from the safety lead-in that included second-line patients, that was just in the safety lead-in. Right now, in the randomized phase III portion it’s patients that are previously untreated that are entering. So the second-line would be more the SWOG 2107 study, enco-cetux with or without PD-1.

Manju George 27:18
Yeah, I think Annie has a question. We had a few patients on the BREAKWATER trial, what is the best next treatment? I think you had mentioned some in your talk, right?

Dr. Scott Kopetz 27:26
Yeah, good question. If they were on the chemotherapy arm, they could then go over to the SWOG study, for example. If they were on the encorafenib-cetuximab, or the combination arm with chemotherapy and encorafenib-cetuximab, then, at that point, you’re right thinking about, if they were just on encorafenib-cetuximab, you could certainly think about chemotherapy at that point. Or, like mentioned, there are clinical trials ongoing in that setting to try to explore.

Manju George 27:27
With the safety lead-in, there were some differences in results with FOLFOX and FOLFIRI, right? So, I’ve heard some people ask, with FOLFIRI, there were some interactions, and the drug availability was less… or something. And then the main randomized portion of the trial is now with FOLFOX, but then the long term data show that FOLFIRI as acombination has been better, right?

Dr. Scott Kopetz 28:35
Yeah, so, we don’t really know for sure, I think it’s fair to say. I hate to make too much out of these cohorts of 10 or 15 patients and try to combine in one or the other way. So I think I would be a little more cautious there. There’s a little bit of a PK interaction as I was mentioning, so you don’t get the same exposure to the drugs as you would normally. But not sure that’s playing a big deal based on the results that we’re seeing. Like you said, it was certainly encouraging. So I think that the data really suggests that there’s substantial benefit with the FOLFOX out of the safety lead-in so I’ve been very comfortable in recommending that to the patients. I don’t think we’re missing an opportunity necessarily, on the right partner.

Manju George 29:31
Okay, okay. And then once they finish the chemo plus the Encorafenib+Cetuximab potion, then are you thinking that, say for example, if they don’t have access, we have many – because BREAKWATER is open worldwide, we are fortunate to have the SWOG 2107 right? But many other countries, they don’t. The the idea of combining encorafenib plus cetuximab with nivolumab isn’t that common. So do you think that in that case, they can get LONSURF+bev, or once they progress on the trial, what options could they consider?

Dr. Scott Kopetz 30:08
Right, yeah, so, there’s always the alternate side of toxic regimens that may make a difference. LONSURF+bev I think certainly is reasonable as well. So we do, you’re right, just kind of lean back on what kind of works in general, in colorectal cancer.

Manju George 30:23
Okay, and then, when you look at the resistance mutations, there are so many met amplifications and things like that. Do you think STIVARGA (regorafenib) has worked for people? I’ve seen that some people prefer to use STIVARGA when they get progression on encorafenib plus cetuximab. So what is your personal —

Dr. Scott Kopetz 30:44
–Yeah – we don’t – It’s not great data on that, necessarily. I think it’s a reasonable option, but I don’t know that it’s not something we’ve seen pan out in our preclinical studies, that we’re driving towards a more sensitive phenotype to regorafenib, but certainly a reasonable option.

Dr. Scott Kopetz 31:05
Okay. Were there any learnings from ANCHOR CRC trial regarding PFS or OS to those without peritoneal mets?

Dr. Scott Kopetz 31:14
Yeah, so ANCHOR was a study looking at the encorafenib plus cetuximab plus a MEK inhibitor, and that was running in parallel with BEACON, and we learned from BEACON that the MEK was adding more toxicity, not adding as much benefit. So it’s a little harder to extrapolate some of the ANCHOR data otherwise, but I think what we recognized is that the PFS was kind of in the same range as what we’d expect with the chemotherapy alone and the OS, likewise, looked encouraging, but it was non-randomized for the OS, which makes it hard to interpret. So, the breakdown by with/without, peritoneal metastasis is not really well laid out.

Manju George 32:00
Okay. And then could you say something more about that BET inhibitor trial?

Dr. Scott Kopetz 32:11
Sure. So, this is through an unbiased screen where we asked, ‘if you have a patient or a tumor on encorafenib-cetuximanb, and we screen 1000s of different nodes for ways to modify and we find a node that really tends to be a vulnerability of the cancer, and that turns out to be a bromodomain, which is a regulator ofgene expression. And so there is actually an inhibitor of bromodomain, so we were able to then show the benefits there and bring that together into a clinical trial. So there’s a bromodomain inhibitor plus encorafenib and cetuximab. What it’s doing is, really for those aficionados, is deeper inhibition of the MAP kinase, as well as shutting down MYC signaling, which is a key survival mechanism. So it’s a really way to inhibit MYC, which is one of the key oncogenes.

Manju George 33:09
Okay, I think it’s sort of hard to get the word out to BRAF folks about this trial. Has enrollment been fairly brisk at NCI centers and academic centers worldwide?

Dr. Scott Kopetz 33:22
Uh, let’s see. So I’m not sure which trial?

Manju George 33:27
I think BREAKWATER.

Dr. Scott Kopetz 33:28
Oh, BREAKWATER, yes, it is. It’s going, you know, first-line studies are a little harder, because a lot of times we don’t always know the BRAF status by the time that patients start treatment. So it’s not quite as fast as BEACON but it’s going reasonably well. We’ll get it done. Not always as fast as we like, but we’ll get it done. And I think we’re kind of on track on projections at the moment.

Manju George 33:57
Yeah, yeah. I think that we are working with Pfizer to get, in COLONTOWN University, we are going to be having a featured trial, we’re doing that for BREAKWATER. So my other question would be, since you have those mouse lines that seemed very interesting, where you’re doing sequential treatment and testing, what kind of resistance develops. Are you also doing experiments where you’re doing the encorafenib plus cetuximab plus FOLFOX and seeing what else you can give those mice?

Dr. Scott Kopetz 34:25
Right, so, we haven’t pursued that. I think it’s an interesting area to say, ‘how do you even improve upon where the BREAKWATER is going to be’, right? But no, we haven’t started that type of work yet. But I like the way you’re thinking, let’s take a step ahead.

Manju George 34:44
Yeah, because I’m sure that in a year or two, then you’ll have lots of enrollment, and then people are going to be asking, ‘what next?’.

Dr. Scott Kopetz 34:53
So that’s right, – have something ready – because that’s right… we’re looking for good post docs to do that. If anyone knows of some good post docs out there, let us know.

Manju George 35:02
Okay, okay, yeah. So Annie says it was great to see that there was an epithelial to mesenchymal transition in preclinical research. Is that showing up in BREAKWATER patients too?

Dr. Scott Kopetz 35:15
Good question. We don’t know. You know, we don’t have progression biopsies on patients on BREAKWATER, orany biopsies, for that matter. So as phase III, they tend to not have that same degree of translational research. So we’ll have blood, but we can’t always assess some of these transition states, like you mentioned Annie, in some of the samples that we’re collecting. So we’re going to rely on other ancillary, smaller phase II studies or preclinical models.

Manju George 35:48
Okay, I think we have gone through this really fast.

Dr. Scott Kopetz 35:53
Wonderful. Yeah, no, that’s great. Well, thanks so much to everyone for the time and interest and happy to answer any other questions that come up offline.

Manju George 36:03
Thank you so much.

Dr. Scott Kopetz 36:06
Thanks.

Manju George 36:07
Bye

Dr. Scott Kopetz 36:08
Bye bye.

DocTalk
2023
Dr. Kopetz
BRAF
MSS
Trials

Dr. Scott Kopetz from MD Anderson Cancer Center discusses the BREAKWATER trial with PALTOWN Scientific Director Dr. Manju George. Recorded in May 2023.

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BRAF-mutated CRC updates

BRAF-mutated CRC updates

DocTalk
2022
Dr. Corcoran
BRAF

Dr. Ryan Corcoran of Mass General Cancer Center discusses updates for BRAF-mutated CRC with Paltown Scientific Director Dr. Manju George. Recorded in September 2022.

Manju George 0:00
Hello everyone. Welcome to Doc talks. I’m Dr Manju George the Scientific Director at PALTOWN Development Foundation, the nonprofit that supports COLONTOWN.Welcome to my first Doc Talk of 2026 and for those of you who are joining live, welcome. And I am so excited to have Dr Kopetz with us. And as many of you know, he’s no stranger to us in COLONTOWN. He’s an amazing oncologist, a very well known researcher , who designs these amazing colorectal cancer trials, and is a speaker at all the international and national conferences, and has received so many awards. And in between all of that, he finds time to engage with us, and for that, I’m so grateful. And he has many titles and honors, and I think to us, he’s a beloved oncologist who’s focusing on BRAF and KRAS mutated colorectal cancer. And so once again, I’m so thrilled to have Dr kopets with us to talk to us about the 2026 BREAKWATER updates. Welcome Dr Kopetz.

Dr. Kopetz 1:14
Yeah, thanks so much for such a delightful and kind introduction, and thanks for all that you do, and you really do such an amazing job of educating and advocating. And so we’re so grateful for community, for you as well. So delighted to be able to share some of the updates in BRAF.And I thought during this, I would take opportunity to kind of take a step back with a little bit of history, but then really talk about where we are. How are we thinking about this in 2026 so with that, I had to start with just the complexities that we’re dealing with. Don’t worry about interpreting all this. This is for the gurus in the field. There’s a Frank McCormick, he’s kind of considered one of the fathers of RAS and he’s kind of put together this pathway about all the complexities of how normal cells and then cancer cells signal. We kind of think about, and you may have heard in biomarker testing, kind of the key ways that colorectal cancer can acquire mutations. These can be through KRAS, NRAS mutations commonly, but also BRAF. And BRAF is a distinct entity. It’s probably the one that we were able to target first, but a lot of the lessons that we’re learning, and we’ll come back to this point that in BRAF are now being applied to KRAS G12C, and think in the future, G12D will be following right along in this path. So hopefully these wedges of targetable oncogenes will continue to grow.

Dr. Kopetz 3:05
Okay? I said BRAF was targetable. This now goes back for more than a decade where the kind of first inhibitors which some brilliant medicinal chemists figured out that you could actually target this specific mutation that’s present in BRAF. Now I’ll take a moment to say what we’re talking about is a BRAFV600 E, so it’s the most common mutation, but there are others. Now the others are a little more complex. Everything that we’ll be talking about in terms of targeting is really this most common V600E mutation. Others we’re not fully sure what to do with, because they’re so heterogeneous and complex. But the BRAF V600E, also common in melanoma, and some of the initial studies that kind of a classic one.

Dr. Kopetz 3:54
This is one of the first studies that we ran where we said, okay, let’s treat melanoma. Let’s treat colorectal the same and we got very different outcomes, and that kind of set us off down this path to try to figure out what is it that’s unique about colorectal? How do we better target that? So there’s really two main crux, right? We have to improve the shrinkage of the tumor. And then, importantly, really, really target the durability. And we’ll talk about that, about how can we keep the cancer, shrink it down, and keep it down for as long as possible? So a lot of the work has been trying to do both, and you’ll see progress has been made there. All right, so let me take a step back. If you were a medical student, maybe first or second month of medical school, you would get introduced this concept of homeostatic regulation and how it’s used in the body. But I think it’s a useful concept for us to understand, and it’s this idea that our bodies like to be in a certain condition and that they have feedback mechanisms to keep us in that that condition. And there’s the more critical the pathway is, the more critical that regulation is, the tighter the feedback is present. And it turns out that this growth factor pathway, we call it the MAP kinase pathway, it incorporates K RAS, NRAS, BRAF. Those are incredibly important for cell growth and healthy cell division, and so that the cells, especially the colon cells, have a lot of these mechanisms to keep that level of signaling just right. so this is homeostatic. And Walter Cannon really was the–and you can see how, just by virtue of the picture, how old this concept is, but we still see it.

Dr. Kopetz 5:58
So what does it mean? Well, when we are in normal physiology, you can think about your glucose levels, if you’re not a diabetic, about how tightly regulated that is, but even something simple, like your body temperature, right? So you go out and sit in the sun, your body temperature rises, your brain recognizes that. It then dilates your blood vessels and also induces sweating. And then the response is, your body’s temperature is restored, right? Very simple concept, but it’s this kind of regulation to say your body wants to keep its temperature in this really tight range, and it’s going to do everything it can to maintain that. So the same thing happens after targeting BRAF, right? So in a BRAF mutation growth signaling this tumor cell is has a level of signaling that it wants, and we can give an inhibitor of BRAF, but there are feedback mechanisms that this tumor uses to say, nope, nope. That’s too low. I want higher signaling in this growth pathway. And one of the things that does is it activates EGFR, and it turns out that that then reactivates the growth, and the signaling is restored from the concept of the cancer cell, right? So this is homeostasis from the perspective of a cancer cell.

Dr. Kopetz 7:29
Now, I know there’s a lot of aficionados out there, so if I were to do this and try to do this simplistic Frank McCormick figure, it would look like this, right? Where there’s this signaling cascade, where one protein, activates the next one, which activates the next one, and down at the bottom of that is growth, right? This is the signal that says cancer’s growing. So if we have the BRAF mutation now, green is kind of signaling, an activation that’s just pumping out signal– we inhibit BRAF, what happens? It gets shut down, right? So transiently, it does a good job, but what happens then is you get these feedback mechanisms that get de repressed. EGFR now gets turned on. It now signals around that inhibition. We’re still blocking BRAF, but there’s pathways to get around it, and the signaling is restored, right? So that’s why BRAF alone doesn’t work, because the tumor is adapting so quickly. Now, when you then now come in and block BRAF and EGFR together, that’s when you can shut down the system, right? It can no longer compensate. You block two key nodes and and that was the premise. So fast forward through a lot of clinical trials and work, the BEACON study was the first to really show this, that when you combine BRAF and EGFR, compared to a control arm, you can improve overall survival response rates in this setting, and this was in a later line population, where there’s improvements here from 5.9 to 9.3 months. So improvements, there’s a bit of a tail. This idea that a proportion of patients can really have a longer duration of that as well. And the overall the side effects that you can see here as well. So this was several years back, and resulted in approvals for the second and third line. But we want to do better, right? And so really trying to understand, well, how could we do that? What’s the path forward there?

Dr. Kopetz 9:47
So gonna take a step back to the lab, because I’m a physician scientist. So we tend to do something the lab, bring into the clinic, learn from the patients, bring it back into the lab, and kind of keep iterating. And so throughout all of this, we’re doing a lot of preclinical modeling of cancer. And so, how do we do this? Well, we use mice for this. And why mice? It’s kind of weird, right? Like, why do we use mice? Why don’t we use other areas or other model systems? So it turns out that we actually have a fair bit of similarity with mice, like 95% similarity to mice in our genetic code. A lot of the ways that the our systems work are very similar. And then there’s some practical advantages that we can house them in controlled environments. Can handle them, and they have kind of been used for decades, continue to be used for a lot of this testing, right? And so we’re really really, I think, thankful for the opportunity to learn as much as we can in these systems before we bring to patients, so we’re bringing better things forward.

Dr. Kopetz 11:04
So, you know, just want to advocate. This is kind of what what the mice look like. So we actually use these mice that don’t have any hair, so they’re called nude mice. So, and then a lot of times the tumors are kind of grown on the flanks of the mice, so we can put little calipers around it and kind of measure how things are are going and advancing. Now we take extraordinary care to provide a really good environment for the mice. We actually have veterinarians whose sole job is every day to check on the well being and health of the mice, and they get all sorts of like things to socialize together through all of this. And so just know that we’re trying to be really good stewards of this, and we don’t take this research lightly, but we know that it’s really important for our patients. Okay with that a bit of aside, because we like to show as researchers how can we do things right? And so one of the questions that we were asking is, how can we improve the targeted therapy, and we did an earlier study where we actually combined with the earlier generations BRAF and inhibitors with with irinotecan and we had patients that their disease responded. So we gave chemo, EGFR and BRAF inhibition, and not just BRAF and EGFR alone. And so the question was, okay, we had responders, and it was working, and we had some patients that were really generous, and they said we will be willing to do a biopsy so that you can take tissue out from my tumor and you can study it. And so we’re so thankful for the patient’s contribution to not only enrolling in research, but to support things like this. But what that allowed us to do is say, Okay, I’m going to take that piece of tumor, I’m going to take it back to the mice, just like you saw, and I’m going to grow that patient’s tumor on the flank of the mouse, and I’m going to propagate that tumor, so I can treat many different mice, and then I can treat that tumor with the targeted therapy alone, the chemotherapy alone, or the combination. And then ask the question like, if that model works, what was that the patient was responding to? They got three drugs. But did they need all three? Maybe you only needed two in this or our other one. And we were really intrigued. And I just showed three examples here, where you want to see things kind of going below the lines, the lower, the better, smaller the tumors here. And what we found was that the targeted therapy slowed growth. Chemo slowed growth, in two of the models, but you only really got regressions and things shrinking down when you did the combination. And so that was a really important finding for us. Now it turned out because I wanted to show all the data that one on the far right here. What that said is, you know what? The targeted therapy didn’t do anything. It was all chemotherapy doing the heavy lifting here, we would predict in this patient. And so we kind of expanded that out and looked at some really resistant tumors and showed that indeed, that when you combine this, we were using a full theory regimen, so irinotecan and 5FU, that you could really get these synergies and really suggesting that there is opportunities to improve outcomes and the durability through this. So that kind concept, as well as the idea to say, well, let’s try to get this into more patients sooner, really led to the idea of the BREAKWATER study.

Dr. Kopetz 15:06
And so what did we do? Well, designed this study, randomized 637, patients to a standard of care without targeted therapy at BRAF. Patients could still get BRAF and EGFR in second or third line because it was approved. But the idea is to start with standard chemotherapy in the control arm. Or EC, encorafenib, cetuximab and FOLFOX or EC alone as a kind of a third arm. And so we were trying to gather some data, like, do you need the chemotherapy there? And then we’re looking at progression free survival, response rate. Here’s the characteristics of the patients enrolled, and this really reflects a bit of what we see in kind of general practice here. So what do we see? So remember, we said we want to improve response rate and durability. So first thing we said is, let’s look at response rate. And indeed, if you look at the blue bar with the EC and FOLFOX now we had two thirds of patients approximately responding to the therapy, meaning the tumor shrank down by 50% or more, versus 37% with the standard of care therapy, a little more than a third. And that this was durable, and that was encouraging. So when we get a response and there was some increased durability, now one of the terms that we use to measure durability is progression free survival, as you’re likely aware. And so we looked at that progression free survival curve, what we saw was an improvement in progression free survival of seven to 12 months.

Dr. Kopetz 16:42
So what does that mean? I’m sure many of you are well versed in these curves, but I thought it was always worth to do a little bit of a primer about what this means. These are a measure of any time point along the way, the number of patients that are still receiving therapy and have not progressed. So we can look at this, and for example, we can see about it at six months time frame here, that 60% of patients were still on therapy and were free of progression. And over time, more patients progress, and you can see the curve coming down. And so by the time you get to 12 months here in the control arm, about only 30% of patients were no longer progressing. So we’ll say, Okay, that’s good. How do we describe the curves here? And so you’ll hear this term median, right? Well, what does that mean? Well, it means, really at that 50%, meaning half the patients progress before, half the patients progress after that time point. So the median here we use as our estimate. And you can see, you know, the median is a little over six months 7.1 exactly here in the control arm, but that median is closer to 12.8 months here in the in the experimental arm. Now we can use these numbers and now start to compare across different settings, BRAF has always been a tough or has not always felt to respond well to standard chemotherapy. FOLFOX, FOLFIRI alone, even with Bevacizumab, usually get like 6-7 months. Now, while the non BRAF colorectal cancer is usually around 10 months or, maybe 11 months. So this is really striking, because we’ve taken a tumor that had well worse than your average outcomes, and now with this regimen, now we have a median progression free survival that looks better than all the other tumor types, subtypes of colorectal cancer out there. So it’s a really big kind of chip. And I think, as we mentioned before, we also see this, this tail, and this gets a little noisy because we don’t have as long a follow up yet, but this idea of, this flattening here, and about a third of patients, even at two years, are kind of still ongoing, and that’s a much higher tail, as we say. So, the idea that there’s a subset of patients that we don’t fully understand why, but they get a really durable, prolonged outcome from this. So we need to know more. We need to make more people like that. So that’s one of our goals.

Dr. Kopetz 19:48
All right. Now we talked about, there’s a third arm, if you recall, right where encorafenib, cetuximab was used alone, no chemotherapy. And here’s the orange line for the encorafenib Cetuximab alone. So didn’t do better than the standard chemotherapy, but didn’t do worse either. So it is, it kind of is in that middle ground. The kind of interpretation of this is, you know what this is, typically the the EC alone is better tolerated than FOLFOX. If there’s a patient that is maybe not the best candidate for FOLFOX, can’t really tolerate it well, for whatever reason, there’s an option to at least do the EC alone, and that may be better than than other options for that unique case. But for most patients, we think that that is EC and FOLFOX should be there. Now, progression free survival is important, but remember I mentioned that well, the control arm could go on and they could get BRAF and EGFR right, and so is this just shifting when things are and if that’s the case, for what we really care about is, can patients live longer with this regimen?

Dr. Kopetz 21:08
And so that’s the overall survival– very similar. We use this median to say half of patients now, in this case, are living longer and half are living shorter than that estimate. But what we saw was that the standard of care about 15 months– what we expect on average, but that we’re able to double that number. So really, a doubling of overall survival is a really, a compelling number to see. And so now getting medium survivals that are much, much higher. What about that third arm? Kind of fell right in between. So, it’s not an unreasonable consideration to kind of start with that, but still not as good as the EC and FOLFOX alone.

Dr. Kopetz 21:59
Okay, thanks doc for showing all those complex slides. What does it really mean? So, here’s kind of that graphic summary, thanks to nano banana. I’ll say a little AI generated one. But what you can see here is that really, progression free survival, you’re reducing that risk of progression. And then that survival time is, in essence doubled, going from 15 to 30 months. Those are the kind of the key takeaways. Now, what about side effects here? Most frequent side effects are shown here, in this figure. And what we can see is that nausea, diarrhea, those kind of things that we normally think about with the chemotherapy, is about the same between these and that the real difference here is kind of in some of the BRAF specific toxicities. In this case, it’s looking at arthralgia and rash. So you can see that the combination of with encorafenib+ cetuximab can generate some rash. We use grading systems to grade one two, which means a more mild rash and arthralgia, and still impact quality of life. And so it’s something that we manage and work through with patients.

Dr. Kopetz 23:35
Now, one of the questions that’s come up is like, well, is this better than if we did really intense chemotherapy at the beginning. And so there are regimens where we put FOLFOX and combined with irinotecan and what we call the triplet regimen. And so this was just a bit of an aside to say that we looked at what patients could have gotten some of these more intense regimens, and then looked at some of the survival here. And the bottom line is that it didn’t matter in the control arm, if you use really intense chemotherapy that that really you got the best survival with the with the EC FOLFOX. Now we’ve been talking a lot about FOLFOX, and this is data from last year. So, but what about alternates? So we like our acronyms as we know and so FOLFOX, of course, is a 5FU oxaliplatin. Oxaliplatin is the neuropathy one. There’s the FOLFIRI, it is irinotecan and 5FU. And there are situations where patients, just may not be best served with FOLFOX. They may have had prior oxaliplatin exposure, may have had an early stage tumors, resected, got adjuvant FOLFOX, for example, and then the disease recurred later. Or maybe patients that have kind of diabetic neuropathy, for example, where they have other reasons for nerve damage. And then sometimes it’s just a lot of providers are looking at the side effect profile and just saying, you know, I just think FOLFIRI is a better choice in general to start with. And so all these things now to the credit of the sponsoring company for BREAKWATER they heard us when we said, we really want to have more options for our patients. And we want to generate data as well with with FOLFIRI. Right now, most companies, I would say don’t really do two studies to look at the same thing, but they heard us and and agreed to run this smaller study. So remember, before we’re looking at over 600, here we have like, 140 something patients.

Dr. Kopetz 26:02
And now this is just after the BREAKWATER finished enrolling. We then opened and enrolled this one. Endpoints, response, rate, side effects, very similar here. There was, interestingly less arthralgia and rash in this one, not sure I fully understand it, but it was that’s kind of what we saw there, but really low rates of grade three toxicities in general. So didn’t add much in terms of toxicity. Here again, we saw very similar, about two thirds of patients responding versus about 39% of the control arm there. So encouraging that there’s that much higher response rate, even with a FOLFIRI backbone. And overall survival, really early, we will have some updated data we’ll be sharing in Jun. But that this kind of really nice early separation of the curves that were similar in magnitude to what we saw before. So that’s great. It tells us FOLFOX and EC can be a backbone. FOLFIRI and EC can be a backbone.

Dr. Kopetz 27:15
So wanted to spend maybe the last few minutes and just talk a little philosophically, and that little more of the science here, right? So one of the questions is, wow, we’re doubling overall survival, not by bringing a new drug in, but by taking a drug that we would normally give in second and third line, and now combining it with our first line regimen. What gives? Yes, maybe it’s better, but why a doubling in overall survival? And, I shared some of that kind of concepts pre clinically, and I didn’t get into a lot of the deep science that led us to think that this could really work. But one way to really think about this is that when we give chemotherapy alone, and these are completely arbitrary numbers. We give chemotherapy alone, there may be 10 different ways that the tumor cells can develop resistance. When we give BRAF EGFR inhibition, again, maybe 10 different ways that resistance can develop, including acquisition of KRAS and NRAS secondary mutations, for example, which are really well described and and I didn’t present that data, but this idea that other mutations can develop that can reactivate the pathway. Now the concept, though, is that a new KRAS mutation is not going to make them resistant to FOLFIRI, right? And likewise, some of the resistance mechanisms to the chemotherapy may be blocked by BRAF and EGFR. And so it’s not that the cancer can’t find a way to develop resistance. Gosh, it almost always does, but we’re just making it much, much harder. So the idea is that the shared pathways of resistance are constrained, so that’s this lower level of number of mutation or resistance pathways that can occur. So by putting them together, you really make the tumor work hard to find some mechanism that will result in resistance to the chemo and resistance to the targeted therapy together.

Dr. Kopetz 29:25
Now it’s a great theory. Did we actually see any data about that? Like is what we have there? So I mentioned that, and we did a lot of work and published papers around different mechanisms of resistance to BRAF and EGFR when it’s given alone. These secondary mutations are kind of the key ones that we see. So what we did is presented some of the data on the CT DNA, so you can use circulating tumor DNA to explore the mechanisms of resistance there. And what we showed was that by month seven in the targeted therapy arms of the of the BREAKWATER study that EC alone, about 38% of patients already had these resistance mutations that were developed and evident. They developed KRAS variants, NRAS, MAP2K1, which is downstream, amplifications like MET or BRAF exon deletions, all these things that have been shown. But when we combine it with chemotherapy, now there’s no selective pressure, really, to generate that the chemo can keep the cancer from growing, even with those. And only 6% of patients at month 7 in the combination arm had that mechanism of resistance. And you can see, even at the end of study, after prolonged treatment, that we were seeing much lower rates of these secondary alterations. So we’re trying to and this is really where we are at the frontier of trying to understand this, is kind of the idea to say, how can we constrain the mechanisms of resistance. What are those two remaining shared mechanisms that are allowing the cancers to evade? We don’t think they’re genomic. They’re not acquiring second mutations, necessarily, that’s driving this, but there’s some tumor plasticity, state changes that are occurring. These are kind of the terms you’re hearing in oncology field now about what’s the plasticity of the tumor, like, how is it adapting to these different states? So stay tuned. But this is really where we’re working on it. We’re trying to nip these remaining things in the bud.

Dr. Kopetz 31:42
Okay, so adaptive resistance, you got your primer on homeostasis, right? There’ll be a test later on the homeostatic regulations, but this combination of BRAF and EGFR blunts that. It is a standard of care, but that the chemotherapy combinations have compelling biologic rationale, as well as the really now strong clinical data, doubling overall survival. And so that we do think that EC and FOLFOX, and I would say EC and FOLFIRI as well, are a new standard of care in the US and and I think this is even when you compare to the really intense chemotherapy there. The key for all of this is that in order to actually act early and take advantage of all this great biology, you got to know what your molecular subtype is, and so this is why one of the key things about this is molecular testing early. Don’t wait till second or third line of treatment to really start to act on the molecular subtype of your tumor. It’s really important for patients to understand their molecular subtype at diagnosis and act on it, if there’s ways to act on it, and so that’s really a challenge for us to make sure we’re communicating that to oncologists throughout the US and throughout the world. And I think increasingly we’re seeing that most, most providers now, are getting that molecular testing done and and making treatment decisions early. And just want to end by thanking the patients first and foremost. We are always trying to do better, and this is always bittersweet. When we see advances, because we see progress, but we also recognize how far we still have to go. And I just wanted to thank the the patients in the past who really participated wholeheartedly and in these, this clinical trials and the patients in the future that are still upcoming, and where we hope we’ll have better therapies to offer. So with that, thanks and happy to take some questions.

Manju George 33:57
Okay, thank you, Dr. Kopetz, that was an amazing presentation. As always, you take us through hard concepts, explaining them very simply. So thank you very much. So with questions, in COLONTOWN, people have posted some questions, and I had emailed you them, so maybe we can start with those, f you’re okay,

Dr. Kopetz 34:20
Sure, absolutely.

Manju George 34:22
Yeah. So the first question is, of all the patients on the different E plus C combinations, what’s the longest time in your experience someone has been on it? And the second part of it is, what do you think is the reason? Like, what have we learned?

Dr. Kopetz 34:39
Yeah, great question. I don’t know the answer yet about why. So we’ve had some patients that are now four years or so, on some of these combinations. The front line, chemo, plus a lot of times, what we’ll do is just continue the 5FU and encorafenib, cetuximab, and we’ve had patients on that two and a half years going on three so that really there is a subset of patients who can do really well with it. We don’t understand, we don’t know, if the tumor has some biology that’s called adaptive mutability, which is how the tumors change, in essence, they kind of turn themselves in and increase the rates of their secondary mutations, so that this is one of the ways the tumors can adapt. They start making more mutations. Each time they divide, they have more mutations. And the hope is they, imputing a lot of of intent to them, but the idea is that they, as they develop a lot more mutations they can find, stumble across other mechanisms of resistance. So there is some hint, maybe, that some of these really patients with really long duration don’t engage this adaptive mutability pathway, so their tumors don’t use this as a mechanism. But that’s I think, work that we still have to sort out.

Manju George 36:24
Okay, thank you. The next question is, what advice do you have for someone who was on FOLFOX plus E plus C and is now on maintenance 5FU plus E plus C. Is adding irinotecan to this at progression a good idea. If not, what else can they get?

Dr. Kopetz 36:44
Yeah, great question. So one point, not the question, is that when there’s this inclination, no one likes the pump, I get it, right? There is this inclination and maintenance to say, well, EC is working, what if we just stopped the pump as well as the oxaliplatin, right? And I really, I think that biology suggests that you need that 5FU, so I would say, try to maintain the 5FU now, the great question was, should we add more on to that? We just don’t know, to be frank, on this, I think, there is this sense that trying to put something into it before progression may not be the best approach, but we honestly just don’t have a good sense of this yet. I think we have tried it in some patients where you’ll start to see things kind of creep up. It’s not that full resistance is developed to 5FU and encorafenib Cetuximab, we either add the oxaliplatin in, or, if there’s neuropathy, add in the irinotecan, alternatively, so and that can work. The question is, is that better than than using irinitecan later, we just don’t know.

Manju George 38:07
For someone with a sustained response to E plus C and E plus C plus FOLFOX who is now progressing, what’s the best option next? Yeah, similar question.

Dr. Kopetz 38:19
Yeah. Great question. So there’s a few approaches there. There are studies to say, remember we talked about that these tumors are really dependent on this MAP kinase pathway. So there one approach is to say, well, let’s double down on this inhibition. And there is another protein downstream called ERK and so there’s a next generation ERK inhibitor. We tried ERK once, but that was really intermittent ERK inhibition, and that didn’t work. For the officianados, that had been tried once, but we think there maybe a better inhibitor. So there’s a study ongoing to double down on that pathway inhibition. The other is, we talked a little bit about the plasticity and the state changes. And so we have a study through the ETCTN or the NCI, federal government sponsored study, where we’re trying to use an epigenetic modifier. It’s called a BET inhibitor, but the idea is that it really inhibit some of these state changes. And so that’s a study that’s enrolling right now. And then there are studies to kind of ask questions about, well, what if you go and you do something else altogether, right? Like, if you haven’t gotten FOLFIRI, maybe you go and get FOLFIRI, you give it a break from EC. And what we see is that a lot of times, the tumors will rewire in order to evade the FOLFIRI. Sometimes they’ll shift back into a state that becomes EC sensitive. And so this idea to say, can you do what we call a re challenge, which is do something separate from MAP kinase targeting, and then come back and hit again with the MAP kinase. We see benefits with that with the EGFR inhibitors. This is a RAS RAF, wild type tumors that you can inhibit EGFR and then take a break and then come back and do EGFR alone. So that’s another strategy, but I think there still is a lot more that we can do.

Manju George 40:26
Okay, okay, thank you. So I think that brings us to the next question where people have asked, Can the BEACON and BREAKWATER regimens be reused? And then, if yes, like with EGFR inhibitor, we say, like, four to six months. Do you have any idea what’s the break that people would need?

Dr. Kopetz 40:48
Yeah, we don’t, to be frank, I think, we would typically check Ct DNA to make sure there’s no secondary mutations. All those are uncommon after BREAKWATER. But can be seen. So just make sure those have gone away. Because if you can still see a KRAS mutation present on CT DNA, then maybe it’s not long enough. You give it a little more time. But you’re right, we kind of think about, four month or so time away. It may be enough to have the tumor resensitize,

Manju George 41:25
okay, okay. And then the next question is, for people who miss the first line option of breakwater, what’s your advice on using this in second line or third line?

Dr. Kopetz 41:36
Yeah, great question. I think it does give us confidence that, bringing EC in combination with chemotherapy may be better than EC alone. So the the SWOG study that I showed the one with then looked at and second or third line looked at, in essence, BRAF, EGFR, with irinotecan, and that showed activity. And so I think if, for example, you got FOLFOX alone, I think there’s a rationale to say that you could do an EC, irinotecan, or EC FOLFIRI, in a second line setting. In that sense, all we have are these kind of cross trial comparisons to suggest, so in it, and we don’t have that, what we say level one, randomized data, but that tends to be my practice in those situations.

Manju George 42:35
Okay, thank you so much. The next question is, what’s the status of the E plus C Nivo trial. Do you have some updates?

Dr. Kopetz 42:44
Yes, so we’re going to be so that is a small kind of phase II study that is trying to build on the EC nivo single arm data there. The hope is there’s a subset of patients that may be deriving benefits from the nivo. So that one we should be able to present at ASCO this year. So we’ll have some of that that it was small the control arm was I think less than 30 patients there, but we’ll have that data.

Manju George 43:22
Okay, okay, thank you. So the next is, what is in line next, in terms of new regimens, now that breakwater is done, where’s the field heading? What’s cooking in your lab?

Dr. Kopetz 43:36
Yeah. So we’re really interested in the these epigenetic state, inhibition, I think the the idea to say that, that there’s a subset of cells that are kind of are adapting in some way to evade the those therapies. And if we can understand what those dynamic changes are, then we can potentially, kind of come in with inhibition and and look at different ways, the different vulnerabilities that may come up now. These can take the form of, potentially, thinking about ways to combine it initially, like, how do you extend duration when combination? Or can you understand these paths of resistance and then, kind of treat upon progression? So we’re trying to explore both ways.

Manju George 44:39
Okay, okay, thank you. So I’m done with those questions, and then here we have some Q and A questions. So those who are listening, if you have more questions, please add them in there. So the first question is, if there is a chemo for life patient, is there an argument to be made to do standard of care followed by E plus C or vice versa to prolong longevity rather than use the efficacy of both treatments together?

Dr. Kopetz 45:06
Yeah, no, that’s a, I mean, that is, that’s the angst, and I think that’s what surprises us about BREAKWATER. So the control arm, even if we limit to those patients who and the majority of patients, had access to BRAF, EGFR and second line in the control. So this was that study, in essence, the say standard of care chemo, followed by EC. How do patients live longer than when you put it all together? And the short answer is, it really matters, when you put them all together, that there’s a true synergy. It’s not kind of a one plus one equals two, but you’re getting much more. We think it’s because of and I know this looks like this question was like part way through my lecture, so hopefully I answered it with the kind of explanation of the how we’re trying to constrain the mechanisms of resistance. But I really think the data suggests that in this case, at least, it’s not about stringing it out, but really about bringing the best regimen together at the beginning.

Manju George 46:09
Okay, thank you. The next question is for can this drug regimen be used for patients without a BRAF mutation?

Dr. Kopetz 46:19
Yeah, great question that the short answer is, not, at the moment, there are, there been kind of different areas to explore in this space to kind of think through how you know what BRAF can do. One little bit of an aside is that there has been a recognition that the skin toxicity of the BRAF and EGFR combination is much less than you’d expect with EGFR alone. So the Cetuximab rash kind of acneform, kind of face trunk, but when we give the BRAF inhibitor, it’s actually less. They actually have much less, patients still have some skin rash, but it is substantially less so one of the areas has been like, Okay, well, could you use BRAF inhibitor to try to modulate some of that toxicity? But now, instead of taking it as encorafenib, as a pill trying to reduce that toxicity, there’s a company that’s actually made an essence of BRAF inhibitor skin cream. And so the idea is, could you just put a BRAF inhibitor skin cream on and treat the EGFR rash there? So that’s one kind of creative way where the BRAF inhibitors are being utilized there and I think in some extent, these drugs were engineered to be more potent against the mutated form of the protein. So that mutation is not there, it makes it a little harder to kind of utilize it, although I still think there’s some creative opportunities there, we just have not fully explored.

Manju George 48:07
okay, but in general, like to as a line of treatment for somebody without a BRAF mutation. You don’t generally recommend it?

Dr. Kopetz 48:16
yes, I should just be clear with that. No, we shouldn’t use it. There’s really no data about using encorafenib for anything but that BRAF V 600 E. Now the corollaries we also, I talked a little bit at the beginning about what about other BRAF mutations? And I think the data really has not.. we’ve tried for some of them. There’s different classes as we talk about them and characterize them, we tried these in different ones, and they have not provided benefits. So I know it’s tempting, because sometimes you say, Well, my report says a BRAF mutation, but they behave very differently than the V600E.

Manju George 48:51
Okay, thank you, for those who can only tolerate E plus C alone. Can it be continued once progression occurs, will it slow growth? Does it have to be stopped once progression occurs?

Dr. Kopetz 49:06
Yeah, so good question. We don’t fully understand all the dynamics of it. What we can say is that when we’re doing EC alone, that the mechanisms of resistance tend to be genomic, and kind of a get acquired pretty robustly. So we do think in those settings that kind of stopping the EC is beneficial, and that doesn’t necessarily result in any kind of progression or that continuing, it doesn’t result in more inhibition of the growth.

Manju George 49:46
Okay, so the next couple of questions, like in the BREAKWATER trial, do you have some data on whether people were able to get to surgery to resectability?

Dr. Kopetz 49:57
Right, yeah. So we do. There is some data suggesting, perhaps, that more patients may be able to get to surgery. We just, we need to kind of get that data little cleaner. It’s been a complex area, because there were several years because of the biology of BRAF and the outcomes, surgeons had just said, I’m not going to take a patient with a BRAF mutation to surgery. I just don’t think that it’s kind of beneficial in that regard. I think now the field has shifted a little bit, and people are more willing to do that, and we are seeing that, we are seeing anecdotally even, that some patients that go to the or for resection of their metastatic disease can have complete pathologic responses, which is just really extreme, great response to the treatment.

Manju George 50:53
Okay, okay. And then the next thing is do you have some breakdown of the people on BREAKWATER like, what kind of mets? I think you had the table, right? How many people had peritoneal Mets, and how did they respond?

Dr. Kopetz 51:09
Yeah, we don’t have breakdown by sites. It’s a great question. And so that we don’t have that data to say, you know that this group of patients perform better than the others. We do have in some of our waterfall plots, we can try to tease that out by eye, and then there are kind of we call forest plots, that have looked at that. The numbers are just small, but it looks like, in general, they’re performing better, but we don’t have, like, a breakout of response rate, for example, by peritoneal mets in particular.

Manju George 51:50
Okay, so next question is, what trial options are available for BRAF patients after BREAKWATER, you mentioned the BET inhibitor, right? Like, what else?

Dr. Kopetz 52:02
ERK and the rechallenge are the main ones that are out there right now being explored.

Manju George 52:08
Okay, the next question is, can you speak to any BRAF targeted therapies that are in the pipeline that are expected soon?

Dr. Kopetz 52:15
Yeah, so there’s work on on degraders. So degraders are one space. The idea is, instead of inhibiting it, can you grab the BRAF and just pull it and destroy it? So just kind of chew it up. Now, the cell remakes it, so you have to keep grabbing the BRAF and destroying it. So that’s kind of one of them. There’s been other areas to try to improve upon them. Kind of these next generation BRAF inhibitors that has some characteristics about how the different BRAF and CRAF and ARAF all kind of linked together. So these other family members, it’s B, because there’s an A, B and C, by the way, in case you want to know where the B came from. So there’s these other family members in the RAF family, how they interact. So there are some smart chemists out there trying to sort that out. We don’t necessarily know that they’re going to be better than what we have right now.

Manju George 53:19
Okay, okay. And then what about immunotherapy combinations? Is anything new being tested?

Dr. Kopetz 53:26
Yes, we have the PD-1. And that was done when we are looking back in the preclinical models. And again, always trying to learn everything we can and thinking about other strategies. The intriguing thing is that it really looks like that more than PD-1 is CTLA-4 that is the one that’s driving a lot of benefit, which is a kind of a common theme we’re seeing in in colorectal in general. That PD-1 is okay, but CTLA-4, really, is kind of what induces a bit of greater responses. So there is some intriguing data to say if we had the SWOG study that the encorafenib, cetux nivo study, would a CTLA-4 be better than that. So, these are things that we just have to try to prioritize the questions that we ask and try to understand if that’s going to be better. The other is vaccines. So there are some. There’s been a lot of push. Elicio, for example, the company that’s been generating K RAS vaccines for pancreatic cancer and then for colon and many others have been whispering in their ear to say, think about BRAF. Think about BRAF. So that’s on their radar. And so the hope is that maybe there could be some vaccine strategies to to kind of follow since we are talking about a single point mutation. So it’s kind of well aligned for that.

Manju George 55:06
OK. Next question is, are we close to a CAR-T, options for BRAF V600E?

Dr. Kopetz 55:15
Great question. We don’t see anything. I don’t know I say close, I mean, I think CAR- T’s have just been tough to try to find the cells that can get into the tumor there. So, so I would say we still have a little bit of way to go to even get CAR- T’s, in general, in solid tumors working. But we’re starting to see some, some progress. The difficulty is that you know when you have a single point mutation, that it’s getting expressed by a TCR, and these are really more like TCR TIL therapies where you’re trying to target the BRAF itself is that you’re looking for just a single mutation, and sometimes it’s hard for the immune system to tease out, like, really small differences in there. A lot of the CAR- T options are targeting completely separate proteins that are on the surface of the tumors. So the CAR-T’s are coming in and binding something on the surface that may not be related to V600E, so maybe that some of the CAR- T therapies being developed can be applied to BRAF population, but may not be BRAF specific.

Manju George 56:33
Okay, okay. And then in the BREAKWATER results, do you see a difference in patients who are younger with the BRAF mutation versus the older, right sided tumors. Is there a difference in outcomes?

Dr. Kopetz 56:47
Yeah, so that we have some data on early onset BRAF that says that they are deriving benefit from the therapy just as well as patients that are average age of onset. So I think the you know some subtle differences, but that there are some distinctions. Now, BRAF, in general, tends to be associated with MSI high in later onset BRAF, so I guess the caveat is that early onset less likely to have a BRAF associated with MSI high more likely to be MSS, but within the MSS BRAF, they tend to do the same as average age.

Manju George 57:36
Okay, okay. And then this is my other favorite question. So, with the pharmacogenomics testing, because we are combining E plus C with FOLFOX or FOLFIRI. Do you think that there can be more tailoring of the chemo part of the regimen so that people can stay on it longer? Are there any efforts to do that?

Dr. Kopetz 58:01
So, you know, we’re still, I would say, nascent in our understanding of pharmacogenomics. We know for irinotecan, UGT1A1, there’s some older data about the utility of that to kind of tailor things that really is more relevant for higher dose. irinotecan, kind of saturates a lot of the metabolism transporters, for the doses that we’re giving every two weeks, it’s kind of less relevant. So there has been some discussion like, Well, gosh, could you increase the dose of irinotecan in a patient that may have just the right pharmacogenomic subtype there, and I think that there hasn’t been a lot of work being done on kind of dose escalating the chemotherapy based on pharmacogenomics. But certainly a possibility. The problem is we don’t yet have pharmacogenomics for why the patients are responding to BRAF, for example, so we don’t have good answers there.

Manju George 59:03
Okay, okay, I think we are at time. And thank you so much. This was an incredibly informative talk, and I hope we can have you back when you have new trials and give a talk.

Dr. Kopetz 59:18
Yeah, always a delight.

Manju George 59:20
Okay, thank you. Thanks to everyone who was able to join. And as I said before, a recording of the video will be posted in COLONTOWN University in about two weeks. Thanks. Thank you, everyone. Thanks. Bye. Dr. Kopetz, bye.

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2022
Dr. Corcoran
BRAF

Dr. Ryan Corcoran of Mass General Cancer Center discusses updates for BRAF-mutated CRC with Paltown Scientific Director Dr. Manju George. Recorded in September 2022.

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HERKULES-3 trial for BRAF and RAS

HERKULES-3 trial for BRAF and RAS

DocTalk
2022
Dr. Lee
BRAF
KRAS
MSS
Stage IV
Trials

Dr. Michael Lee of MD Anderson discusses the HERKULES-3 clinical trial for BRAF and RAS-mutated GI cancers. Recorded in December, 2021.

Manju George  0:00 
Hi, everyone. I’m Dr. Manju George, the Scientific Director of Paltown. Today we have with us Dr. Michael Lee. He’s an assistant professor at MD Anderson. And he finished his MD from Duke University. And he’s board certified in internal medicine, hematology and oncology. Dr. Lee, I’m really excited and happy to have you here with us. Please take it away.

Dr. Michael Lee  0:24 
Thank you very much. Can I just confirm you’re seeing my slides and slide screen view?

Manju George  0:30 
Yes, I think yeah, yes.

Dr. Michael Lee  0:32 
There we go. All right. So I’m very pleased to be here. Thank you so much for inviting me to talk about this exciting new study, that we and many other centers are getting underway, looking at novel targeted therapy combinations, particularly focused on this new class of drugs called ERK inhibitors, in certain molecularly defined subclasses of colorectal cancer. This is the HERKULES 3 study. So just as a way of background, cancer cells in general, or cells in general, are very finely tuned regarding when they proliferate and multiply. Typically, when a cell multiplies, it only does so in response to when the environment is right. And usually in that situation, there will be molecules called growth factors released around the cells and these bind to receptors on the surface of the cell. In particular, in colorectal cancer, something called the epidermal growth factor receptor, or EGFR is a very important growth factor. Now typically, when this binding occurs, this triggers kind of the cascade of proteins being activated into an active state, and kind of propagating the signal through one protein through another through another, until it eventually leads to a number of cellular changes that actually cause the cell to multiply, you can think of these intermediate steps as a series of molecular switches. In particular, this MAP kinase pathway, so to speak, which is downstream of this EGFR receptor is a very important kind of modulator of cell multiplication. Normally, this process is very tightly regulated, as I said, in a normal cell. However, in the process of colorectal cancers going from a normal colon cell to a cancer cell, typically, these cells acquire abnormal activating mutations in one of these molecular switches. And we know that a significant proportions of patients with colorectal cancer actually have activating mutations, in one of these key genes, that eventually leads to this kind of pro growth switch being turned on all the time, inappropriately.

Dr. Michael Lee  2:41 
So we know about 45 to 50% of patients have a mutation in a gene called KRAS or NRAS, which causes constant activation of these growth pathways. Another 5 to 10% of patients have activating mutation in a gene called BRAF, with the particular mutation in BRAF called the V600E mutation most common among the BRAF mutations. These are very clearly driver mutations driving the biology of these cancers. And while we’re starting to develop new therapies, kind of targeting these very clear potential vulnerabilities of these cells, we need more novel, more effective therapies for these ranges of mutations.Clearly, the cells are being driven by abnormal signaling through these kinds of constantly turned on genes. And if we can find more effective ways to switch off these genes, or kind of block the downstream signaling that is a consequence.and this is a potentially very powerful strategy. ERK is one of the key downstream kind of effectors –downstream of activated RAS or BRAF. ERK is one of the last kind of switches that then goes on to directly activate a number of these kind of transcription factors that cause the cell to go on to multiply, and so on and so forth. So it’s one of the last common nodes in this pathway that we could target. And kind of because it’s further downstream, there’s a lot of preclinical and laboratory data showing that targeting ERK maybe a particularly potent strategy, even more so than targeting some of these upstream components. And in fact while they’re not currently ERK inhibitors that are FDA approved, there are several novel ERK inhibitors that are being developed, and one that’s particularly exciting is being studied in the HERKULES 3 study. This is the ERAS-007 compound. This is an oral pill based treatment, that’s a selective inhibiting ERK and it’s been active in the laboratory. So without going into too many nitty gritties actually, shown here are on the left hand panel are a number of mouse models of KRAS or BRAF, mutated colorectal, or pancreatic, or other cancers. And you can see here the red line on the bottom actually shows the activity of the ERK inhibitor, which was previously called a different name. And you can see that kind of when you looked at it compared to other kinds of earlier ERK inhibitors, or other classes of drugs targeting upstream like at MEK or BRAF, that the ERK inhibitor, at least as a single agent for a limited period of time in these mouse models seem to have the most promising level of activity. On the right here, you can see specifically in a range of colorectal cancers, that the ERK inhibitor was active in the majority of the mouse models that were studied. And in particular, here, the shaded kind of  maroon or blue bar show KRAS or BRAF mutated mouse models where you can particularly see benefit.

Dr. Michael Lee  6:00 
Now, with all that being said as much as  we’ve studied single agent or inhibitors and the early phase studies looking at single agent drugs, we know that from long experience with kind of inhibitors of this pathway, that you have better activity for a longer duration of time, if you target in combinations of therapies. Without going into too much detail, generally in the past when we tried targeting this path of the single agent, for example, MEK inhibitors or BRAF inhibitors, there’s been a lot of kind of adaptation within the cancer cell, that kind of reactivates upstream signaling, and it can kind of bypass the level of drug inhibition. As a consequence, we’ve learned that we -and studies in the lab have also shown- that we have better outcomes, if you treat with combinations of therapies, we really think the best chance of having more activity that’s clinically significant for our patients, is using combinations of ERK inhibitors with other rationally targeted drugs. So one combination that’s being studied in the HERKULES-3  study in KRAS and NRAS mutated patients, which again, about 45 to 50%, of colorectal cancers, is combining this ERK inhibitor with a compound of drugs called the cyclin dependent kinase 4/6 inhibitor CDK4/6 . The reason this is rational is that one of the other key pathways that is activated when you have activation of the signaling pathway, it leads to activation of CDK 4/6 –which is very important for helping the cell multiply its DNA and ultimately divide. The cell cannot multiply and divide without actually going through the cell cycle process to replicate its DNA. So if you can block that process, the thought is that if you’re blocking it at 2 different levels, both kind of at the ERK inhibitor level plus at the cell cycle pathway level, that this would be more effective. Andactually, our laboratory has shown that impairing that kinase pathway in combination CDK 4/6 inhibitors was synergistic -was particularly effective- in a range of KRAS mutated models, both in cells in the laboratory and also in mouse models. And consequently that’s combining ERK inhibitors -which again, as we think would be a more potent strategy with the CDK 4/6 inhibitors- we’re hopeful will be even more likely to be effective. Palbociclib  is the drug that’s being studied in combination with the ERAS-007 compound. And this is a CDK 4/6 inhibitor that is actually currently standardly used in some other cancer types, like breast cancer,  is being studied in clinical trials in a number of other cancer types as well, typically in combination with other kind of targeted drugs. And so that’s one rational combination that we’re looking to study. In the BRAF mutated patients, this study will be looking to combine ERK inhibitors with other targeted therapies, targeting BRAF. In particular, as we’ve kind of learned in the last couple of years, the current standard of care for patients with BRAF mutated Colorectal cancer is to treat with a combination of drugs called encorafenib and it is a BRAF inhibitor directly impairing BRAF. And again, kind of talking about this multi level inhibition strategy, combining it with a drug targeting upstream at the EGFR level, called cetuximab. So the combination of encorafenib and cetuximab is currently FDA approved for BRAFV600E mutated colorectal cancer.

Dr. Michael Lee  9:40 
And this is based on the positive results of a large phase III study the Beacon CRC study, which did kind of represent an important advance in our management of these patients with BRAF mutated cancer. While this was absolutely an important step, we also know that there’s more improvement to go. We know from the Beacon CRC study that the response rate among patients was about 20%, which means only about one in five patients were having a significant shrinkage of their tumors, the remainder of the patients are having stable disease or even growth, despite this being our kind of active, a combination, targeted therapy approach. We know that the median duration of time that patients did not progress through the study was about 4 months, 4.3 months, and the median survival for the patients receiving this combination was 9.3 months. Now, this was actually a significant improvement compared to the prior standard treatment. But I think we all acknowledge that we want to improve on these numbers, there’s more we need to do for these patients. And that’s motivated kind of new strategies to look at how can we build on this ground to further improve outcomes here. There has been a range of laboratory studies that actually shows that another level of inhibition, hopefully more potent inhibition, would better allay the resistance that can develop when you’re treating with just the BRAF inhibitor plus the EGFR antibody. For example, we’ve seen that you can see emergence of small sub clones of mutated cells with other kinds of resistance mutations elsewhere in this pathway, which renders resistance to just the encorafenib and cetuximab . And as a consequence, there’s additional preclinical data showing that adding an ERK inhibitor, like ERAS-007, to the BRAF inhibitor and the EGFR antibody, may well be more effective in treating or preventing the onset of resistance. And that has motivated another arm of the study looking at encorafenib and cetuximab plus ERAS-007.

Dr. Michael Lee  11:44 
Now you may be asking, what do we know about the tolerability and side effects ERAS-007. So this is a drug that was previously studied in a single agent, prior clinical trial. So they looked at just the tolerability of ERAS-007 alone. I will note that in that single arm study, while this was a single drug given –not even a combination, there were some patients with a range of BRAF or other RAS mutated cancers that actually did have significant shrinkage of their tumors. Now granted, none of the tumors that shrink was meant to be colorectal cancer. But I think this does provide an important proof of concept that this ERK inhibitor approach can be quite potent in the right patient with the right kind of mutational profile, further motivating this, the HERKULES 3 study. The side effects from this study were as expected, and generally included side effects we would have expected with this class of drugs we have learned to manage pretty well. And they include things like nausea, diarrhea, rash, and eye side effects, which do require kind of being vigilant for any new changes in vision or other concerning eye side effects. And the study does require ongoing eye exams just for safety through the course of the study. With that being said, these are side effects that are pretty common to this class of MAP kinase inhibitors. And so these are not unexpected per se, and certainly things that we would aim to be able to manage with supportive care.

Dr. Michael Lee  13:18 
So that’s motivated the HERKULES 3 study. So this is a study that has two different arms based on the mutational profile of the patients. This study at present is currently up, enrolling patients only who have either a KRAS or NRAS activating mutation –again, about 45 to 50% of patients, or patients who have a BRAF V600E mutation, about 5 to 10% of patients. Unfortunately, if your cancer does not harbor one of those mutations at this point, you would not be a candidate for this study, just based on the principle that we’re trying to kind of find the best personalized approaches based on the underlying mutational profile. There are other trial options. Aside from HERKULES 3 for patients who don’t have a mutation in any of these genes. Patients who have a mutation in KRAS or NRAS as I mentioned, they will be studying the combination of the ERK inhibitor ERAS-007 with the CDK4/6 inhibitor, palbociclib. For patients who have a BRAF V600E mutation study will look at the combination of the ERK inhibitor ERAS-007 with an otherwise standard approach of encorafenib and cetuximab.

Dr. Michael Lee  14:36 
It is important to make sure that patients who are interested in this study know what the key eligibility criteria are when at the point in their disease, it is really important for you to be evaluated for this study. All clinical trials have particular time points –or are kind of they’re designed around particular points in a patient’s journey with typically stage four colorectal cancer, at which they should be considered for the study. And if you’re not quite at the right point in your journey, the trial would not be the right fit for you. So in particular, the HERKULES 3 study is looking at patients who have had some prior standard chemotherapy regimen. So for the most part, this specific study is not for patients who have had no prior therapy. But usually they will have gotten a standard prior chemotherapy based regimen. It also requires that they haven’t been given drugs that are usually given in patients who are more refractory to standard chemo therapies, drugs like regorafenib or tipiracil/trifluridine — these are oral drugs that are FDA approved, are usually given after kind of prior lines of IV based chemotherapeutic regimens. And so, if you’ve gotten one of those treatments before, this wouldn’t be a good fit. So you really should come evaluated for this study, before your oncologist is talking about putting you on regorafenib or tipiracil/trifluridine, because if we start that you won’t be eligible for this study anymore. It also requires the patients who have not had prior RAS, MEK, ERK inhibitors, these are not currently standardfor patients. So I wouldn’t expect you to have gotten this unless you were on a prior clinical trial. And while the criteria are evolving, it’s preferred that patients with the BRAF V600E mutation have not previously received encorafenib and cetuximab. So ideally, if your oncologist is talking about putting you on that combination, you would kind of quickly get into a center which has the study open to try to get onto this study, if you’re interested.

Dr. Michael Lee  16:45 
I think a lot of the patients are probably familiar with clinical trials.gov. But you can get more information for this study, look up the sites that are currently enrolling on the study, because it’s several sites, not just MD Anderson. So you can go to clinical trials.gov and type in a keyword like HERKULES 3 or this specific identifier number. This was just kind of the header. But if you scroll down, you’ll see more extensive inclusion and exclusion criteria, the sites that are currently enrolling, contact information for the study. So I would encourage anyone who’s interested to go to this site for more information. Again, this is a very exciting study, it only recently got underway. So we do think that there will be a lot of slots in the upcoming months for patients to go on the study. There are a number of sites that are active and continuing to be activated across the country. So looking to kind of where your closest site is, we’re always happy to see folks here at MD Anderson. But I’m very excited about the study. I think it’s very promising and I  I’m happy to answer any questions from anyone.

Manju George  17:57 
Yeah Dr. Lee, thank you very much. This was very informative. There are a couple of questions in the chat. So maybe we can go through that first. So this question is about prior BRAF and MAPK pathway treatments, are you okay, if people wait for a little bit? Or you said ideally, you don’t want any prior BRAF or —

Dr. Michael Lee  18:19 
Yeah, so it’s a great question. I think in general, patients try to determine what’s the best timing for coming into being evaluated for a clinical trial. It can be hard, because the reality is that logistically, there’s always a little bit of lead time that’s required to get in a new study, especially if you have to travel and figure out kind of life issues with that. And the reality is, if you’re kind of actively progressing, sometimes patients may have more significant symptoms that are building. What we don’t want is for a patient to wait, not get any active therapy before they know that they’ve been off of therapy for a couple of months and then start having worsening symptoms or other issues. I’d encourage patients in general, if you’re interested in the study, you know that you have a potential activating mutation in one of these key genes, to get an opinion at one of the sites that has the study. While you’re in the middle of your first line therapy, you may be able to get a kind of with a planned restaging scan. That way you can get plugged in well in advance, you talked about the study, you have an updated sense of the actual slot availability. Particularly in earlier phase, the earliest portion of the study, I will tell you we do have to be a little bit slow and methodical in how we enroll patients, just because we were looking very cautiously for safety of these new combinations. And so we don’t want to enroll a ton of patients all at once and find out there was a significant toxicity and we have to adjust the dose. So there are kind of slots that come and go particularly in the early phase of the study. So it is helpful to get plugged in and really get an updated sense of what are the study options — really other study options other than HERKULES 3. While this is a very promising study, there may be other study options that may be right for you. So rather than waiting until you’re progressing, and then risking a long wait time to try to get into the center, I think it’s good to try to get in kind of earlier, when you have a little bit more breathing room to figure out what the options are, so that when the time comes, you can get in quickly.

Manju George  20:21 
Yeah. Okay. So what you’re saying is that, so is it true that when a person starts, say, for example, FOLFOXIRI, and do they have to wait through like eight cycles or till progression to start thinking about this trial? Or should they initially  start thinking about it and get talking about it?

Dr. Michael Lee  20:42 
Well, I encourage patients in general to think about trial options, even from the beginning. So if  know you’re very motivated to go for trials, you understand. I mean, I always advise all my patients, there’s always kinds of downsides, particularly having to travel  farther than normal to get on a study –it is important to be aware of logistically what’s involved. With all that being said, if you know you’re interested in a trial, I think it always behooves you to get plugged in to a center with a large number of trials earlier in your course. When you’re getting standard FOLFOXIRI based therapy,  or even a chemotherapy doublet, if that’s whatever standard therapy you’re getting. If you’re having a really amazing response to therapy, I don’t think anyone would tell you to stop what’s working. And we would hope that that response would last for a long time. But of course, we also understand that at some point, that response may run its course, and we want to be prepared and have this plan ready to go at that time. Usually, that requires restaging every two to three months, we typically will do it every two months at our center to keep an eye on things. And so if you already know you’re interested in the study, many patients will actually get their restaging scans done with us, for example, so that we are immediately aware of when we need to switch gears.

Manju George  22:02 
Yeah. I had a question about the side effects of ERAS-007. You talked about the ocular side effects, what particularly are you seeing or what is known?

Speaker 1  22:13 
Well, these classes of side effects in general can be associated with a retinopathy, which is a retinal inflammation, or, specifically, if you recognize it, and you hold the drug, it does get better. And it may manifests in things like blurred vision or flashers or floaters. The study is building in regular eye exams, but you should also be aware, and kind of letting us know if you’re having any of those side effects. This is a class of side effects that generally we’ve seen with other kinds of MAP kinase inhibitors, even other nodes of that pathway. So for example, this is a common side effect we see with MEK inhibitors as well. So it’s not unexpected, but it is something we need to be aware of. And of course, when you’re giving drugs in new combinations, we have to be aware of that maybe a different side effect profile, again, kind of part of the reason in the early phases study, we proceed with due diligence and caution to make sure we’re maximizing patient safety.

Manju George  23:13 
Okay. So the other question was you mentioned a couple of doses, right for thyroid cancer and for the other cancers, 180 milligrams and 250. So what is the dosing? Are you also dose escalating during this initial part of the study?

Speaker 1  23:27 
The initial part of the study does have a dose escalation. Now the initial that’s kind of part of the slot, the slow and steady kind of slot determination, there is an ultimate dose expansion that’s planned. But we are planning a priori for the potential for needing to modulate the doses based on the toxicities we’re seeing –the unique novel combinations. So there will be ongoing tweaking of those doses.

Manju George  23:49 
Okay. And then about this ERK inhibitor, this is ERK1 and 2 inhibitor combined, right, blocking both? –And how does it compare to say the other ones available? Like ulixertinib or the BVD drug? –What is the difference?

Dr. Michael Lee  24:06 
So, I mean, every drug pharmacologically has different kinds of affinity for binding for the receptor and different kind of selectivity. Generally, the more selective the drug is for its intended target, and the less it hits off target, we would hope for better toxicity profiles, we do also see differences in the pharmacokinetics, which is kind of how long the drug persists. And that not only affects dosing, but the idea is that it can affect the optimal effectiveness level of the drug. This is a little bit subjective. But there are folks who will even say that this is more promising, I think you had seen in those preclinical studies that responses did tend to look better than then some of the predecessor ERK inhibitor –the prior ERK inhibitors. So we’re very hopeful that this will be even more effective than kind of prior drugs in the class.

Manju George  25:07 
Okay, I think there’s a question about what information do you have on palbociclib? In other cancers, what is the toxicity or efficacy, what have you seen?

Speaker 1  25:16 
Sure. So we have a pretty good handle on the expected side effects of palbociclib — at least kind of as a single drug. As I mentioned, it is approved with kind of estrogen directed hormonal therapies in combination in a range of estrogen receptor positive breast cancers. In that context we typically will see the biggest potential side effects with palbociclib typically is your blood counts. So it can cause low red blood cells or white blood cells or platelets. So that’s a known side effect we would have to follow, it actually doesn’t usually cause too bad of like febrile neutropenia, which is what we usually worry about with, say, chemotherapy and low blood counts. But that being said, we obviously do have to monitor and be very wary of potential infection and keep an eye on your counts. It can be other side effects like fatigue, like, rarely lung toxicity, or pneumonitis. Rarely, things like mouth sores. These are things we would obviously pay attention to. And obviously, their risk in combination will be more potentially there. Palbociclibn isn’t really given as a single agent, really, in any disease type, it hasn’t shown much activity, it tends to probably work best in combination, when there’s another targeted drug that’s already partially impairing cell cycle pathways, and then you further hit the cell cycle pathway. So tends to synergize better with other targeted drugs.

Manju George  26:37 
Yeah, I think there’s another question about the combination of the ERK inhibitor with KRAS-G12C inhibitors, do you know anything about it?

Speaker 1  26:49 
That would obviously be very exciting. There are a range of trials that are ongoing, obviously, specifically for the G12C patients. If you hypothetically had a KRAS-G12C  inhibitor, you could go on this study in the KRAS arm. With that being said, there are a wealth of studies that are specifically looking at direct KRAS-G12C inhibitors, as we’re all aware of. And it’s actually there’s an increasing number of compounds and an increasing number of combination approaches. And frankly, that would be a really good option. And something that’d be more unique to you if you had a KRAS-G12C mutation. So while you certainly could consider the study, and I would consider it, I would also look very hard into KRAS-G12C  inhibitor based combinations, because, there is a rationale to look at G12C plus other inhibitors of the EGFR MAP kinase pathway that is being studied in colorectal cancer. The exact best strategy remains to be seen, but most of the studies we have we’ve enrolled a number of patients on on other G12C  inhibitor trials, and they’re looking at an ever increasing number of potential new combinations to look to see, is there a signal of being more active while remaining tolerable compared to just single agent? So there’s a lot more options if you do have a G12C  mutation.

Manju George  28:13 
Yeah, and the other one question here is about EGFR inhibitors. So prior EGFR inhibitors don’t affect being on the trial at all right?

Speaker 1  28:24 
Well, if you have a KRAS, or NRAS mutation, you should not have gotten a prior EGFR antibody. So it would be a moot point. For the BRAF arm, it’s more relevant about if you’ve had prior BRAF in general, I wouldn’t expect you to be getting an EGFR antibody alone. But even if you hypothetically did, it will really depend on whether the trials at that phase of whether it’s enrolling patients with prior BRAF and or EGFR antibody therapy or not. But I would say if you have a BRAF mutation, even if you’re getting standard of care, it really should be in combination with another targeted agent, like the BRAF.

Manju George  29:07 
Okay. Okay. And then so the exclusion or  you prefer to have people who don’t have prior BRAF inhibitor exposure, right?

Speaker 1  29:20 
The study actually, the reason I phrase it that way is actually different phases of the study, it may allow or may specifically prohibit prior therapy. So generally, it will be safer if you haven’t had prior therapy, because at some point, the study will reach a phase where if you’ve had prior therapy it will actually probably be an exclusion criterion for this study.

Manju George  29:42 
Okay, so that means that for right now, prior BRAF inhibition is not an exclusion but it could be later. Yes, okay. Okay. And then we have one question from a patient she’s currently on FOLFOXIRI plus Avastin. And then she’s asked she’s got an HAI pump and to get to the liver resection and she’s asking, this would be the best time to think about this trial, right? For her?

Speaker 1  30:07 
I would think about it for sure, I think the biggest question for you specifically is going to be do you in fact, get to the point of a liver resection happening. Because if you have, what it would mean is that your liver metastases have responded very well, and that you’re actually having your shot at surgery. So, if you actually do have surgery and have all visible, known tumors removed with no evidence of radiographic disease remaining, then frankly, wouldn’t really be a candidate for this study. But that’d be great. So I would think about it just in case it doesn’t happen. But obviously, the hope would be that you would get to resection.

Manju George  30:46 
Okay. How can a BRAF V600 patient decide between Beacon doublet and this trial and which is more likely to help?

Dr. Michael Lee  30:57 
Well, Beacon is your standard of care doublet, right? That’s always available to you, as a standard of care with your local oncologist. I think but knowing what we know, about expected response rate, progression free survival and wanting to continue to push things forward, improve outcomes, I do think there’s an important role for novel therapies, looking at trying to see if the addition of the ERK inhibitor will build on the Beacon kind of backbone. So, ultimately, I think, if you’re willing to go on a trial and kind of have the logistical bandwidth to go on a study, I would highly encourage you to at least look into it. I think if for other reasons lifestyle, quality of life, it just doesn’t make sense, that’s totally understandable. And the Beacon regimen is going to be totally reasonable to get as your standard of care and is obviously the best standard care approach you could take.

Manju George  32:05 
The next question is about washouts. So if somebody is on chemo, how long do they have to wait till they get on the trial?

Speaker 1  32:13 
I believe it’s three weeks,  let me confirm it. It would. It would be in the clinical trials. I believe it’s three weeks though.

Manju George  32:24 
Okay. So not too much of a wait time. Yes. Yeah. Okay. Any other questions? When you showed the figure with the mouse models, you had some wild type animals in there, too. Right?

Dr. Michael Lee  32:43 
In the mouse models, there were wild type as well. Yes.

Manju George  32:47 
So it’s responding to people who don’t have the cancers which don’t have mutations in the BRAF and KRAF too?

Speaker 1  32:58 
So at least from the mouse data, it did look like that was the case now. Certainly, that the potential future area of investigation, because we obviously know that all patients with a range of kind of mutation profiles, we want to push things forward and have new trial options. So, but I think the study was designed with this priority for now, because we know there’s a particular need for patients with these mutations. I think I saw a question about what is the known toxicity profile. The study has started enrolling, but it’s actually quite early in its course, there haven’t been any major unexpected toxicity so far. But this is with a very small handful of patients. And certainly hasn’t been, like, reported at a meeting or anything, just because it’s still so small. I can assure you there are very regular safety calls ongoing to make sure all investigators in the study are staying abreast of any updated safety kind of in real time, which we do standardly for any new combination of drugs, and that’s certainly happening with this as well.

Steve Schwarze  34:01 
Manju, can I jump in? Sorry. Yeah, just I mean, obviously, we know something or like we have some data about CDK 4/6 for KRAS patients. Do we have any sort of evidence about what that would do for BRAF patients?

Speaker 1  34:25 
The CDK 4/6? Yeah. It’s a great question. We are increasingly looking, we’ve been looking at CDK 4/6 in a range of mouse models, actually. And while there certainly is kind of some promising preclinical data, I think. It certainly would be another realm of investigation for us to want to look into. There are a lot of really promising BRAF trials right now actually, that are trying to build on Beacon so really the question has been a matter of what is the most promising way to go? So CDK 4/6, certainly there’s a lot of interest in it. I will tell you at our center, my colleague, Van Morris, who I’m sure you all are very familiar with, has probably talked to you about some other emerging data about kind of the Beacon regimen plus immune checkpoint inhibitor therapy, and that he’ll actually be discussing those outcomes at the upcoming GI ASCO meeting. With the early data, and, there’s ongoing discussions about that becoming a larger, kind of much larger study. So I think we’re very excited about that data, in particular for BRAF patients.

Manju George  35:44 
Okay. Again, going back to the mouse data, so you had the HCT 119 cell lines right? In that figure, so is that like a subcutaneous model? Or do you have you checked in like a PDX model or something?

Speaker 1  35:59 
So it’s looked both kind of traditional cell line models, right. But on the right side of that figure was actually a range of colorectal PDX , is specifically patient derived xenografts. So it was looking both at kind of traditional cell line models plus PDXs.

Manju George  36:18 
What else? This is very useful. Thank you so much for your time. And we’ll probably give like one or two minutes, if anybody has any other questions.

Speaker 1  36:29 
I think someone had asked about efficacy even in the last few months. I wish I could tell you something more concrete. But right now, it’s still extremely early in the course of the study. We’re still even kind of at a point of getting dosing or firming up the dosing and the tolerability. So it’s very hard to say right now anything broadly with just a handful of patients.

Steve Schwarze  36:58 
Can I ask one, Manju? That dosing question is really important. I mean, so I was on a Beacon doublet, on the trial arm,  like four years ago, and then over the past year, I did it again with ulixertinib, through their expanded access program, and like I ended up getting eight months, I got twice as long on this combo with ERK inhibitor –I got four months on the trial, even though I’m much farther out. But it was a real challenge to try to juggle those doses, because we really didn’t know how much and I had a lot of toxicities related to it. So, yeah, I don’t really have a question. It’s just more of an n of 1 example, that it was figuring out what those right dosage was gonna be.

Speaker 1  37:52 
And I think that’s really important, because it’s exactly what we’re getting at. And I will say that targeted therapies, some patients think, oh, targeted therapies are not going to have any side effects like cytotoxic chemotherapy. And that’s, of course, not the case. It’s a different side effect profile, right? It’s more not like the really bad toxicity that gets better. It’s more like we have to learn how to live with these toxicities over a long time. So like a moderate toxicity that just never goes away, is quite bothersome as well, and perhaps arguably more so than a more significant toxicity that goes away in a couple of days. Right? And so part of the study is looking very carefully at what is the best dosing schedule along with dosing there are. That’s all kind of being pre specified, and still active discussion, and that’s kind of a key point of the early phase of the study. So we know what is the best strategy to go to before we kind of go into a larger expansion phase where the slots aren’t going to be so limited, we will have a better handle so that other clinicians, the investigators on the study, have a better sense instead of feeling like they’re having to go it alone to figure out the dosing, right?  which may have been your n of 1 experience.

Manju George  39:05 
Yeah, I think there’s a question. He’s asking, do you have a sense of how quickly you expect to see results or not? So are you going to have like interim results when you have the safety part done before you go into a dose expansion?

Speaker 1  39:21 
Yes, and no, I mean, so, of course there will be ongoing evaluation of the results, but it’s always very tricky when you have only like a handful of patients to make a firm conclusion about the efficacy of the study. Even the Beacon regimen, which as we all recognize was a major advance, had a response rate of about 20%. So hypothetically, I mean, I know actually, the earlier patients actually had a really high response rate, but hypothetically, if you’d had a treatment that had a one in five response rate and your first five patients you didn’t happen to see anyone have a response, you might prematurely say, “Oh, that’s not active” — and that wouldn’t really be accurate. So you do have to be really careful about that. We obviously do want to get the results as quickly as you can, but we also need to recognize that we need to get a large enough sample to know really what the true efficacy is.

Manju George  40:20 
Yeah. Okay. I have a question. So, in Dr. Corcoran’s trial, where he had the Spartalizumab with the MEK inhibitor and the BRAF inhibitor, he was using CtDNA to see whether the BRAF levels go down, and that would be an early indicator of effficacy, right? Are you planning to do something like that? What exploratory endpoints are you looking at?

Speaker 1  40:42 
Sure I mean, there are a range of –any early phase study has a lot of endpoints like, additional correlative studies, a lot of them are pharmacokinetic studies where they’re really looking to see what is the dosing level obtained by the drug and like, what is the level of the drug in your body at that time point that standard. It’s pretty cumbersome, honestly, for the patient to have, but that standard. CtDNA is built into practically every study at this point, I will tell you, it’s probably not like an immediate readout or necessarily going to be used to determine if it’s working or not–continue or stop. From that perspective, we’ll still be using the tried and true kind of radiographic imaging based endpoints. But, pharmacodynamics, and pharmacokinetics are a key point of what happens in these early studies. We’re very grateful that patients are so willing to take those steps, we can truly know was the drug working, was it doing what we intended it to do, because we really need patients to be willing to get extra blood draws or even biopsies and things as needed. So we’re very thankful for patients to be willing to do that.

Manju George  42:03 
Okay, thank you for that. Yeah, I think we covered all the questions. And this has been very useful. So what I’ll do is that I’ll have the video available in Colontown University as well as Colontown. And if you want, if you’re interested in having your patients watch it, or somebody who’s interested in the trial watching it, I’ll be happy to share a link so that you can have them watch it.

Dr. Michael Lee  42:31 
Yeah, that would be great. Thank you so much.

Manju George  42:34 
Yeah. Okay. Thank you very much for your time.

Dr. Michael Lee  42:37 
Thank you, everyone.

Steve Schwarze  42:38 
Thank you. Bye bye.

DocTalk
2021
Dr. Lee
BRAF
KRAS
MSS
Stage IV
Trials

Dr. Michael Lee of MD Anderson discusses the HERKULES-3 clinical trial for BRAF and RAS-mutated GI cancers. Recorded in December, 2021.

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Tackling targeted therapy refractory BRAF V600E mCRC

Tackling targeted therapy refractory BRAF V600E mCRC

DocTalk
2021
Dr. Kopetz
BRAF

Dr. Kopetz of MD Anderson discusses options for therapy refractory BRAF V600E metastatic colorectal cancer in this Doc Talk, recorded for COLONTOWN in August, 2021.

This is an automatically generated transcript.

Dr. Scott Kopetz 0:00
So thank you all for coming together and spending a little bit of time to talk about how we’re tackling targeted therapy refractory to BRAF, decent center D, metastatic colorectal cancer. I am Scott Kopetz faculty at MD Anderson. I had a few slides just to kind of set the stage and where we are. And then we’ll dive into some discussion on, on, some of the efforts ongoing, just to set the stage a bit, I think this group knows well that BRAF has been a bit of an enigma for colorectal cancer, in the sense that that treatments that have worked well in melanoma did not work well in in colorectal cancer, even though the same drug, same mutation, and so this really kind of sets the stage for a lot of how we are thinking about a kind of a treatment refractory colorectal cancer. What are the key findings? And I have just a few science slides here to show but some of the key findings is that really we have in colorectal cancer, we had a hard time really fully inhibiting that pathway. So when we give a drug, what we can see is that in melanoma, you get really nice inhibition of the pathway. And so what we can see in western blots is where there’s a dark, dark line that’s an expression of a protein. And so this is signaling through this key pathway that we’ll come back to in melanoma, really single dose of the drug, and you get this complete inhibition, you know, whiteness here on this area, but in colorectal cancer, on the top, what’s seen is that you get very transient inhibition, and then the signaling starts to restore. And so this is kind of the science that’s the fundamental behind the issue in colorectal cancer, which is one of kind of adaptive resistance. And so adaptive resistance is, I describe this as really kind of the homeostatic regulation. So networks have a way of wanting to go back to where they were. And so, you know, when you have a really complex system, think about, you know, a the power grid, right? Someone can, can drive into a power pole, knock it down, the lights blink, and the power is back. You know, before you’ve had, you know, a chance to even acknowledge that the lights were temporarily out because the network has a lot of redundancies and other pathways, and is the networks restored. And so the same thing happens in biologic systems. And so cancer has a set point, like a thermostat of where it wants these, these pathways to be, and when you try to perturb it, what the system does is it is it adapts and rewires to try to restore that signal. And so what we’ll be talking about is really this concept of adaptive resistance, homeostatic regulation. So what does that look like? Well, it means that this is our signaling cascade, where we have growth factors that come in, and these are a series of cascading proteins that signal one into the other. And they do these in a way to try to coalesce a number of different signals. So we have this as a very linear process here, but there are multiple growth factor receptors. We’ll come back to that, that all kind of feed down into this growth signaling pathway here. And there’s also amplification steps that occur. So each step down, the signal gets amplified, other inputs get interrogated. So the end results is, you have ERK, which is the factor that really goes in the nucleus and that starts to change the program of the cell. So what happens is, when you give up the BRAF, the here, green is activation, blue is is, is quiet or inactivation. We give a BRAF inhibitor. You get a transient inhibition downstream signaling. What happens is you see all these arrows going up. These are some of the adaptive feedback mechanisms. And what happens is this, these negative regulators then get inhibited as well. So you’re inhibiting a negative regulator. What happens now is then you get upstream activation. And so this is where we see EGFR now, all of a sudden become important. Signaling drives this, and it drives through KRAS and then BRAF is a family of RAF. There’s ARAF BRAF CRAF, right. And within our cell, we’ve got one mutated copy of BRAF and a colorectal tumor. But then there’s a wild type BRAF that’s there as well, right? So they have two copies of everything that get passed along in most cancers. And so what happens is that it can use the existing normal signal signaling, kind of signal around the BRAF, and then restore the pathway homeostatic response. And this is how the tumor so the key finding was that when you inhibit EGFR as one of the kind of key feedback mechanisms, now you block BRAF, you block what pops up, and then your signaling can be inhibited. And so that’s the was the rationale between a lot of studies and just highlighting the one that led to FDA approval, the BEACON study, of course, where we’re looking at the doublet of a BRAF and an EGFR inhibitor versus control. And that was what ultimately the FDA approved as a current standard of care. Now there was another arm, bimimetinib, and that was the MEK inhibitor. And so the idea here was, well, maybe we just need to hit a little bit further downstream with the MEK inhibitor, and that’s going to even any leakage that we had, maybe that’s going to blunt it even further, right? And so that was the hope. Now we know, unfortunately, that this hypothesis didn’t pan out, and that when we looked at the overall survival, we saw clear improvements with the BRAF and EGFR, but the MEK turned out didn’t do anything, right and and you know, part of that is, you know, the balance of toxicities and efficacy, and that’s despite the fact that what we see is, we saw higher response rate, and I won’t show you the data, but you know, we saw that the tumor shrink down more. They just didn’t stay down quite as long, or they stayed down just as long, I should say, is the BRAF and EGFR alone, so that added toxicity didn’t really provide any benefit for patients long term. So, you know, this is where the field has been. And really kind of thinking about, how do we inhibit this, and how do we improve upon it? And what I want to highlight, because this is certainly an area of interest to this group, is how do we really understand signaling at progression and clinical approaches to modulate resistance, and so that really kind of sets the stage. Now we’ve known for many years, and this is now almost worked far as maybe 10 years ago, that at the time of resistance to some of these inhibitors, you get number of different things that can occur, EGFR amplification, KRAS amplification here, and there’s a number of these different things that have been seen circulating tumor DNA has provided a lot of insights into terms of KRAS and NRAS mutations that also appear. One of the key features that we see is that all of these are converging onto what we call a MAP kinase pathway reactivation. So this is intriguing, because in other settings and other tumor types, you may have resistance that develops to a treatment, but it may be four or five very different pathways that may get turned back on right. maybe this pathway over here got turned on in one patient, a different pathway in another patient. But what we can tell, and I think we’ve now seen enough to say that this is probably the vast majority of patients. Then the tumor starts to progress on treatment. It’s still very dependent on this exact same pathway, the matpatus pathway. So even though there is a whole smattering of different mechanisms, they all appear to be going down to the exact same pathway. So it is useful sometimes to understand why patients are progressing on a given therapy. But that doesn’t preclude the fact, even if we don’t know that, we just know by all the studies that we’ve done what the tumor is still dependent on. So in we borrow a lot of evolutionary terms in cancer biology, so we call this convergent evolution, right? And so this is the classic like we learn in biology, that the sharks and the dinosaurs, the reptiles, penguins,dolphins, mammals, looked very different a long time ago, but they all evolved to have a very similar shape, because that was the most efficient when you’re swimming through the water, right? So this idea of kind of multiple different mechanisms to get to the same, the same behavior pattern. So that sets the stage for a number of different strategies. And there are studies looking at Other MAP kinase pathways. There’s a few different ERK studies, so Lilly studies, Asana ERK inhibitors, for example. And then kind of a big study that Novartis is doing, looking at a number of different combinations here. This is a word salad here. I’ll put the PD-1 kind of at the end, and we’ll kind of come back to that one in a minute, because that’s a bit of an outlier in the concepts that we’re discussing in these other items. But the idea here is, how do we learn from these and how do we try to explore what’s going to be best tolerated and give us that best therapeutic window? So we go back to our now slightly tweaked pattern here. This study is actually looking at BRAF, the bratinib, and an erk inhibitor. And so you can see that it’s under my yellow X here. But this is the ltt 462, inhibitor, erk inhibitor, that’s being utilized. And the idea is that we really want to try to block these downstream signaling, but erk inhibitor alone can’t fully shut off signaling, and that that there’s if there’s a lot of signaling from above, there’s still going to be leakage through. So it’s really about, how do you try to tamp down that upstream signaling? And so the three areas that are being looked at are, well, mek, so let’s just BRAF, mek, try to really go downstream. Find best doses for those instead of MEK, there’s others looking at pan RAF. So that’s the LX 254, Pan RAF inhibitor. Remember I said RAF is a family, so it’s kind of ARAF BRAF CRAF so you’re trying to kind of block that bypass where everything upstream is sneaking around, BRAF to get through. So that’s shutting off another leak in the dike, as it were, and then the other is looking at shp2. Now, shp2 is a is kind of an adapter. You also may hear a sauce inhibitors and their sauce MEK combinations being explored, but, but recognizing that there are a number of different rtks, fgfr, EGFR, pdgfr, all these have been implicated at various times or others. And while we think EGFR is a dominant one, certainly we see other ones appearing there for family members as well, and they all feed through shp2 to then activate KRAS. So this is kind of the funnel, you know, it’s a area, and the funnel that, if we hit inhibit shp2 , in essence, where it’s like inhibiting a lot of the receptor tyrosine kinases and so, which is good, but it also can come up with some toxicities, because you’re inhibiting, you know, EGFR and lots of other, you know, her family members and so. So trying to, you know, find these right combinations, our goal then as well. So these are kind of some of the combinations that are being explored in these studies. And this is just showing, you know, the study and how that’s being explored within the water study in particular. But let’s go back to erk inhibitor for just a minute. And again, we’re inhibiting this downstream. And there was some early work, maybe five years ago now, kind of showing in a number in this red box, yellow means more inhibition. That when you give a HERK inhibitor, especially in combination with some of these, that you can improve activity, and that this is another preclinical work now showing that a lot of the doublets here, even the triplets, BRAF mek, EGFR, don’t see a lot of regression in some of these models, but it’s only with the addition of erk top of some of these BRAF targeted strategies that make sense. So you know, there are studies launching looking at BRAF, EGFR, erk, for example, to explore that. And one of the things is that, and this was some really nice work where they looked at Mark good, and this is out of Ryan Corcoran’s Group. So this is a slide from him, where they actually looked at a number of different combinations. And then when they did the combination with the ERK inhibitor, what they could do is prevent outgrowth of some of these clones, right? So the kind of KRAS clones that were present that could prevent those from growing out. So that was, you know, some of the rationale for exploring that. And so I think, you know, just acknowledging, of course, what we know that we need novel therapies. Here we have encorafenib cetuximab. And there’s a lot of work going on about, how do you move into first line or into adjuvant setting? And then some of these, you know, combinations there as well. One final comment about PD-1. So there’s a about 20% of patients with a BRAF metastatic BRAF tumor will also have an MSI high, and that responds well to immunotherapy, but there’s a proportion of patients that progress immediately in immunotherapy and don’t respond. And so there’s a question about, well, what if you target the BRAF, EGFR, and the PD-1, for example, is that something that could be beneficial. And this parallels a whole other area of work that we and others are working on, thinking about PD-1 in a microsatellite stable population. And so there’s NCTN, a large US cooperative group study that’s launching looking at a BEACON regimen and corrective Cetuximab with or without a PD -1 inhibitor for MSS patients. But the Novartis study, for example, is really looking at, can you improve upon outcomes in the MSI high population as well. So there’s a lot of kind of really interesting biology there. So with that, I’ll, I’ll stop and and, you know, take any questions and really make sure I have some time for some discussion around this really interesting area.

Manju George 16:37
Thank you so much for that introduction. So we have got nine questions, and I’ll go through them quickly. The first one was about about the trial design itself. The question was, can the same patient be on two different arms of the trial at two different times, since this is a safety trial,

Dr. Scott Kopetz 16:55
Yep, yeah, there is a safety and then an expansion cohorts in there as well. There’s nothing in the in the trial that prohibits that there are two different cohorts for groups of patients that have not had encorafinib cetuximab before or not any MAP kinase targeted therapies before, and those that have. And so there’s a possibility to go on those that have not had it get treated with it and then potentially re-enroll in the converse. There’s not anything that is in the current version of the protocol that is precluding that, so we’ll certainly be exploring it. The only thing is that if, if a patient has to stop therapy because of toxicities. For example, the you know, ERK caused some toxicities for which one had to stop, then you wouldn’t be able, or wouldn’t, probably want to either kind of go back out of the same regimen. So there is a caveat here.

Manju George 17:55
If a patient has been on the on dabrafinib previously, could they get that on this trial immediately, or is prior dabrafinib an exclusion? If not, do you need to have, okay, okay, so do you need to have an intervening chemo period? Or can they come back?

Dr. Scott Kopetz 18:12
Nope, they can come right in. You know, there’s a requirement that patients have had at least one prior line of chemo therapy. So, yeah, it shouldn’t, shouldn’t be a problem.

Manju George 18:24
Okay, so if they’re on the other like, for example, the -?–emab you know, Dr Corcoran’s trial with the dabrofinib, and they could still come back on the Novartis without any any problems. Okay, okay, good to know. Thank you.

Manju George 18:41
yeah, in between the different trial arms, could you tell us, like, if a patient had to choose, are there particular arms that would be better, and why would you think so?

Dr. Scott Kopetz 18:51
Yeah, that’s a good question. And so, you know, part of it is that with these studies, the way that they tend to work, even a trial that has lots of arms like this, you know, right now, like, if I, you know, somebody that I wanted to put on study this week, there really wouldn’t be any arms available, right? So there’s, you know, the the I think the further we get into the study, the more opportunities and slots, you know, may be available. So it may get to a point where there is a bit of, you know, opportunity to kind of pick and choose, you know, efficacy we just don’t know. And I think the question for all of these is really one of a therapeutic window, meaning how much to inhibit the pathway and really maintain kind of safety. So a lot of work trying to get those doses just right, figure out kind of where things are going to settle down with those treatments. So I think all of them are, you know, based on really good science and good rationale. And I think it’s really going to be a factor of, you know, what doses are achievable and and how effective are we at inhibiting the pathway, and that, unfortunately, just going to come with. Time. So the short answer is, the best arm is the one that you can kind of get on when you need it, you know, I think they’re all very, very reasonable.

Manju George 20:12
Okay, okay, so I’ll just ask one question. So in your talk, you thought that, like with the data, that you showed the BRAF inhibition, the MEK inhibition, and the ERK inhibition, or, you know, this, like that, seems to be having the most, you know, the bars are going down, right? There are some of the arms they’re just taking SHP2. They’re not blocking all the three nodes in a sequence, right?

Dr. Scott Kopetz 20:37
And so acknowledging, of course, that they, you know that one study didn’t, didn’t run, that was in cell culture, right? So there’s some caveats there. And we didn’t really explore all of those different, you know, all of those different combinations, or actually, they didn’t explore all those different combinations. So I, you know, I would be a little hesitant to say that’s absolutely the winner? I think there’s, you know, there’s a lot of thoughts about, well, how do you bring this forward, like, what does the next study look like based on these results? So I’m hopeful that that combination, you know, may be explored, and that’s being explored in other studies, but, but I think trying to think about where one can go with, you know, with a signal like, what is it? What do we need to see in order to move this forward for patients?

Manju George 21:31
Okay, so the next question is, like, we have a patient who has a co occurring, Akt1 e17k mutation. So do you think that particular arm would be better, like with that particular mutation?

Dr. Scott Kopetz 21:43
Yeah, it’s a good question. We don’t have a – it’s a rare mutation, but certainly is activating of that pathway. We can learn from the PIK3CA mutations that have been seen, which is which is slightly upstream of the Akt signal. So the Akt, when it’s activated, PIK3CA, will activate AKT. And when the PIK3CA, when we looked at it, we went into this several years ago, thinking, well, if you had that mutation, conceptually, it seems like maybe the treatments wouldn’t be beneficial. When we looked at some of the earlier data, it actually looked like that for reasons we didn’t understand. The outcomes were even slightly better with the patients who had a PIK3CA, even though you were targeting the MAP kinase pathway and some of the randomized studies that didn’t pan out. So we look at, so I don’t know about the Akt inhibitor alone, but the PIK3CA activating mutations did not appear to be a major, major driver. So, you know, we think about that maybe that mutation was critical early in the development of the cancer, and that as the cancer evolved, it became less of a dominant driver. And it really all became about map kinase pathway,

Manju George 23:07
The next one like I think we have to go quickly so monomer versus dimer, ras inhibitors, and what you know, there is an arm combining both of them along with their inhibitor. If you want to say something about that?

Dr. Scott Kopetz 23:24
So, you know, the idea, obviously, BRAF, we know it targets the oncogene and the wild type BRAF, but you know, the hope for the pan RAFs is that it can help modulate, you know, the other signaling around, kind of the leakage, as we talked about, around that. So, so, you know, that’s, I think, you know, hopeful that some of these pan RAF inhibitors will be more, you know, more effective in this thing. But it still remains to be seen. Again, it comes back to tolerability, right? You know, BRAF’s great because you hit BRAF. And you know your normal skin is okay, you knock out BRAF, but your normal skin has CRAF right? So it can still do what it needs to do with CRAF. So the problem, of course, is if you’re blocking all of RAF, you’re blocking all the raf in the tumor, but you’re blocking all RAF in your skin as well, right? And so or your GI tract, or other areas. So that’s where really trying to make sure that there’s a therapeutic window. So it’s not always what looks great on this simplified signaling diagram, but what is happening in the normal tissues as well.

Manju George 24:29
And safety and toxicity of SHP2 inhibitors. So there’s some data with the KRAS mutant study. So I mean, do you have any advice on what are you seeing?

Dr. Scott Kopetz 24:38
Yeah. I mean, I think shift two is an incredibly interesting class, and I think we’re really kind of excited about the potential there. You know, receptor tyrosine kinases are very ubiquitous throughout the skin, the GI tract as well, and so we need some signaling in our healthy tissue to kind of. Through that. And so again, comes back to the same thing that, you know, it looks great targeting the cancer cells, but it’s, you know, how tolerable is that going to be? And how do we adjust things to look at that we know, for example, EGFR and MEK inhibitors, and we put those together, they’re really difficult to tolerate those two together. Now, turns out, when you look at other different combinations, then it may be a little better, you know, ERK and EGFR may be better. You know, BRAF, MEK, EGFR is much improved because of some of the feedback mechanisms in the skin, for example, so that we know that some of the SHP2 combinations, we may run into some of those same limiting toxicity. So still a little early, but I think very promising.

Manju George 25:53
This was about TKI inhibitors combining with like the BEACON doublet.

Dr. Scott Kopetz 26:00
Yeah. So, yeah. So good question there is, you know, one of the things that Stivarga does is it does have, it’s a multi kinase inhibitor, meaning that predominantly hits a VEGF, so it’s mostly an angiogenic effect. But they also do hit some other pathways, PDGFR right, which is one of those other receptor tyrosine kinases that, in rare cases, can be kind of a dominant feedback. So the concept is certainly, you know, intriguing to think about, you know, regoragenib combined with it. I think that may work in the kind of unique case that PDGFR is the dominant one in a given tumor or patient. But I think the concern is that we see so many other different ways that the tumor evolves and adapts. That concern that it may not be quite as ubiquitous of a solution, although I certainly can acknowledge in a few select patients, it may be.

Manju George 27:04
Letinatinib (?) is also kind of similar in range of targeting multiple…

Dr. Scott Kopetz 27:10
It has maybe a little bit more selectivity than regorafenib, but still very much hits a lot of other things that may actually be driving whatever efficacy we’re seeing outside of that job.

Manju George 27:22
Question about drug availability and addition of slots, for example, in Europe, or –

Dr. Scott Kopetz 27:26
Yeah, so certainly, the largest studies enrolling in Europe, the slot availability is managed worldwide. For this study, like most studies, meaning if there’s no slot in the US, there’s no slot in Europe, there’s not separate slots for for separate separate sites.

Manju George 27:48
We’ve had some off label experiments going on where people have tried, like the BEACON plus ERK inhibitor.

Dr. Scott Kopetz 27:55
Great to hear. And I think, you know, trying that’s the direction I think we need to go as a field to really better understand it.

Manju George 28:04
So when do you expect to report out some of the findings?

Dr. Scott Kopetz 28:07
You know, a lot of these studies are early on, including, you know, Novartis study, a lot of times they’ll want to have the expansion cohorts enrolled before to really understand a little bit better about the safety. So, so it won’t be ASCO gi I think the question will be ASCO, or would it slip into the Fall even?

Manju George 28:33
What about Dr van Morris’s study like the BEACON plus nivolumab? When can we expect some results?

Dr. Scott Kopetz 28:40
Yeah, going very well there. We’ll have some coming out at GI ASCO. I anticipate, again, the results are sufficiently promising that, you know, the follow on randomized study is, is launching, yeah, so the nivolumab for MSS patients, in addition to the Enocrafenib.

Manju George 29:07
So I think the other question is, are you going to add more arms to the Novartis man? Are you expecting more to be added?

Dr. Scott Kopetz 29:12
Yeah, it’s designed for that. So we very well may see some additional arms come in. There’s a lot of arms already, but there’s, it’s designed that new things can come in there, and then the arms will pause at various times when there are efficacy barriers. So, you know, we don’t see a certain amount of activity. An arm may pause enrollment and prioritize other arms as well.

DocTalk
2021
Dr. Kopetz
BRAF

Dr. Kopetz of MD Anderson discusses options for therapy refractory BRAF V600E metastatic colorectal cancer in this Doc Talk, recorded for COLONTOWN in August, 2021.

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BRAF V600E research update

BRAF V600E research update

DocTalk
2020
Dr. Corcoran
BRAF

Dr. Ryan Corcoran of Massachusetts General Hospital provides a look at current options and research for BRAF V600E colorectal cancer in this COLONTOWN Doc Talk, recorded in August 2020.

Dr. Morris 00:00
Yeah, thank you guys for inviting me in, as you refer to, we really appreciate just the support of COLONTOWN in general. This goes beyond just kind of, as you mentioned, your support for the COBRA trial, and in the BRAF trials as well, which you guys are obviously incredible in mobilizing patients, through social media, but I will say more experientially as well, you know, this group means a lot to my patients. And it’s common for me to have that patient come to MD Anderson, who’s newly diagnosed with colon cancer and is very understandably afraid and, to hear kind of their testimonies with how helpful COLONTOWN has been, and helping them and other patient advocacy groups who have been in helping them to understand kind of what’s going on with the shock of this news in their lives. So we just want to say we as oncologists appreciate your commitment to helping patients in this effort we’re all fighting against. I will say, you know, I realized that Dr. Corcoran had presented I think, a week or so ago. So some of this may overlap, I’ll try to kind of interject my own opinions about this, but there will be some overlap. There may be some slides that we haven’t published yet. But I did want to share these just share our data. So when I hit the slides, I want to share that kind of why we think what we think, but also just maybe ask for those particular slides, just kind of keeping those confidential, because we haven’t really published this data yet. I’m gonna be talking about kind of combining targeted therapies with immunotherapy. And maybe not using a one-size-fits-all approach for the management of BRAF-mutated metastatic colorectal cancer.

So I always just feel that it’s important to start out with, a patient presentation just to kind of put into context what we’re up against here, and this was a patient that I met during my first year on faculty at MD Anderson. She was a 35-year-old lady from the valley in southern Texas who presented to the ER, with abdominal pain, no past medical history at all. She had a 13-year-old son, a single mother. When she presented with abdominal pain her surgeons locally felt that she had issues with their gallbladder and took her to surgery to remove the gallbladder and were surprised, instead, to find a large transverse colon mass with diffuse metastatic disease in the peritoneum that was responsible for the abdominal pain. The pathology ultimately showed a microsatellite-stable BRAF-mutated CRC tumor. She then came to MD Anderson, where, by the time she arrived at MD Anderson, she already had evolved a large bowel obstruction from her tumor. So this was in 2016, we started her on treatment with FOLFOXFIRI. And she had some initial clinical improvement, but unfortunately, within three months of what is really throwing the kitchen sink at this tumor, in terms of cytotoxic chemotherapy, she was already developing signs of clinical and radiographic progression. Within four months of her initial presentation, the single mother was transferred to hospice and it was horrific to watch this unfold as a new oncologist at that point in time, and I think it just really speaks to the challenge we face with BRAF-mutated colorectal cancer, we recognize that this is a unique population with regards to clinical outcomes. As I’ve alluded to, the responses to chemotherapy aren’t great as we’re used to seeing our BRAF wild-type patients, we recognize the unique pathology here just in terms of where these tumors commonly arise from and how they look under the microscope. And with the genome as well we’ll talk about later the high tumor burden may extend beyond the association with MSI high into the MSS setting as well. But also it’s unique with regard to the epigenome and we recognize these to be hypermethylated tumors. I think that this still represents an untapped biology, that is potentially targetable with regards to this particular subpopulation of colorectal cancer, and possibly, with respect to the transcriptome as well, and we’ll talk kind of about CMS correlations a little bit later, too. So we’re seeing a unique but challenging, but potentially intervenable, clinical presentation. And I’ll kind of go through these slides quickly, because we all recognize that the BRAF mutations, even though it’s typically called an uncommon subpopulation of CRC, when you still consider it’s 5 to 10% of all the patients who have CRC and colorectal cancer represents one of the top causes for cancer mortality in the United States. By absolute numbers, it’s still a large fraction of patients who are faced with the challenge of BRAF-mutated, metastatic CRC. And unfortunately, as we all know here the successes of targeted therapies in terms of response rates that other cancer types see with the same exact BRAF mutation, we just don’t see those in data that Dr. Kopetz and then Dr. Corcoran had shown with BRAF monotherapy and BRAF MEK combination therapy, it just we don’t see either the response rates or the survival outcomes, that we’re accustomed to seeing in the context of other solid tumors as well. So this, oftentimes, when I hear people say that we should be treating tumors agnostically to the primary and according to the molecular subtype, I always just cringe when I hear that, because I think that again, that’s a one-size-fits-all approach. And I think that the BRAF V600E story for colorectal cancer is a very good example of why we can’t practice under such an umbrella. This is just kind of data that, again, we’re all familiar with, from eight years ago now, just kind of showing why in the context of CRC, blocking the BRAF V600E oncoprotein with agents that work in other contexts doesn’t work as well, to kind of have this upregulation of MAP kinase signaling, you get kind of this constitutive activation of… I think I say this to say it again, I don’t… correct me if I’m wrong here, but I think I can probably go pretty quickly through the next couple of slides. I think this group fully understands the recent clinical trials, which have led to clinical outcomes, or new clinical options for these patients; but it was really exciting, I think, to be involved early on with Dr. Kopetz as a fellow even, and working on the SWOG protocol, and seeing this translate from an idea in the data that was coming out of the lab, to showing some benefit in patients.

We looked at a model too that is a different model that was initially had disease control with Vemurafenib and Cetuximab. And we saw similar results in PDX, as we were seeing acquisition of acquired KRAS mutations. This is something that in the Vemurafenib study, when they went to the baseline samples of these patients and looked in their plasma, droplet digital PCR sequencing showed the presence of very, very low allelic frequency of KRAS mutants, you can see 0.21%, 0.31% that were present at baseline that are oftentimes below the limit of detection of assays that were available at that time. When we looked at patients who were treated on a phase one trial at MD Anderson with Vemurafenib, Cetuximab and Irinotecan, we saw that in the black here, you see the relative allelic frequency of the BRAF V600e gene in ctDNA. But again, we were finding in patients the same thing that we had seen in the PDX models, that there were these acquired oncogenes showing up in the resistant setting that had not been present in the pretreatment specimens. So our question then, at that time, and this is the data that we took to Array when Kopetz was pitching the BEACON approach, was: can the addition of the MEK inhibitor overcome the resistance to BRAF, EGFR targeted therapies. I also think with the SHP and SOS inhibitors, which are coming out as well, this also kind of represents something we’re thinking about moving forward as well. And again, what we saw on our PDX was, again, when these tumors grew resistant to the Vemurafenib and Cetuximab, if we added a MEK inhibitor, we could see sensitivity; and I think that Corcoran and his group beat us to the punch in publishing this data, but we certainly felt that what we’re seeing in the lab were being validated by his group as well. And so again, it made a lot of sense to us. So, as we all know, these thoughts led to the creation of the BEACON study. This is kind of flipped here, but the overall response rate of 26% with the triplet, and the 20%, with the doublet, beat that of Irinotecan and Cetuximab. And as you guys are all aware, the addition of the MEK inhibitor didn’t add any overall survival difference between BRAF EGFR and, very excitingly, (oh, this should actually be changed)… Encorafenib, Cetuximab, in February or April 2020, became FDA approved. So this was obviously super exciting for us, and for our patients as well. So one of the questions that comes up with our patients when we talk about this in the clinic is binimetinib, is it a non-viable option for the management of patients with BRAF mutated colorectal cancer? And I honestly don’t fully know how to answer this question because I struggle with the idea that there’s a one-size-fits-all approach for patients with BRAF-mutated metastatic colorectal cancer. You know, I think that we realize, clinically, these are heterogeneous patients, and they’re probably biologically these are heterogeneous patients as well, and just kind of talking out loud, it just seems like when we manage these patients, we oftentimes get a lot of more mixed responses and the BRAF mutated context than we do in maybe the BRAF wild-type, I don’t know, if that’s a thing, I’m actually just kind of talking out loud right now, saying that I haven’t really looked into it, but it’s, you just see this more, I think, than kind of in the BRAF wild type where if patients are going to progress, all of their spots are going to be kind of progressing together. Whereas, oftentimes you’ll have responses in two-thirds of the lesions and then massive changes in the opposite direction in the other third. So, again, I think the underlying biologic heterogeneity, as well, is very interesting, and it points to the challenge of treating this disease. We presented this data at ASCO last year. It’s under review right now for a manuscript.

We looked at our cohort of patients at MD Anderson, if you had been evaluated since 2005. And we found 187 patients with BRAF-mutated metastatic CRC. If you were evaluated at our institution, and we just asked a simple question: if we take both ends of the spectrum and compare the differences what do we see? It wasn’t surprising that in the better survival group there were more MSI-high patients; almost 50% of the patients in whom we had data on had MSI-high tumors. But I think that one of the really interesting things as well, is that the median survival from the time of metastatic disease, and this longest survival, was eighty-four months, and in the lowest survival, it was 8.6. And I think that when we, as oncologists see the BRAF mutation, our minds automatically go to this lower end of the spectrum. But I think that we have to kind of keep open minds that there are patients who do have good survival outcomes. When we looked at what is driving out survival in this longest survival group, – what’s driving the long survival outcome? And we saw that was also heterogeneous as well. Some of these patients were able to go to surgery. And as you can see, in the black line here, many of these patients remained disease-free despite having an initial diagnosis of BRAF mutated, metastatic CRC, you know, 5, 6, 7 years out. But interestingly, and as we would expect, as immunotherapy has unfolded, patients who are MSI-high, were also seeing good long-term outcomes. Interestingly, one of these patients had an MSS tumor. But again, there were seven patients that we found who were doing fairly well for long periods of time on MAP-kinase targeted therapies, this included BRAF EGFR options, BRAF MEK options and BRAF inhibitors alone. So, there is some suggestion here to us that there may be a subpopulation of the BRAF mutated who just need targeting in their MAP-kinase, in their particular tumor is addicted to MAP-kinase signaling in the same way that perhaps an EGFR-mutated lung cancer may be addicted to that EGFR mutation, and being equally sensitive to tyrosine kinase inhibition in that context as well. So, I say that to say that even the drivers for favorable outcomes in the study are heterogeneous and do not always conform to what providers can assume. So, I talked about how this is still ongoing, I think, bench to bedside to bench and back to bedside success story, but how can we lift that tale further.

Obviously, in the MSI setting, response rates, even with a concomitant BRAF V600E mutation, is very good for anti-PD1 with or without anti-CTLA4 therapy. But unfortunately, still within the BRAF V600E context, we feel that the MSI-highs, that concomitant microsatellite instability is still a minority of the patients with BRAF V600E tumors. So, this is where we start getting a little bit more in-depth to our data, which we haven’t published yet, but I did want to share with you. It’s a majority of… we think of BRAF V600E tumors as being kind of high tumor mutation burden. And oftentimes I think the assumption is that, well, there’s this association between microsatellite instability, we all know that MSI tumors have higher mutation burdens and so that’s the reason that BRAF V600E tumors carry this association with having high tumor mutational burdens. We actually looked at four datasets that were available to us: the nursing health data from Memorial Sloan Kettering, data from the TCGA, and then from internal data, we had it at MD Anderson, and we said, let’s pull out the MSI high tumors. And let’s look at just the MSS tumors. And look at the patients and compare BRAF-mutated tumors with the BRAF wild types. We saw the same trends across all four datasets that in general MSS, BRAFV600E mutated tumors harbor higher tumor mutation burdens relative to their MSS, BRAF wild-type counterparts. So this may not be something that’s just MSI-high-driven. And if that’s the case, this may argue for some role of immunotherapy as a component for the MSS BRAF V600E story. We’re also excited to see data that was published in Science last year from Dr. Bardelli’s group in Milan, where they looked at BRAFV600E CRC cell lines and showed that when you treat these with dual BRAF EGFR targeting, you induce, in terms of expression, a loss of expression of the mismatch repair of proteins and can kind of create this transient and MSI-high like state. So, if that’s the case, you know, does that make sense that dual, or I guess, triplet, BRAF EGFR plus PD-1 therapy would make sense in this context. And this is something that we’ve seen as well. This is data we haven’t published yet, but this is from an expansion cohort of patients who were treated with vemurafenib, Irinotecan and cetuximab, – patients with BRAFV600E metastatic CRC. This is an example of a patient with a microsatellite stable tumor, but you can see prior to treatment, you don’t see a lot of immune reactive T cells within the tumor microenvironment, but that upon treatment with a BRAF EGFR inhibitor, you do see recruitment of activated CD8 positive cytotoxic T cells within the microenvironment. So that suggested to us that there may be a role for BRAF EGFR plus immune checkpoint therapy when we were pitching these concepts years ago in our initial letters of intent.

Let’s talk about CMS, you know, we all I think all recognize the role of CMS biology and that again, CMS1 is kind of the immune active group of a subset of CRC tumors, again, often associated with microsatellite instability. We also recognize that BRAFV600E tumors kind of aggregate to CMS1 oftentimes as well. And so our question again was is this association uniquely inherent to this association between MSI high CRC with BRAF V 600E mutations or can you see this in the MSS setting as well. So, we looked at data from the SWOG 1406. And again, it hasn’t been published yet either, but will be kind of forthcoming. And we looked specifically at in the red here from the from the SWOG study. And within the MSS context, the relative distribution of BRAFV600E tumors and as again, as you can see almost half of the MSS BRAF tumors were CMS1, the other kind of large proportion was CMS4. And this is different than what we had seen with an internal cohort of patients at MD Anderson who had MSS BRAF wild types, where you see a very low fraction of CMS1 within the BRAF of wild-type MSS contexts. So again what we’re seeing here is that within this MSS CRC population of patients, there may be some enrichment for a group, at least of BRAFV600E MSS tumors, for this more kind of immunologically hot CMS1 phenotype. We recognize from data that was published by several groups several years ago that already signatures can indeed for their subcategorized, BRAFV600E tumors, BM1, the B RAF mutation, one subgroup, it tends to be more of a kind of KRAS MAP kinase. Whereas the BM2 is more consistent with cell cycle gene regulation. And again, you can see here kind of when they look by CMS subtypes as well you see kind of what we had seen in the in the prior slide in the group where you have more MSS, BRAF mutated tumors, you start seeing more CM4 as well. And I think that it’s a little bit early to know how this will kind of play out but again, kind of argues for the heterogeneous subpopulations within the BRAF V600E contexts.

So I think that, this was the reason that we were thinking, about the BRAF, EGFR PD1 combination, and we’re very excited to kind of see Dr. Corcoran’s data that he presented earlier this summer in virtual Barcelona and then I think to you guys, it sounds like in the recent past here, looking at the Dabrafenib Trametinib Spartalizumab combination. So not exactly the same ideas or it’s just kind of given the mechanism of the BRAF but, I think that one of the things that really stuck out to us was the fact that you don’t see a whole lot of kind of toxicity with this combination. When we approached Array and BMS with this idea several years ago, I think that they internally were worried a lot about the skin toxicity that you were going to see with these combinations. And I think that his early data suggests that, this is a fairly well-tolerated regimen. But very interestingly even though the data are still very early and immature, the gross numbers, just comparing the same BRAF MEK combination with or without a PD1 I mean, it’s really encouraging, like, and it’s very encouraging. And similarly, I think that he saw, kind of with this slide, similar to what I had shown you guys with our multiplex immunofluorescence slide, or data several slides back, but again, that BRAF MEK PD1 does seem to recruit active T cells to the tumor microenvironment for hopeful cytotoxicity. So, this kind of led us to our concept at MD Anderson, which is now enrolling, you know, it’s a trial looking specifically at MSS BRAFV600E mutated CRC for patients who have not had prior BRAF, EGFR, MEK therapies or immunotherapy, I think his trial may have been a little more broader, and its eligibility criteria. But, this was the population we wanted to look at first, to kind of see signal and we put 11 patients on kind of amidst the COVID pandemic and having to stop it for 2 30-day windows to evaluate toxicity. And given the fact that this combination hadn’t been looked at before. And so we’ve enrolled, you know, fairly quickly under this trial, and what we’re seeing is that just kind of as Dr. Corcoran has shown, the safety data is very promising for this combination as well. This is the kind of the selected eligibility criteria for study again, MSS BRAF V600E adenocarcinoma of the colon or rectum, at least one but no more than two prior lines of systemic therapy, and then excluding prior BRAF, MEK or other anti EGFR therapies or immunotherapy. So that trial, like I said, is enrolling kind of at the same time, as we were about to launch, Dr. Atreya at UCSF was interested in looking at a BRAF MEK PD1 combination in the same setting. So we’ve worked with her to kind of get these trials going up in parallel, I believe her trial is open now. And I think that they’re kind of talking to her they’ve been enrolling too. Sorry, I actually don’t know what the safety data is of this combination yet. I haven’t heard that from her. But we presume that it’s going to be well tolerated.

So I want to circle back just to how we can learn from what we’re doing in the lab, and move that forward in this context, as well. We love using PDX models at MD Anderson kind of as I’ve talked about earlier, we feel that these kind of help us to pitch concepts for clinical trials to the NCI and pharmaceutical companies. And we’ve shown again, in data that hasn’t been published yet that what happens clinically, the patients on BRAF, EGFR therapies match what happens in their matched mouse avatar. So we looked at five patients who were treated on the SWOG 1406 study and characterized them by their clinical responses either having stable disease or partial response. And what you can see is that the overall trends for the stable disease patients in the blue mirror that for what was happening in the matched mouse whereas what was happening in the patients who responded clinically to the combination, you see have greater reductions, kind of in the tumor size in their mouse avatars as well. One of the interesting things just kind of anecdotally, just to kind of point out here as well, is that, in some of these mouse models, this was just looking at this one, the patient had a response to vemurafenib, irinotecan and cetuximab. You can see that in this mouse model for this patient, the BRAF EGFR, you know, it developed resistance but then when we added the irinotecan you see a drastic reduction in tumor size, there’s also a trend towards the irinotecan being different than that of the BRAF EGFR. Similarly, here, this mouse model, this patient responded to the combination, the mouse didn’t really benefit from irinotecan alone. But when we added all three, we saw that there was improvement. So, again, it may point, that just the one size doesn’t fit all. And also kind of points to the fact that this heterogeneity that I’m talking about. There is a trial, you know, that’s being developed in moving forward looking at chemo with or without encorafenib cetuximab in the frontline setting. And I think that data like this kind of points, the idea that, hey, maybe there’s some meaningful interaction with chemotherapy and targeted therapies in this context that that we will see. The problem is when it comes to mouse models, these are immunocompromised. So the the ability to study, the encorafenib nivolumab cetuximab combination would be limited in traditional PDX models. So, Dr. Karla in our group at MD Anderson’s, all star, his work to develop these humanized PDX models where tumor tissue from a patient and matched blood is used to create these mouse avatars. And we have funding that’s through an early career SPORE award at MD Anderson to do a clinical trial for our study, to look to see if what happens again in the patient mirrors what happens in with the same treatment combination in a developed humanized PDX model. And likewise, if what you see happening immunologically, in terms of changes, matches what happens in the matched humanized PDX model as well. This was funny, I got through the SPORE award the mentor here is John Allison, who won the Nobel Prize for his work in developing immunotherapy for patients with cancer. And it’s been really exciting to have the chance to work with Dr. Allison on and get his input on the design and science of what’s going on here. This was just kind of work showing some stuff we’re doing with Dr. Tusayan in collaboration with her on this trial, I would also ask this to be confidential and not shared as well, out of respect to her developing technology, but what we’re doing is we’re getting her slices of tumor, from pretreatment biopsies taken from patients on this study. And then she’s slicing these tumors and putting them into individual plates. And we’re testing what’s happening, with various combinations. And this is a patient who responded on our study to the triple combination. And what we saw was that when she treated the small slices of the tumor with encorafenib, and cetuximab by day 18, there was some reduction of tumor cell viability with the BRAF EGFR combination. When we added nivolumab, to that combination, we saw a much deeper reduction in cell viability, I didn’t put the nivolumab here as well, but it was that bar was here. So you didn’t see it wasn’t single-agent nivolumab down here either. So it was interesting to us because we felt that her model could likewise when you have the patient’s own immune cells present within the microenvironment may reflect what’s happening in the matched patient, but also that there may be in some patients some meaningful benefits to the addition of nivolumab. So, I hope that I provided here some rationale for why adding immunotherapy to BRAF, EGFR targeted therapies in MSS BRAF mutated setting makes sense, when these patients historically have been unresponsive to immunotherapy alone. I think we’re all encouraged by Dr. Corcoran’s work. And our hope would be that given the recent FDA indication of encorafenib and cetuximab we can build upon that success with a similar approach, and are certainly working to that and then I think that this will be informed further by preclinical and translational work that remains ongoing.

I was asked just to talk a little bit about atypical BRAF mutations in CRC. These are slides that I borrowed, full disclosure from Dr. Benny Johnson in our group at MD Anderson who really has led our group’s efforts, very valiantly to kind of work. This is a slide I think, had come from maybe Dr. Yeager at Memorial, I’m just kind of showing how the different mechanisms have the traditional RAS independence, BRAF V600E monomer, we associate with a class I, the dimerized. BRAF mutants, we see kind of with class II, and then kind of the, the BRAF inert, class IIIs that kind of has been characterized is these more atypical BRAF mutations. Again, we recognize that, as you can see, in all three of these, the atypical BRAFs tend to fare better than the BRAF V600Es and I would say I don’t think that this is something that all oncologists realize it’s not uncommon, so you get a referral or a call from outside doctors saying, hey, I have a patient with the BRAF mutation can I send them for your trial, and then we find out that it’s like a D594G mutation, kind of one of these more atypicals. So I think this is something we’re really trying to get the word out with oncologists as well, kind of as we learn more. And this is kind of, again, Dr. Johnson here, who I really just want to plug I think, has really had a passion for leading this effort in our group at MD Anderson, but just kind of some of the novel approaches that we’re trying to take at MD Anderson for kind of how we triage patients to various trials, according to their specific BRAF mutation, whether it’s a V600E, or a non V600E. So that kind of sums up what I had to say. I try to be active on Twitter, if you have any questions, please just let me know.

Manju George 37:06
So if I can, I’m going to start the questions, you can hear me, right?

Dr. Morris 37:12
Yes, I can. Yeah.

Manju George 37:13
So you were talking about the heterogeneity, so I was kind of wondering, in the unpublished data that you have, can you said that one part was the MAP kinase signaling pathway, and the other one was a different, you know, cell cycle and all of those pathways? So are you in your different trials are you attempting to find out what those different groups are? And in the reason I asked is, just like you said, we in our group, we find a lot of heterogeneity in how people respond to the different treatments for the BRAF V600E mutation. So it will make sense to us to if we could know what they were, because most of the patients, they already have their genomic testing done. And then if there’s some way to know upfront that you are in the 8.4 months category, not in the 84-month category, then you can plan accordingly how you have to prioritize treatment, right?

Dr. Morris 38:14
Yeah. So I think we’re looking at that we’re certainly collecting biopsies, to look at the transcriptome in RNA sequencing of these patients, and that may kind of inform on what their CMS classifications or BM1 BM2 classifications. I believe that Pfizer is looking at that on the patients who were on the Beacon study as well. So I think it’ll be very interesting if you see here that the BM1 patients are the ones who maybe had more benefit with the triplet, if there was a preferential added benefit with the addition of the MEK inhibitors that the BM1s than the BM twos. So, I’m very interested in this question as well and I hope that we’ll get some information from Pfizer about that. I think that Corcoran had published from his triplet, the dabrafenib, tremetinib, panitumumab work earlier this summer in clinical cancer research some signal kind of saying that, but I think it’ll be very interesting, in a larger cohort in a randomized trial to look at that in a kind of post hoc analysis.

Manju George 39:33
And then my other question would be like, there is this test called immuno score, right? Do you think those kinds of tests can tell you more, I was kind of wondering that if there was any efforts to develop some kind of assays so that you can look at a BRAF patient and say that this would be more BM1 or BM2, even the consensus molecular subtypes if there is, do you know if there is something like that being developed or going on?

Dr. Morris 40:02
I mean, not that I’m aware of I’m sure that it probably is being worked on. And it’s a really good point. But it’s not something that we’re actively working on now.

Manju George 40:13
Okay. And then the other person that you’re collaborating with Houston Yun, like the tissue culture thing. So it’s like an entire section of the biopsies is grown in the wells and you’re seeing that, when you try the combination treatment with the immunotherapy, just with that not inside an animal, you’re still seeing a response. Right? That’s what you said?

Dr. Morris 40:40
Yeah, that’s right. So, I mean, again, like, we’ve put only 11 patients on our trial thus far. And I mean, in full disclosure, with the pandemic, we had to shut down understandably, all optional biopsies for several months. So this limited our ability, thus far to look at this in high numbers, but it is something that we’re opening back up now. And we’ll be looking more stringently to see is there a signal? You always see kind of in the presentations, the N of one? So it’s hard to know for sure iff that’s truly representative, or if people cherry-pick the best for you to show? I don’t know,

Manju George 41:26
Okay. And then you have some results by GI-ASCO. Is that right?

Dr. Morris 41:36
Yeah, I mean, if so, it’d be a late-breaking abstract. I think we have 26 patients that we would plan on putting on study, so we’re just about halfway there. So it would either be a late-breaking, or probably the ASCO next year, we’ll see. We’re moving forward. And we talked to the NCI about what the next step would look like in a more definitive fashion.

Manju George 42:03
So, thank you, let’s see if others have questions. Questions, anyone?

COLONTOWN Member 42:29
Know, I feel like I need to, like, listen to this all again and consume so much information here, it’s been very helpful. But I was really interested to hear about some of the other mutations, you know, that we’re seeing, that are driving when BRAF you know, kind of becomes, you know, less important. So, while you know, I’m, again, I kind of feel like I need to, like review all of that, again, because I don’t think I caught it all. But you know, any other thoughts you have around that? And how we should think about how does treatment progress, as you know, maybe get to the end of what targeted BRAF therapy can do how do you make the decision to move forward from there?

Dr. Morris 43:10
Yeah, I mean, I think it’s a really good question. I think one of the things that hasn’t been fully looked at yet is with what you see in a RAS wild-type setting where there’s this idea of, these patients developing these acquired RAS, KRAS NRAS mutations. And then when you pull away the anti-EGFR therapy, that selective pressure is lost, and that acquired mechanism of resistance decays back down. Dr. Christine, Parsighian in our group had a really nice paper just kind of showing the kinetics of in the acquire resistance study to anti-EGFR therapy, the median half-life is about four to five months. So, before by the time you see 50% of that acquired resistance mechanism go away and then you can re-challenge these patients and see some benefit, and that’s being looked at in multiple clinical trials right now. And then the question is when a patient progresses on BRAF EGFR therapy, is that the end ever in their story and journey for EGFR therapy, or is there a role for rechallenge? None of us knows that. And I think it would be really, really interesting to look at. So I mean, yeah, like I think that’s something we’ve thought about, and I’m not aware of any data out there that’s shown that that’s successful or not successful.

COLONTOWN Member 44:53
Thank you, Manju. Dr. Morris, My name is Rashmi and I’m a caregiver to my husband with BRAF. My question to you is we know the pathway of the BRAF and the EGFR and the MEK and Erk. Looking at the three trials between Dr. Corcoran’s Dr. Kopetz and Dr. Atreya’s it seems that the BRAF and immunotherapy are similar. What’s different is the EGFR versus the MEK. Would you speak something to that? Is there I mean, your study is leaning towards the EGFR versus Dr. Corcoran’s is looking more at the MEK inhibitor?

Dr. Morris 45:39
Yeah, I mean, I think that’s what he’s seeing and the rationale for what we did what we did was similar, I don’t think that we know that BRAF, EGFR PD1 is any better or worse than BRAF MEK PD1, I think for us we realized several years ago that with the SWOG data that probably BRAF EGFR was going to get approved. And how we were going to be able to develop a strategy to, if successful to roll this out to our patients. It made sense in the context of a BRAF EGFR setting. So that’s why we we kind of went with that for approach years ago. He ‘s done a lot of work in the BRAF, MEK. I mean, I can’t speak to why they chose that, but I don’t think that we know that there’s a difference or why or if there’s a difference. Thank you.

Manju George 46:54
Okay, again, I’m going back to the CMS1 and CMS4 subtypes. So in our group, we have patients, we have one patient who has been almost NED, she’s been on the Beacon triplet, and she’s that one patient,who has gotten a phenomenal response. For most of the patients, we see that they’re on the triplet for a certain time, and then you know, things start growing, and then they get back on FOLFIRI + bev and that seems to work really well. So we have a group of patients for whom the FOLFIRI plus bev or FOLFOXIRI plus bev seems to give the best response. So again, I was kind of wondering whether, you know, that goes back to what you said about the BRAF, MEK, ERK pathway being important versus the cell cycle one, because then in that case, the cell cycle one would be more susceptible to chemo, right.?

Dr. Morris 48:01
Yeah, I mean, in theory, yes, but kind of given the fact that, these patients don’t respond in a treatment-refractory setting very well to chemotherapy, whether that translates into, clinical reality, I don’t think we know yet.

Manju George 48:22
Again, like, my push will be to if there could be an assay to tell you what kind of BRAF you are, from a patient perspective, that could make a big difference to patients as to how they approach the different treatments.

Dr. Morris 48:33
It would help us to Yeah, I mean, I think we’re very interested in understanding the different biologies, because again, we recognize it’s not a one-size-fits-all approach here.

Manju George 48:53
I think if there are no more questions, thank you very much for your time, and I guess that people, there are about 250 members many of them will watch the video because we’re going to post this in our group. And then there may be more questions, so then I’ll probably get them to you either by email or on Twitter. And thank you so much for your time.

Dr. Morris 49:20
Thank you, I appreciate it so much.

Manju George 49:23
Bye. Bye. Thanks, everyone.

DocTalk
2020
Dr. Corcoran
BRAF

Dr. Ryan Corcoran of Massachusetts General Hospital provides a look at current options and research for BRAF V600E colorectal cancer in this COLONTOWN Doc Talk, recorded in August 2020.

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Targeted therapies and immunotherapy

Targeted therapies and immunotherapy

DocTalk
2020
Dr. Morris
BRAF
Immunotherapy

Dr. Van Morris from MD Anderson discussed combining targeted therapies and immunotherapy for BRAF patients in this COLONTOWN Doc Talk, recorded in August 2020. 

Dr. Morris 00:00
Yeah, thank you guys for inviting me in, as you refer to, we really appreciate just the support of COLONTOWN in general. This goes beyond just kind of, as you mentioned, your support for the COBRA trial, and in the BRAF trials as well, which you guys are obviously incredible in mobilizing patients, through social media, but I will say more experientially as well, you know, this group means a lot to my patients. And it’s common for me to have that patient come to MD Anderson, who’s newly diagnosed with colon cancer and is very understandably afraid and, to hear kind of their testimonies with how helpful COLONTOWN has been, and helping them and other patient advocacy groups who have been in helping them to understand kind of what’s going on with the shock of this news in their lives. So we just want to say we as oncologists appreciate your commitment to helping patients in this effort we’re all fighting against. I will say, you know, I realized that Dr. Corcoran had presented I think, a week or so ago. So some of this may overlap, I’ll try to kind of interject my own opinions about this, but there will be some overlap. There may be some slides that we haven’t published yet. But I did want to share these just share our data. So when I hit the slides, I want to share that kind of why we think what we think, but also just maybe ask for those particular slides, just kind of keeping those confidential, because we haven’t really published this data yet. I’m gonna be talking about kind of combining targeted therapies with immunotherapy. And maybe not using a one-size-fits-all approach for the management of BRAF-mutated metastatic colorectal cancer.

So I always just feel that it’s important to start out with, a patient presentation just to kind of put into context what we’re up against here, and this was a patient that I met during my first year on faculty at MD Anderson. She was a 35-year-old lady from the valley in southern Texas who presented to the ER, with abdominal pain, no past medical history at all. She had a 13-year-old son, a single mother. When she presented with abdominal pain her surgeons locally felt that she had issues with their gallbladder and took her to surgery to remove the gallbladder and were surprised, instead, to find a large transverse colon mass with diffuse metastatic disease in the peritoneum that was responsible for the abdominal pain. The pathology ultimately showed a microsatellite-stable BRAF-mutated CRC tumor. She then came to MD Anderson, where, by the time she arrived at MD Anderson, she already had evolved a large bowel obstruction from her tumor. So this was in 2016, we started her on treatment with FOLFOXFIRI. And she had some initial clinical improvement, but unfortunately, within three months of what is really throwing the kitchen sink at this tumor, in terms of cytotoxic chemotherapy, she was already developing signs of clinical and radiographic progression. Within four months of her initial presentation, the single mother was transferred to hospice and it was horrific to watch this unfold as a new oncologist at that point in time, and I think it just really speaks to the challenge we face with BRAF-mutated colorectal cancer, we recognize that this is a unique population with regards to clinical outcomes. As I’ve alluded to, the responses to chemotherapy aren’t great as we’re used to seeing our BRAF wild-type patients, we recognize the unique pathology here just in terms of where these tumors commonly arise from and how they look under the microscope. And with the genome as well we’ll talk about later the high tumor burden may extend beyond the association with MSI high into the MSS setting as well. But also it’s unique with regard to the epigenome and we recognize these to be hypermethylated tumors. I think that this still represents an untapped biology, that is potentially targetable with regards to this particular subpopulation of colorectal cancer, and possibly, with respect to the transcriptome as well, and we’ll talk kind of about CMS correlations a little bit later, too. So we’re seeing a unique but challenging, but potentially intervenable, clinical presentation. And I’ll kind of go through these slides quickly, because we all recognize that the BRAF mutations, even though it’s typically called an uncommon subpopulation of CRC, when you still consider it’s 5 to 10% of all the patients who have CRC and colorectal cancer represents one of the top causes for cancer mortality in the United States. By absolute numbers, it’s still a large fraction of patients who are faced with the challenge of BRAF-mutated, metastatic CRC. And unfortunately, as we all know here the successes of targeted therapies in terms of response rates that other cancer types see with the same exact BRAF mutation, we just don’t see those in data that Dr. Kopetz and then Dr. Corcoran had shown with BRAF monotherapy and BRAF MEK combination therapy, it just we don’t see either the response rates or the survival outcomes, that we’re accustomed to seeing in the context of other solid tumors as well. So this, oftentimes, when I hear people say that we should be treating tumors agnostically to the primary and according to the molecular subtype, I always just cringe when I hear that, because I think that again, that’s a one-size-fits-all approach. And I think that the BRAF V600E story for colorectal cancer is a very good example of why we can’t practice under such an umbrella. This is just kind of data that, again, we’re all familiar with, from eight years ago now, just kind of showing why in the context of CRC, blocking the BRAF V600E oncoprotein with agents that work in other contexts doesn’t work as well, to kind of have this upregulation of MAP kinase signaling, you get kind of this constitutive activation of… I think I say this to say it again, I don’t… correct me if I’m wrong here, but I think I can probably go pretty quickly through the next couple of slides. I think this group fully understands the recent clinical trials, which have led to clinical outcomes, or new clinical options for these patients; but it was really exciting, I think, to be involved early on with Dr. Kopetz as a fellow even, and working on the SWOG protocol, and seeing this translate from an idea in the data that was coming out of the lab, to showing some benefit in patients.

We looked at a model too that is a different model that was initially had disease control with Vemurafenib and Cetuximab. And we saw similar results in PDX, as we were seeing acquisition of acquired KRAS mutations. This is something that in the Vemurafenib study, when they went to the baseline samples of these patients and looked in their plasma, droplet digital PCR sequencing showed the presence of very, very low allelic frequency of KRAS mutants, you can see 0.21%, 0.31% that were present at baseline that are oftentimes below the limit of detection of assays that were available at that time. When we looked at patients who were treated on a phase one trial at MD Anderson with Vemurafenib, Cetuximab and Irinotecan, we saw that in the black here, you see the relative allelic frequency of the BRAF V600e gene in ctDNA. But again, we were finding in patients the same thing that we had seen in the PDX models, that there were these acquired oncogenes showing up in the resistant setting that had not been present in the pretreatment specimens. So our question then, at that time, and this is the data that we took to Array when Kopetz was pitching the BEACON approach, was: can the addition of the MEK inhibitor overcome the resistance to BRAF, EGFR targeted therapies. I also think with the SHP and SOS inhibitors, which are coming out as well, this also kind of represents something we’re thinking about moving forward as well. And again, what we saw on our PDX was, again, when these tumors grew resistant to the Vemurafenib and Cetuximab, if we added a MEK inhibitor, we could see sensitivity; and I think that Corcoran and his group beat us to the punch in publishing this data, but we certainly felt that what we’re seeing in the lab were being validated by his group as well. And so again, it made a lot of sense to us. So, as we all know, these thoughts led to the creation of the BEACON study. This is kind of flipped here, but the overall response rate of 26% with the triplet, and the 20%, with the doublet, beat that of Irinotecan and Cetuximab. And as you guys are all aware, the addition of the MEK inhibitor didn’t add any overall survival difference between BRAF EGFR and, very excitingly, (oh, this should actually be changed)… Encorafenib, Cetuximab, in February or April 2020, became FDA approved. So this was obviously super exciting for us, and for our patients as well. So one of the questions that comes up with our patients when we talk about this in the clinic is binimetinib, is it a non-viable option for the management of patients with BRAF mutated colorectal cancer? And I honestly don’t fully know how to answer this question because I struggle with the idea that there’s a one-size-fits-all approach for patients with BRAF-mutated metastatic colorectal cancer. You know, I think that we realize, clinically, these are heterogeneous patients, and they’re probably biologically these are heterogeneous patients as well, and just kind of talking out loud, it just seems like when we manage these patients, we oftentimes get a lot of more mixed responses and the BRAF mutated context than we do in maybe the BRAF wild-type, I don’t know, if that’s a thing, I’m actually just kind of talking out loud right now, saying that I haven’t really looked into it, but it’s, you just see this more, I think, than kind of in the BRAF wild type where if patients are going to progress, all of their spots are going to be kind of progressing together. Whereas, oftentimes you’ll have responses in two-thirds of the lesions and then massive changes in the opposite direction in the other third. So, again, I think the underlying biologic heterogeneity, as well, is very interesting, and it points to the challenge of treating this disease. We presented this data at ASCO last year. It’s under review right now for a manuscript.

We looked at our cohort of patients at MD Anderson, if you had been evaluated since 2005. And we found 187 patients with BRAF-mutated metastatic CRC. If you were evaluated at our institution, and we just asked a simple question: if we take both ends of the spectrum and compare the differences what do we see? It wasn’t surprising that in the better survival group there were more MSI-high patients; almost 50% of the patients in whom we had data on had MSI-high tumors. But I think that one of the really interesting things as well, is that the median survival from the time of metastatic disease, and this longest survival, was eighty-four months, and in the lowest survival, it was 8.6. And I think that when we, as oncologists see the BRAF mutation, our minds automatically go to this lower end of the spectrum. But I think that we have to kind of keep open minds that there are patients who do have good survival outcomes. When we looked at what is driving out survival in this longest survival group, – what’s driving the long survival outcome? And we saw that was also heterogeneous as well. Some of these patients were able to go to surgery. And as you can see, in the black line here, many of these patients remained disease-free despite having an initial diagnosis of BRAF mutated, metastatic CRC, you know, 5, 6, 7 years out. But interestingly, and as we would expect, as immunotherapy has unfolded, patients who are MSI-high, were also seeing good long-term outcomes. Interestingly, one of these patients had an MSS tumor. But again, there were seven patients that we found who were doing fairly well for long periods of time on MAP-kinase targeted therapies, this included BRAF EGFR options, BRAF MEK options and BRAF inhibitors alone. So, there is some suggestion here to us that there may be a subpopulation of the BRAF mutated who just need targeting in their MAP-kinase, in their particular tumor is addicted to MAP-kinase signaling in the same way that perhaps an EGFR-mutated lung cancer may be addicted to that EGFR mutation, and being equally sensitive to tyrosine kinase inhibition in that context as well. So, I say that to say that even the drivers for favorable outcomes in the study are heterogeneous and do not always conform to what providers can assume. So, I talked about how this is still ongoing, I think, bench to bedside to bench and back to bedside success story, but how can we lift that tale further.

Obviously, in the MSI setting, response rates, even with a concomitant BRAF V600E mutation, is very good for anti-PD1 with or without anti-CTLA4 therapy. But unfortunately, still within the BRAF V600E context, we feel that the MSI-highs, that concomitant microsatellite instability is still a minority of the patients with BRAF V600E tumors. So, this is where we start getting a little bit more in-depth to our data, which we haven’t published yet, but I did want to share with you. It’s a majority of… we think of BRAF V600E tumors as being kind of high tumor mutation burden. And oftentimes I think the assumption is that, well, there’s this association between microsatellite instability, we all know that MSI tumors have higher mutation burdens and so that’s the reason that BRAF V600E tumors carry this association with having high tumor mutational burdens. We actually looked at four datasets that were available to us: the nursing health data from Memorial Sloan Kettering, data from the TCGA, and then from internal data, we had it at MD Anderson, and we said, let’s pull out the MSI high tumors. And let’s look at just the MSS tumors. And look at the patients and compare BRAF-mutated tumors with the BRAF wild types. We saw the same trends across all four datasets that in general MSS, BRAFV600E mutated tumors harbor higher tumor mutation burdens relative to their MSS, BRAF wild-type counterparts. So this may not be something that’s just MSI-high-driven. And if that’s the case, this may argue for some role of immunotherapy as a component for the MSS BRAF V600E story. We’re also excited to see data that was published in Science last year from Dr. Bardelli’s group in Milan, where they looked at BRAFV600E CRC cell lines and showed that when you treat these with dual BRAF EGFR targeting, you induce, in terms of expression, a loss of expression of the mismatch repair of proteins and can kind of create this transient and MSI-high like state. So, if that’s the case, you know, does that make sense that dual, or I guess, triplet, BRAF EGFR plus PD-1 therapy would make sense in this context. And this is something that we’ve seen as well. This is data we haven’t published yet, but this is from an expansion cohort of patients who were treated with vemurafenib, Irinotecan and cetuximab, – patients with BRAFV600E metastatic CRC. This is an example of a patient with a microsatellite stable tumor, but you can see prior to treatment, you don’t see a lot of immune reactive T cells within the tumor microenvironment, but that upon treatment with a BRAF EGFR inhibitor, you do see recruitment of activated CD8 positive cytotoxic T cells within the microenvironment. So that suggested to us that there may be a role for BRAF EGFR plus immune checkpoint therapy when we were pitching these concepts years ago in our initial letters of intent.

Let’s talk about CMS, you know, we all I think all recognize the role of CMS biology and that again, CMS1 is kind of the immune active group of a subset of CRC tumors, again, often associated with microsatellite instability. We also recognize that BRAFV600E tumors kind of aggregate to CMS1 oftentimes as well. And so our question again was is this association uniquely inherent to this association between MSI high CRC with BRAF V 600E mutations or can you see this in the MSS setting as well. So, we looked at data from the SWOG 1406. And again, it hasn’t been published yet either, but will be kind of forthcoming. And we looked specifically at in the red here from the from the SWOG study. And within the MSS context, the relative distribution of BRAFV600E tumors and as again, as you can see almost half of the MSS BRAF tumors were CMS1, the other kind of large proportion was CMS4. And this is different than what we had seen with an internal cohort of patients at MD Anderson who had MSS BRAF wild types, where you see a very low fraction of CMS1 within the BRAF of wild-type MSS contexts. So again what we’re seeing here is that within this MSS CRC population of patients, there may be some enrichment for a group, at least of BRAFV600E MSS tumors, for this more kind of immunologically hot CMS1 phenotype. We recognize from data that was published by several groups several years ago that already signatures can indeed for their subcategorized, BRAFV600E tumors, BM1, the B RAF mutation, one subgroup, it tends to be more of a kind of KRAS MAP kinase. Whereas the BM2 is more consistent with cell cycle gene regulation. And again, you can see here kind of when they look by CMS subtypes as well you see kind of what we had seen in the in the prior slide in the group where you have more MSS, BRAF mutated tumors, you start seeing more CM4 as well. And I think that it’s a little bit early to know how this will kind of play out but again, kind of argues for the heterogeneous subpopulations within the BRAF V600E contexts.

So I think that, this was the reason that we were thinking, about the BRAF, EGFR PD1 combination, and we’re very excited to kind of see Dr. Corcoran’s data that he presented earlier this summer in virtual Barcelona and then I think to you guys, it sounds like in the recent past here, looking at the Dabrafenib Trametinib Spartalizumab combination. So not exactly the same ideas or it’s just kind of given the mechanism of the BRAF but, I think that one of the things that really stuck out to us was the fact that you don’t see a whole lot of kind of toxicity with this combination. When we approached Array and BMS with this idea several years ago, I think that they internally were worried a lot about the skin toxicity that you were going to see with these combinations. And I think that his early data suggests that, this is a fairly well-tolerated regimen. But very interestingly even though the data are still very early and immature, the gross numbers, just comparing the same BRAF MEK combination with or without a PD1 I mean, it’s really encouraging, like, and it’s very encouraging. And similarly, I think that he saw, kind of with this slide, similar to what I had shown you guys with our multiplex immunofluorescence slide, or data several slides back, but again, that BRAF MEK PD1 does seem to recruit active T cells to the tumor microenvironment for hopeful cytotoxicity. So, this kind of led us to our concept at MD Anderson, which is now enrolling, you know, it’s a trial looking specifically at MSS BRAFV600E mutated CRC for patients who have not had prior BRAF, EGFR, MEK therapies or immunotherapy, I think his trial may have been a little more broader, and its eligibility criteria. But, this was the population we wanted to look at first, to kind of see signal and we put 11 patients on kind of amidst the COVID pandemic and having to stop it for 2 30-day windows to evaluate toxicity. And given the fact that this combination hadn’t been looked at before. And so we’ve enrolled, you know, fairly quickly under this trial, and what we’re seeing is that just kind of as Dr. Corcoran has shown, the safety data is very promising for this combination as well. This is the kind of the selected eligibility criteria for study again, MSS BRAF V600E adenocarcinoma of the colon or rectum, at least one but no more than two prior lines of systemic therapy, and then excluding prior BRAF, MEK or other anti EGFR therapies or immunotherapy. So that trial, like I said, is enrolling kind of at the same time, as we were about to launch, Dr. Atreya at UCSF was interested in looking at a BRAF MEK PD1 combination in the same setting. So we’ve worked with her to kind of get these trials going up in parallel, I believe her trial is open now. And I think that they’re kind of talking to her they’ve been enrolling too. Sorry, I actually don’t know what the safety data is of this combination yet. I haven’t heard that from her. But we presume that it’s going to be well tolerated.

So I want to circle back just to how we can learn from what we’re doing in the lab, and move that forward in this context, as well. We love using PDX models at MD Anderson kind of as I’ve talked about earlier, we feel that these kind of help us to pitch concepts for clinical trials to the NCI and pharmaceutical companies. And we’ve shown again, in data that hasn’t been published yet that what happens clinically, the patients on BRAF, EGFR therapies match what happens in their matched mouse avatar. So we looked at five patients who were treated on the SWOG 1406 study and characterized them by their clinical responses either having stable disease or partial response. And what you can see is that the overall trends for the stable disease patients in the blue mirror that for what was happening in the matched mouse whereas what was happening in the patients who responded clinically to the combination, you see have greater reductions, kind of in the tumor size in their mouse avatars as well. One of the interesting things just kind of anecdotally, just to kind of point out here as well, is that, in some of these mouse models, this was just looking at this one, the patient had a response to vemurafenib, irinotecan and cetuximab. You can see that in this mouse model for this patient, the BRAF EGFR, you know, it developed resistance but then when we added the irinotecan you see a drastic reduction in tumor size, there’s also a trend towards the irinotecan being different than that of the BRAF EGFR. Similarly, here, this mouse model, this patient responded to the combination, the mouse didn’t really benefit from irinotecan alone. But when we added all three, we saw that there was improvement. So, again, it may point, that just the one size doesn’t fit all. And also kind of points to the fact that this heterogeneity that I’m talking about. There is a trial, you know, that’s being developed in moving forward looking at chemo with or without encorafenib cetuximab in the frontline setting. And I think that data like this kind of points, the idea that, hey, maybe there’s some meaningful interaction with chemotherapy and targeted therapies in this context that that we will see. The problem is when it comes to mouse models, these are immunocompromised. So the the ability to study, the encorafenib nivolumab cetuximab combination would be limited in traditional PDX models. So, Dr. Karla in our group at MD Anderson’s, all star, his work to develop these humanized PDX models where tumor tissue from a patient and matched blood is used to create these mouse avatars. And we have funding that’s through an early career SPORE award at MD Anderson to do a clinical trial for our study, to look to see if what happens again in the patient mirrors what happens in with the same treatment combination in a developed humanized PDX model. And likewise, if what you see happening immunologically, in terms of changes, matches what happens in the matched humanized PDX model as well. This was funny, I got through the SPORE award the mentor here is John Allison, who won the Nobel Prize for his work in developing immunotherapy for patients with cancer. And it’s been really exciting to have the chance to work with Dr. Allison on and get his input on the design and science of what’s going on here. This was just kind of work showing some stuff we’re doing with Dr. Tusayan in collaboration with her on this trial, I would also ask this to be confidential and not shared as well, out of respect to her developing technology, but what we’re doing is we’re getting her slices of tumor, from pretreatment biopsies taken from patients on this study. And then she’s slicing these tumors and putting them into individual plates. And we’re testing what’s happening, with various combinations. And this is a patient who responded on our study to the triple combination. And what we saw was that when she treated the small slices of the tumor with encorafenib, and cetuximab by day 18, there was some reduction of tumor cell viability with the BRAF EGFR combination. When we added nivolumab, to that combination, we saw a much deeper reduction in cell viability, I didn’t put the nivolumab here as well, but it was that bar was here. So you didn’t see it wasn’t single-agent nivolumab down here either. So it was interesting to us because we felt that her model could likewise when you have the patient’s own immune cells present within the microenvironment may reflect what’s happening in the matched patient, but also that there may be in some patients some meaningful benefits to the addition of nivolumab. So, I hope that I provided here some rationale for why adding immunotherapy to BRAF, EGFR targeted therapies in MSS BRAF mutated setting makes sense, when these patients historically have been unresponsive to immunotherapy alone. I think we’re all encouraged by Dr. Corcoran’s work. And our hope would be that given the recent FDA indication of encorafenib and cetuximab we can build upon that success with a similar approach, and are certainly working to that and then I think that this will be informed further by preclinical and translational work that remains ongoing.

I was asked just to talk a little bit about atypical BRAF mutations in CRC. These are slides that I borrowed, full disclosure from Dr. Benny Johnson in our group at MD Anderson who really has led our group’s efforts, very valiantly to kind of work. This is a slide I think, had come from maybe Dr. Yeager at Memorial, I’m just kind of showing how the different mechanisms have the traditional RAS independence, BRAF V600E monomer, we associate with a class I, the dimerized. BRAF mutants, we see kind of with class II, and then kind of the, the BRAF inert, class IIIs that kind of has been characterized is these more atypical BRAF mutations. Again, we recognize that, as you can see, in all three of these, the atypical BRAFs tend to fare better than the BRAF V600Es and I would say I don’t think that this is something that all oncologists realize it’s not uncommon, so you get a referral or a call from outside doctors saying, hey, I have a patient with the BRAF mutation can I send them for your trial, and then we find out that it’s like a D594G mutation, kind of one of these more atypicals. So I think this is something we’re really trying to get the word out with oncologists as well, kind of as we learn more. And this is kind of, again, Dr. Johnson here, who I really just want to plug I think, has really had a passion for leading this effort in our group at MD Anderson, but just kind of some of the novel approaches that we’re trying to take at MD Anderson for kind of how we triage patients to various trials, according to their specific BRAF mutation, whether it’s a V600E, or a non V600E. So that kind of sums up what I had to say. I try to be active on Twitter, if you have any questions, please just let me know.

Manju George 37:06
So if I can, I’m going to start the questions, you can hear me, right?

Dr. Morris 37:12
Yes, I can. Yeah.

Manju George 37:13
So you were talking about the heterogeneity, so I was kind of wondering, in the unpublished data that you have, can you said that one part was the MAP kinase signaling pathway, and the other one was a different, you know, cell cycle and all of those pathways? So are you in your different trials are you attempting to find out what those different groups are? And in the reason I asked is, just like you said, we in our group, we find a lot of heterogeneity in how people respond to the different treatments for the BRAF V600E mutation. So it will make sense to us to if we could know what they were, because most of the patients, they already have their genomic testing done. And then if there’s some way to know upfront that you are in the 8.4 months category, not in the 84-month category, then you can plan accordingly how you have to prioritize treatment, right?

Dr. Morris 38:14
Yeah. So I think we’re looking at that we’re certainly collecting biopsies, to look at the transcriptome in RNA sequencing of these patients, and that may kind of inform on what their CMS classifications or BM1 BM2 classifications. I believe that Pfizer is looking at that on the patients who were on the Beacon study as well. So I think it’ll be very interesting if you see here that the BM1 patients are the ones who maybe had more benefit with the triplet, if there was a preferential added benefit with the addition of the MEK inhibitors that the BM1s than the BM twos. So, I’m very interested in this question as well and I hope that we’ll get some information from Pfizer about that. I think that Corcoran had published from his triplet, the dabrafenib, tremetinib, panitumumab work earlier this summer in clinical cancer research some signal kind of saying that, but I think it’ll be very interesting, in a larger cohort in a randomized trial to look at that in a kind of post hoc analysis.

Manju George 39:33
And then my other question would be like, there is this test called immuno score, right? Do you think those kinds of tests can tell you more, I was kind of wondering that if there was any efforts to develop some kind of assays so that you can look at a BRAF patient and say that this would be more BM1 or BM2, even the consensus molecular subtypes if there is, do you know if there is something like that being developed or going on?

Dr. Morris 40:02
I mean, not that I’m aware of I’m sure that it probably is being worked on. And it’s a really good point. But it’s not something that we’re actively working on now.

Manju George 40:13
Okay. And then the other person that you’re collaborating with Houston Yun, like the tissue culture thing. So it’s like an entire section of the biopsies is grown in the wells and you’re seeing that, when you try the combination treatment with the immunotherapy, just with that not inside an animal, you’re still seeing a response. Right? That’s what you said?

Dr. Morris 40:40
Yeah, that’s right. So, I mean, again, like, we’ve put only 11 patients on our trial thus far. And I mean, in full disclosure, with the pandemic, we had to shut down understandably, all optional biopsies for several months. So this limited our ability, thus far to look at this in high numbers, but it is something that we’re opening back up now. And we’ll be looking more stringently to see is there a signal? You always see kind of in the presentations, the N of one? So it’s hard to know for sure iff that’s truly representative, or if people cherry-pick the best for you to show? I don’t know,

Manju George 41:26
Okay. And then you have some results by GI-ASCO. Is that right?

Dr. Morris 41:36
Yeah, I mean, if so, it’d be a late-breaking abstract. I think we have 26 patients that we would plan on putting on study, so we’re just about halfway there. So it would either be a late-breaking, or probably the ASCO next year, we’ll see. We’re moving forward. And we talked to the NCI about what the next step would look like in a more definitive fashion.

Manju George 42:03
So, thank you, let’s see if others have questions. Questions, anyone?

COLONTOWN Member 42:29
Know, I feel like I need to, like, listen to this all again and consume so much information here, it’s been very helpful. But I was really interested to hear about some of the other mutations, you know, that we’re seeing, that are driving when BRAF you know, kind of becomes, you know, less important. So, while you know, I’m, again, I kind of feel like I need to, like review all of that, again, because I don’t think I caught it all. But you know, any other thoughts you have around that? And how we should think about how does treatment progress, as you know, maybe get to the end of what targeted BRAF therapy can do how do you make the decision to move forward from there?

Dr. Morris 43:10
Yeah, I mean, I think it’s a really good question. I think one of the things that hasn’t been fully looked at yet is with what you see in a RAS wild-type setting where there’s this idea of, these patients developing these acquired RAS, KRAS NRAS mutations. And then when you pull away the anti-EGFR therapy, that selective pressure is lost, and that acquired mechanism of resistance decays back down. Dr. Christine, Parsighian in our group had a really nice paper just kind of showing the kinetics of in the acquire resistance study to anti-EGFR therapy, the median half-life is about four to five months. So, before by the time you see 50% of that acquired resistance mechanism go away and then you can re-challenge these patients and see some benefit, and that’s being looked at in multiple clinical trials right now. And then the question is when a patient progresses on BRAF EGFR therapy, is that the end ever in their story and journey for EGFR therapy, or is there a role for rechallenge? None of us knows that. And I think it would be really, really interesting to look at. So I mean, yeah, like I think that’s something we’ve thought about, and I’m not aware of any data out there that’s shown that that’s successful or not successful.

COLONTOWN Member 44:53
Thank you, Manju. Dr. Morris, My name is Rashmi and I’m a caregiver to my husband with BRAF. My question to you is we know the pathway of the BRAF and the EGFR and the MEK and Erk. Looking at the three trials between Dr. Corcoran’s Dr. Kopetz and Dr. Atreya’s it seems that the BRAF and immunotherapy are similar. What’s different is the EGFR versus the MEK. Would you speak something to that? Is there I mean, your study is leaning towards the EGFR versus Dr. Corcoran’s is looking more at the MEK inhibitor?

Dr. Morris 45:39
Yeah, I mean, I think that’s what he’s seeing and the rationale for what we did what we did was similar, I don’t think that we know that BRAF, EGFR PD1 is any better or worse than BRAF MEK PD1, I think for us we realized several years ago that with the SWOG data that probably BRAF EGFR was going to get approved. And how we were going to be able to develop a strategy to, if successful to roll this out to our patients. It made sense in the context of a BRAF EGFR setting. So that’s why we we kind of went with that for approach years ago. He ‘s done a lot of work in the BRAF, MEK. I mean, I can’t speak to why they chose that, but I don’t think that we know that there’s a difference or why or if there’s a difference. Thank you.

Manju George 46:54
Okay, again, I’m going back to the CMS1 and CMS4 subtypes. So in our group, we have patients, we have one patient who has been almost NED, she’s been on the Beacon triplet, and she’s that one patient,who has gotten a phenomenal response. For most of the patients, we see that they’re on the triplet for a certain time, and then you know, things start growing, and then they get back on FOLFIRI + bev and that seems to work really well. So we have a group of patients for whom the FOLFIRI plus bev or FOLFOXIRI plus bev seems to give the best response. So again, I was kind of wondering whether, you know, that goes back to what you said about the BRAF, MEK, ERK pathway being important versus the cell cycle one, because then in that case, the cell cycle one would be more susceptible to chemo, right.?

Dr. Morris 48:01
Yeah, I mean, in theory, yes, but kind of given the fact that, these patients don’t respond in a treatment-refractory setting very well to chemotherapy, whether that translates into, clinical reality, I don’t think we know yet.

Manju George 48:22
Again, like, my push will be to if there could be an assay to tell you what kind of BRAF you are, from a patient perspective, that could make a big difference to patients as to how they approach the different treatments.

Dr. Morris 48:33
It would help us to Yeah, I mean, I think we’re very interested in understanding the different biologies, because again, we recognize it’s not a one-size-fits-all approach here.

Manju George 48:53
I think if there are no more questions, thank you very much for your time, and I guess that people, there are about 250 members many of them will watch the video because we’re going to post this in our group. And then there may be more questions, so then I’ll probably get them to you either by email or on Twitter. And thank you so much for your time.

Dr. Morris 49:20
Thank you, I appreciate it so much.

Manju George 49:23
Bye. Bye. Thanks, everyone.

DocTalk
2020
Dr. Morris
BRAF
Immunotherapy

Dr. Van Morris from MD Anderson discussed combining targeted therapies and immunotherapy for BRAF patients in this COLONTOWN Doc Talk, recorded in August 2020. 

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Overview of BRAF treatment options

Overview of BRAF treatment options

DocTalk
2020
Dr. Kopetz
BRAF

Dr Kopetz, from MD Anderson, provides an overview of BRAF treatment options for COLONTOWN’s Doc Talk series. Recorded in June, 2020.

Dr. Morris 00:00
Yeah, thank you guys for inviting me in, as you refer to, we really appreciate just the support of COLONTOWN in general. This goes beyond just kind of, as you mentioned, your support for the COBRA trial, and in the BRAF trials as well, which you guys are obviously incredible in mobilizing patients, through social media, but I will say more experientially as well, you know, this group means a lot to my patients. And it’s common for me to have that patient come to MD Anderson, who’s newly diagnosed with colon cancer and is very understandably afraid and, to hear kind of their testimonies with how helpful COLONTOWN has been, and helping them and other patient advocacy groups who have been in helping them to understand kind of what’s going on with the shock of this news in their lives. So we just want to say we as oncologists appreciate your commitment to helping patients in this effort we’re all fighting against. I will say, you know, I realized that Dr. Corcoran had presented I think, a week or so ago. So some of this may overlap, I’ll try to kind of interject my own opinions about this, but there will be some overlap. There may be some slides that we haven’t published yet. But I did want to share these just share our data. So when I hit the slides, I want to share that kind of why we think what we think, but also just maybe ask for those particular slides, just kind of keeping those confidential, because we haven’t really published this data yet. I’m gonna be talking about kind of combining targeted therapies with immunotherapy. And maybe not using a one-size-fits-all approach for the management of BRAF-mutated metastatic colorectal cancer.

So I always just feel that it’s important to start out with, a patient presentation just to kind of put into context what we’re up against here, and this was a patient that I met during my first year on faculty at MD Anderson. She was a 35-year-old lady from the valley in southern Texas who presented to the ER, with abdominal pain, no past medical history at all. She had a 13-year-old son, a single mother. When she presented with abdominal pain her surgeons locally felt that she had issues with their gallbladder and took her to surgery to remove the gallbladder and were surprised, instead, to find a large transverse colon mass with diffuse metastatic disease in the peritoneum that was responsible for the abdominal pain. The pathology ultimately showed a microsatellite-stable BRAF-mutated CRC tumor. She then came to MD Anderson, where, by the time she arrived at MD Anderson, she already had evolved a large bowel obstruction from her tumor. So this was in 2016, we started her on treatment with FOLFOXFIRI. And she had some initial clinical improvement, but unfortunately, within three months of what is really throwing the kitchen sink at this tumor, in terms of cytotoxic chemotherapy, she was already developing signs of clinical and radiographic progression. Within four months of her initial presentation, the single mother was transferred to hospice and it was horrific to watch this unfold as a new oncologist at that point in time, and I think it just really speaks to the challenge we face with BRAF-mutated colorectal cancer, we recognize that this is a unique population with regards to clinical outcomes. As I’ve alluded to, the responses to chemotherapy aren’t great as we’re used to seeing our BRAF wild-type patients, we recognize the unique pathology here just in terms of where these tumors commonly arise from and how they look under the microscope. And with the genome as well we’ll talk about later the high tumor burden may extend beyond the association with MSI high into the MSS setting as well. But also it’s unique with regard to the epigenome and we recognize these to be hypermethylated tumors. I think that this still represents an untapped biology, that is potentially targetable with regards to this particular subpopulation of colorectal cancer, and possibly, with respect to the transcriptome as well, and we’ll talk kind of about CMS correlations a little bit later, too. So we’re seeing a unique but challenging, but potentially intervenable, clinical presentation. And I’ll kind of go through these slides quickly, because we all recognize that the BRAF mutations, even though it’s typically called an uncommon subpopulation of CRC, when you still consider it’s 5 to 10% of all the patients who have CRC and colorectal cancer represents one of the top causes for cancer mortality in the United States. By absolute numbers, it’s still a large fraction of patients who are faced with the challenge of BRAF-mutated, metastatic CRC. And unfortunately, as we all know here the successes of targeted therapies in terms of response rates that other cancer types see with the same exact BRAF mutation, we just don’t see those in data that Dr. Kopetz and then Dr. Corcoran had shown with BRAF monotherapy and BRAF MEK combination therapy, it just we don’t see either the response rates or the survival outcomes, that we’re accustomed to seeing in the context of other solid tumors as well. So this, oftentimes, when I hear people say that we should be treating tumors agnostically to the primary and according to the molecular subtype, I always just cringe when I hear that, because I think that again, that’s a one-size-fits-all approach. And I think that the BRAF V600E story for colorectal cancer is a very good example of why we can’t practice under such an umbrella. This is just kind of data that, again, we’re all familiar with, from eight years ago now, just kind of showing why in the context of CRC, blocking the BRAF V600E oncoprotein with agents that work in other contexts doesn’t work as well, to kind of have this upregulation of MAP kinase signaling, you get kind of this constitutive activation of… I think I say this to say it again, I don’t… correct me if I’m wrong here, but I think I can probably go pretty quickly through the next couple of slides. I think this group fully understands the recent clinical trials, which have led to clinical outcomes, or new clinical options for these patients; but it was really exciting, I think, to be involved early on with Dr. Kopetz as a fellow even, and working on the SWOG protocol, and seeing this translate from an idea in the data that was coming out of the lab, to showing some benefit in patients.

We looked at a model too that is a different model that was initially had disease control with Vemurafenib and Cetuximab. And we saw similar results in PDX, as we were seeing acquisition of acquired KRAS mutations. This is something that in the Vemurafenib study, when they went to the baseline samples of these patients and looked in their plasma, droplet digital PCR sequencing showed the presence of very, very low allelic frequency of KRAS mutants, you can see 0.21%, 0.31% that were present at baseline that are oftentimes below the limit of detection of assays that were available at that time. When we looked at patients who were treated on a phase one trial at MD Anderson with Vemurafenib, Cetuximab and Irinotecan, we saw that in the black here, you see the relative allelic frequency of the BRAF V600e gene in ctDNA. But again, we were finding in patients the same thing that we had seen in the PDX models, that there were these acquired oncogenes showing up in the resistant setting that had not been present in the pretreatment specimens. So our question then, at that time, and this is the data that we took to Array when Kopetz was pitching the BEACON approach, was: can the addition of the MEK inhibitor overcome the resistance to BRAF, EGFR targeted therapies. I also think with the SHP and SOS inhibitors, which are coming out as well, this also kind of represents something we’re thinking about moving forward as well. And again, what we saw on our PDX was, again, when these tumors grew resistant to the Vemurafenib and Cetuximab, if we added a MEK inhibitor, we could see sensitivity; and I think that Corcoran and his group beat us to the punch in publishing this data, but we certainly felt that what we’re seeing in the lab were being validated by his group as well. And so again, it made a lot of sense to us. So, as we all know, these thoughts led to the creation of the BEACON study. This is kind of flipped here, but the overall response rate of 26% with the triplet, and the 20%, with the doublet, beat that of Irinotecan and Cetuximab. And as you guys are all aware, the addition of the MEK inhibitor didn’t add any overall survival difference between BRAF EGFR and, very excitingly, (oh, this should actually be changed)… Encorafenib, Cetuximab, in February or April 2020, became FDA approved. So this was obviously super exciting for us, and for our patients as well. So one of the questions that comes up with our patients when we talk about this in the clinic is binimetinib, is it a non-viable option for the management of patients with BRAF mutated colorectal cancer? And I honestly don’t fully know how to answer this question because I struggle with the idea that there’s a one-size-fits-all approach for patients with BRAF-mutated metastatic colorectal cancer. You know, I think that we realize, clinically, these are heterogeneous patients, and they’re probably biologically these are heterogeneous patients as well, and just kind of talking out loud, it just seems like when we manage these patients, we oftentimes get a lot of more mixed responses and the BRAF mutated context than we do in maybe the BRAF wild-type, I don’t know, if that’s a thing, I’m actually just kind of talking out loud right now, saying that I haven’t really looked into it, but it’s, you just see this more, I think, than kind of in the BRAF wild type where if patients are going to progress, all of their spots are going to be kind of progressing together. Whereas, oftentimes you’ll have responses in two-thirds of the lesions and then massive changes in the opposite direction in the other third. So, again, I think the underlying biologic heterogeneity, as well, is very interesting, and it points to the challenge of treating this disease. We presented this data at ASCO last year. It’s under review right now for a manuscript.

We looked at our cohort of patients at MD Anderson, if you had been evaluated since 2005. And we found 187 patients with BRAF-mutated metastatic CRC. If you were evaluated at our institution, and we just asked a simple question: if we take both ends of the spectrum and compare the differences what do we see? It wasn’t surprising that in the better survival group there were more MSI-high patients; almost 50% of the patients in whom we had data on had MSI-high tumors. But I think that one of the really interesting things as well, is that the median survival from the time of metastatic disease, and this longest survival, was eighty-four months, and in the lowest survival, it was 8.6. And I think that when we, as oncologists see the BRAF mutation, our minds automatically go to this lower end of the spectrum. But I think that we have to kind of keep open minds that there are patients who do have good survival outcomes. When we looked at what is driving out survival in this longest survival group, – what’s driving the long survival outcome? And we saw that was also heterogeneous as well. Some of these patients were able to go to surgery. And as you can see, in the black line here, many of these patients remained disease-free despite having an initial diagnosis of BRAF mutated, metastatic CRC, you know, 5, 6, 7 years out. But interestingly, and as we would expect, as immunotherapy has unfolded, patients who are MSI-high, were also seeing good long-term outcomes. Interestingly, one of these patients had an MSS tumor. But again, there were seven patients that we found who were doing fairly well for long periods of time on MAP-kinase targeted therapies, this included BRAF EGFR options, BRAF MEK options and BRAF inhibitors alone. So, there is some suggestion here to us that there may be a subpopulation of the BRAF mutated who just need targeting in their MAP-kinase, in their particular tumor is addicted to MAP-kinase signaling in the same way that perhaps an EGFR-mutated lung cancer may be addicted to that EGFR mutation, and being equally sensitive to tyrosine kinase inhibition in that context as well. So, I say that to say that even the drivers for favorable outcomes in the study are heterogeneous and do not always conform to what providers can assume. So, I talked about how this is still ongoing, I think, bench to bedside to bench and back to bedside success story, but how can we lift that tale further.

Obviously, in the MSI setting, response rates, even with a concomitant BRAF V600E mutation, is very good for anti-PD1 with or without anti-CTLA4 therapy. But unfortunately, still within the BRAF V600E context, we feel that the MSI-highs, that concomitant microsatellite instability is still a minority of the patients with BRAF V600E tumors. So, this is where we start getting a little bit more in-depth to our data, which we haven’t published yet, but I did want to share with you. It’s a majority of… we think of BRAF V600E tumors as being kind of high tumor mutation burden. And oftentimes I think the assumption is that, well, there’s this association between microsatellite instability, we all know that MSI tumors have higher mutation burdens and so that’s the reason that BRAF V600E tumors carry this association with having high tumor mutational burdens. We actually looked at four datasets that were available to us: the nursing health data from Memorial Sloan Kettering, data from the TCGA, and then from internal data, we had it at MD Anderson, and we said, let’s pull out the MSI high tumors. And let’s look at just the MSS tumors. And look at the patients and compare BRAF-mutated tumors with the BRAF wild types. We saw the same trends across all four datasets that in general MSS, BRAFV600E mutated tumors harbor higher tumor mutation burdens relative to their MSS, BRAF wild-type counterparts. So this may not be something that’s just MSI-high-driven. And if that’s the case, this may argue for some role of immunotherapy as a component for the MSS BRAF V600E story. We’re also excited to see data that was published in Science last year from Dr. Bardelli’s group in Milan, where they looked at BRAFV600E CRC cell lines and showed that when you treat these with dual BRAF EGFR targeting, you induce, in terms of expression, a loss of expression of the mismatch repair of proteins and can kind of create this transient and MSI-high like state. So, if that’s the case, you know, does that make sense that dual, or I guess, triplet, BRAF EGFR plus PD-1 therapy would make sense in this context. And this is something that we’ve seen as well. This is data we haven’t published yet, but this is from an expansion cohort of patients who were treated with vemurafenib, Irinotecan and cetuximab, – patients with BRAFV600E metastatic CRC. This is an example of a patient with a microsatellite stable tumor, but you can see prior to treatment, you don’t see a lot of immune reactive T cells within the tumor microenvironment, but that upon treatment with a BRAF EGFR inhibitor, you do see recruitment of activated CD8 positive cytotoxic T cells within the microenvironment. So that suggested to us that there may be a role for BRAF EGFR plus immune checkpoint therapy when we were pitching these concepts years ago in our initial letters of intent.

Let’s talk about CMS, you know, we all I think all recognize the role of CMS biology and that again, CMS1 is kind of the immune active group of a subset of CRC tumors, again, often associated with microsatellite instability. We also recognize that BRAFV600E tumors kind of aggregate to CMS1 oftentimes as well. And so our question again was is this association uniquely inherent to this association between MSI high CRC with BRAF V 600E mutations or can you see this in the MSS setting as well. So, we looked at data from the SWOG 1406. And again, it hasn’t been published yet either, but will be kind of forthcoming. And we looked specifically at in the red here from the from the SWOG study. And within the MSS context, the relative distribution of BRAFV600E tumors and as again, as you can see almost half of the MSS BRAF tumors were CMS1, the other kind of large proportion was CMS4. And this is different than what we had seen with an internal cohort of patients at MD Anderson who had MSS BRAF wild types, where you see a very low fraction of CMS1 within the BRAF of wild-type MSS contexts. So again what we’re seeing here is that within this MSS CRC population of patients, there may be some enrichment for a group, at least of BRAFV600E MSS tumors, for this more kind of immunologically hot CMS1 phenotype. We recognize from data that was published by several groups several years ago that already signatures can indeed for their subcategorized, BRAFV600E tumors, BM1, the B RAF mutation, one subgroup, it tends to be more of a kind of KRAS MAP kinase. Whereas the BM2 is more consistent with cell cycle gene regulation. And again, you can see here kind of when they look by CMS subtypes as well you see kind of what we had seen in the in the prior slide in the group where you have more MSS, BRAF mutated tumors, you start seeing more CM4 as well. And I think that it’s a little bit early to know how this will kind of play out but again, kind of argues for the heterogeneous subpopulations within the BRAF V600E contexts.

So I think that, this was the reason that we were thinking, about the BRAF, EGFR PD1 combination, and we’re very excited to kind of see Dr. Corcoran’s data that he presented earlier this summer in virtual Barcelona and then I think to you guys, it sounds like in the recent past here, looking at the Dabrafenib Trametinib Spartalizumab combination. So not exactly the same ideas or it’s just kind of given the mechanism of the BRAF but, I think that one of the things that really stuck out to us was the fact that you don’t see a whole lot of kind of toxicity with this combination. When we approached Array and BMS with this idea several years ago, I think that they internally were worried a lot about the skin toxicity that you were going to see with these combinations. And I think that his early data suggests that, this is a fairly well-tolerated regimen. But very interestingly even though the data are still very early and immature, the gross numbers, just comparing the same BRAF MEK combination with or without a PD1 I mean, it’s really encouraging, like, and it’s very encouraging. And similarly, I think that he saw, kind of with this slide, similar to what I had shown you guys with our multiplex immunofluorescence slide, or data several slides back, but again, that BRAF MEK PD1 does seem to recruit active T cells to the tumor microenvironment for hopeful cytotoxicity. So, this kind of led us to our concept at MD Anderson, which is now enrolling, you know, it’s a trial looking specifically at MSS BRAFV600E mutated CRC for patients who have not had prior BRAF, EGFR, MEK therapies or immunotherapy, I think his trial may have been a little more broader, and its eligibility criteria. But, this was the population we wanted to look at first, to kind of see signal and we put 11 patients on kind of amidst the COVID pandemic and having to stop it for 2 30-day windows to evaluate toxicity. And given the fact that this combination hadn’t been looked at before. And so we’ve enrolled, you know, fairly quickly under this trial, and what we’re seeing is that just kind of as Dr. Corcoran has shown, the safety data is very promising for this combination as well. This is the kind of the selected eligibility criteria for study again, MSS BRAF V600E adenocarcinoma of the colon or rectum, at least one but no more than two prior lines of systemic therapy, and then excluding prior BRAF, MEK or other anti EGFR therapies or immunotherapy. So that trial, like I said, is enrolling kind of at the same time, as we were about to launch, Dr. Atreya at UCSF was interested in looking at a BRAF MEK PD1 combination in the same setting. So we’ve worked with her to kind of get these trials going up in parallel, I believe her trial is open now. And I think that they’re kind of talking to her they’ve been enrolling too. Sorry, I actually don’t know what the safety data is of this combination yet. I haven’t heard that from her. But we presume that it’s going to be well tolerated.

So I want to circle back just to how we can learn from what we’re doing in the lab, and move that forward in this context, as well. We love using PDX models at MD Anderson kind of as I’ve talked about earlier, we feel that these kind of help us to pitch concepts for clinical trials to the NCI and pharmaceutical companies. And we’ve shown again, in data that hasn’t been published yet that what happens clinically, the patients on BRAF, EGFR therapies match what happens in their matched mouse avatar. So we looked at five patients who were treated on the SWOG 1406 study and characterized them by their clinical responses either having stable disease or partial response. And what you can see is that the overall trends for the stable disease patients in the blue mirror that for what was happening in the matched mouse whereas what was happening in the patients who responded clinically to the combination, you see have greater reductions, kind of in the tumor size in their mouse avatars as well. One of the interesting things just kind of anecdotally, just to kind of point out here as well, is that, in some of these mouse models, this was just looking at this one, the patient had a response to vemurafenib, irinotecan and cetuximab. You can see that in this mouse model for this patient, the BRAF EGFR, you know, it developed resistance but then when we added the irinotecan you see a drastic reduction in tumor size, there’s also a trend towards the irinotecan being different than that of the BRAF EGFR. Similarly, here, this mouse model, this patient responded to the combination, the mouse didn’t really benefit from irinotecan alone. But when we added all three, we saw that there was improvement. So, again, it may point, that just the one size doesn’t fit all. And also kind of points to the fact that this heterogeneity that I’m talking about. There is a trial, you know, that’s being developed in moving forward looking at chemo with or without encorafenib cetuximab in the frontline setting. And I think that data like this kind of points, the idea that, hey, maybe there’s some meaningful interaction with chemotherapy and targeted therapies in this context that that we will see. The problem is when it comes to mouse models, these are immunocompromised. So the the ability to study, the encorafenib nivolumab cetuximab combination would be limited in traditional PDX models. So, Dr. Karla in our group at MD Anderson’s, all star, his work to develop these humanized PDX models where tumor tissue from a patient and matched blood is used to create these mouse avatars. And we have funding that’s through an early career SPORE award at MD Anderson to do a clinical trial for our study, to look to see if what happens again in the patient mirrors what happens in with the same treatment combination in a developed humanized PDX model. And likewise, if what you see happening immunologically, in terms of changes, matches what happens in the matched humanized PDX model as well. This was funny, I got through the SPORE award the mentor here is John Allison, who won the Nobel Prize for his work in developing immunotherapy for patients with cancer. And it’s been really exciting to have the chance to work with Dr. Allison on and get his input on the design and science of what’s going on here. This was just kind of work showing some stuff we’re doing with Dr. Tusayan in collaboration with her on this trial, I would also ask this to be confidential and not shared as well, out of respect to her developing technology, but what we’re doing is we’re getting her slices of tumor, from pretreatment biopsies taken from patients on this study. And then she’s slicing these tumors and putting them into individual plates. And we’re testing what’s happening, with various combinations. And this is a patient who responded on our study to the triple combination. And what we saw was that when she treated the small slices of the tumor with encorafenib, and cetuximab by day 18, there was some reduction of tumor cell viability with the BRAF EGFR combination. When we added nivolumab, to that combination, we saw a much deeper reduction in cell viability, I didn’t put the nivolumab here as well, but it was that bar was here. So you didn’t see it wasn’t single-agent nivolumab down here either. So it was interesting to us because we felt that her model could likewise when you have the patient’s own immune cells present within the microenvironment may reflect what’s happening in the matched patient, but also that there may be in some patients some meaningful benefits to the addition of nivolumab. So, I hope that I provided here some rationale for why adding immunotherapy to BRAF, EGFR targeted therapies in MSS BRAF mutated setting makes sense, when these patients historically have been unresponsive to immunotherapy alone. I think we’re all encouraged by Dr. Corcoran’s work. And our hope would be that given the recent FDA indication of encorafenib and cetuximab we can build upon that success with a similar approach, and are certainly working to that and then I think that this will be informed further by preclinical and translational work that remains ongoing.

I was asked just to talk a little bit about atypical BRAF mutations in CRC. These are slides that I borrowed, full disclosure from Dr. Benny Johnson in our group at MD Anderson who really has led our group’s efforts, very valiantly to kind of work. This is a slide I think, had come from maybe Dr. Yeager at Memorial, I’m just kind of showing how the different mechanisms have the traditional RAS independence, BRAF V600E monomer, we associate with a class I, the dimerized. BRAF mutants, we see kind of with class II, and then kind of the, the BRAF inert, class IIIs that kind of has been characterized is these more atypical BRAF mutations. Again, we recognize that, as you can see, in all three of these, the atypical BRAFs tend to fare better than the BRAF V600Es and I would say I don’t think that this is something that all oncologists realize it’s not uncommon, so you get a referral or a call from outside doctors saying, hey, I have a patient with the BRAF mutation can I send them for your trial, and then we find out that it’s like a D594G mutation, kind of one of these more atypicals. So I think this is something we’re really trying to get the word out with oncologists as well, kind of as we learn more. And this is kind of, again, Dr. Johnson here, who I really just want to plug I think, has really had a passion for leading this effort in our group at MD Anderson, but just kind of some of the novel approaches that we’re trying to take at MD Anderson for kind of how we triage patients to various trials, according to their specific BRAF mutation, whether it’s a V600E, or a non V600E. So that kind of sums up what I had to say. I try to be active on Twitter, if you have any questions, please just let me know.

Manju George 37:06
So if I can, I’m going to start the questions, you can hear me, right?

Dr. Morris 37:12
Yes, I can. Yeah.

Manju George 37:13
So you were talking about the heterogeneity, so I was kind of wondering, in the unpublished data that you have, can you said that one part was the MAP kinase signaling pathway, and the other one was a different, you know, cell cycle and all of those pathways? So are you in your different trials are you attempting to find out what those different groups are? And in the reason I asked is, just like you said, we in our group, we find a lot of heterogeneity in how people respond to the different treatments for the BRAF V600E mutation. So it will make sense to us to if we could know what they were, because most of the patients, they already have their genomic testing done. And then if there’s some way to know upfront that you are in the 8.4 months category, not in the 84-month category, then you can plan accordingly how you have to prioritize treatment, right?

Dr. Morris 38:14
Yeah. So I think we’re looking at that we’re certainly collecting biopsies, to look at the transcriptome in RNA sequencing of these patients, and that may kind of inform on what their CMS classifications or BM1 BM2 classifications. I believe that Pfizer is looking at that on the patients who were on the Beacon study as well. So I think it’ll be very interesting if you see here that the BM1 patients are the ones who maybe had more benefit with the triplet, if there was a preferential added benefit with the addition of the MEK inhibitors that the BM1s than the BM twos. So, I’m very interested in this question as well and I hope that we’ll get some information from Pfizer about that. I think that Corcoran had published from his triplet, the dabrafenib, tremetinib, panitumumab work earlier this summer in clinical cancer research some signal kind of saying that, but I think it’ll be very interesting, in a larger cohort in a randomized trial to look at that in a kind of post hoc analysis.

Manju George 39:33
And then my other question would be like, there is this test called immuno score, right? Do you think those kinds of tests can tell you more, I was kind of wondering that if there was any efforts to develop some kind of assays so that you can look at a BRAF patient and say that this would be more BM1 or BM2, even the consensus molecular subtypes if there is, do you know if there is something like that being developed or going on?

Dr. Morris 40:02
I mean, not that I’m aware of I’m sure that it probably is being worked on. And it’s a really good point. But it’s not something that we’re actively working on now.

Manju George 40:13
Okay. And then the other person that you’re collaborating with Houston Yun, like the tissue culture thing. So it’s like an entire section of the biopsies is grown in the wells and you’re seeing that, when you try the combination treatment with the immunotherapy, just with that not inside an animal, you’re still seeing a response. Right? That’s what you said?

Dr. Morris 40:40
Yeah, that’s right. So, I mean, again, like, we’ve put only 11 patients on our trial thus far. And I mean, in full disclosure, with the pandemic, we had to shut down understandably, all optional biopsies for several months. So this limited our ability, thus far to look at this in high numbers, but it is something that we’re opening back up now. And we’ll be looking more stringently to see is there a signal? You always see kind of in the presentations, the N of one? So it’s hard to know for sure iff that’s truly representative, or if people cherry-pick the best for you to show? I don’t know,

Manju George 41:26
Okay. And then you have some results by GI-ASCO. Is that right?

Dr. Morris 41:36
Yeah, I mean, if so, it’d be a late-breaking abstract. I think we have 26 patients that we would plan on putting on study, so we’re just about halfway there. So it would either be a late-breaking, or probably the ASCO next year, we’ll see. We’re moving forward. And we talked to the NCI about what the next step would look like in a more definitive fashion.

Manju George 42:03
So, thank you, let’s see if others have questions. Questions, anyone?

COLONTOWN Member 42:29
Know, I feel like I need to, like, listen to this all again and consume so much information here, it’s been very helpful. But I was really interested to hear about some of the other mutations, you know, that we’re seeing, that are driving when BRAF you know, kind of becomes, you know, less important. So, while you know, I’m, again, I kind of feel like I need to, like review all of that, again, because I don’t think I caught it all. But you know, any other thoughts you have around that? And how we should think about how does treatment progress, as you know, maybe get to the end of what targeted BRAF therapy can do how do you make the decision to move forward from there?

Dr. Morris 43:10
Yeah, I mean, I think it’s a really good question. I think one of the things that hasn’t been fully looked at yet is with what you see in a RAS wild-type setting where there’s this idea of, these patients developing these acquired RAS, KRAS NRAS mutations. And then when you pull away the anti-EGFR therapy, that selective pressure is lost, and that acquired mechanism of resistance decays back down. Dr. Christine, Parsighian in our group had a really nice paper just kind of showing the kinetics of in the acquire resistance study to anti-EGFR therapy, the median half-life is about four to five months. So, before by the time you see 50% of that acquired resistance mechanism go away and then you can re-challenge these patients and see some benefit, and that’s being looked at in multiple clinical trials right now. And then the question is when a patient progresses on BRAF EGFR therapy, is that the end ever in their story and journey for EGFR therapy, or is there a role for rechallenge? None of us knows that. And I think it would be really, really interesting to look at. So I mean, yeah, like I think that’s something we’ve thought about, and I’m not aware of any data out there that’s shown that that’s successful or not successful.

COLONTOWN Member 44:53
Thank you, Manju. Dr. Morris, My name is Rashmi and I’m a caregiver to my husband with BRAF. My question to you is we know the pathway of the BRAF and the EGFR and the MEK and Erk. Looking at the three trials between Dr. Corcoran’s Dr. Kopetz and Dr. Atreya’s it seems that the BRAF and immunotherapy are similar. What’s different is the EGFR versus the MEK. Would you speak something to that? Is there I mean, your study is leaning towards the EGFR versus Dr. Corcoran’s is looking more at the MEK inhibitor?

Dr. Morris 45:39
Yeah, I mean, I think that’s what he’s seeing and the rationale for what we did what we did was similar, I don’t think that we know that BRAF, EGFR PD1 is any better or worse than BRAF MEK PD1, I think for us we realized several years ago that with the SWOG data that probably BRAF EGFR was going to get approved. And how we were going to be able to develop a strategy to, if successful to roll this out to our patients. It made sense in the context of a BRAF EGFR setting. So that’s why we we kind of went with that for approach years ago. He ‘s done a lot of work in the BRAF, MEK. I mean, I can’t speak to why they chose that, but I don’t think that we know that there’s a difference or why or if there’s a difference. Thank you.

Manju George 46:54
Okay, again, I’m going back to the CMS1 and CMS4 subtypes. So in our group, we have patients, we have one patient who has been almost NED, she’s been on the Beacon triplet, and she’s that one patient,who has gotten a phenomenal response. For most of the patients, we see that they’re on the triplet for a certain time, and then you know, things start growing, and then they get back on FOLFIRI + bev and that seems to work really well. So we have a group of patients for whom the FOLFIRI plus bev or FOLFOXIRI plus bev seems to give the best response. So again, I was kind of wondering whether, you know, that goes back to what you said about the BRAF, MEK, ERK pathway being important versus the cell cycle one, because then in that case, the cell cycle one would be more susceptible to chemo, right.?

Dr. Morris 48:01
Yeah, I mean, in theory, yes, but kind of given the fact that, these patients don’t respond in a treatment-refractory setting very well to chemotherapy, whether that translates into, clinical reality, I don’t think we know yet.

Manju George 48:22
Again, like, my push will be to if there could be an assay to tell you what kind of BRAF you are, from a patient perspective, that could make a big difference to patients as to how they approach the different treatments.

Dr. Morris 48:33
It would help us to Yeah, I mean, I think we’re very interested in understanding the different biologies, because again, we recognize it’s not a one-size-fits-all approach here.

Manju George 48:53
I think if there are no more questions, thank you very much for your time, and I guess that people, there are about 250 members many of them will watch the video because we’re going to post this in our group. And then there may be more questions, so then I’ll probably get them to you either by email or on Twitter. And thank you so much for your time.

Dr. Morris 49:20
Thank you, I appreciate it so much.

Manju George 49:23
Bye. Bye. Thanks, everyone.

DocTalk
2020
Dr. Kopetz
BRAF

Dr Kopetz, from MD Anderson, provides an overview of BRAF treatment options for COLONTOWN’s Doc Talk series. Recorded in June, 2020.

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